Wall clock time and date at job start Wed Apr 1 2020 04:30:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30010 * 127.33703 * 2 1
4 4 O 1.20657 * 112.30328 * 180.02562 * 3 2 1
5 5 C 1.33491 * 113.15656 * 359.97438 * 4 3 2
6 6 C 1.50694 * 126.83151 * 180.02562 * 5 4 3
7 7 C 1.53004 * 117.49930 * 8.59851 * 6 5 4
8 8 C 1.53003 * 117.50095 * 299.97485 * 6 5 4
9 9 C 1.37365 * 106.34389 * 0.02562 * 5 4 3
10 10 C 1.47393 * 128.56843 * 179.73701 * 9 5 4
11 11 O 1.21604 * 120.00083 * 90.00014 * 10 9 5
12 12 N 1.34779 * 119.99989 * 270.00533 * 10 9 5
13 13 C 1.46923 * 120.63108 * 359.97438 * 12 10 9
14 14 C 1.53191 * 108.77745 * 126.37130 * 13 12 10
15 15 C 1.53043 * 109.31117 * 54.63496 * 14 13 12
16 16 C 1.53040 * 109.53564 * 298.63782 * 15 14 13
17 17 H 1.08996 * 109.50006 * 301.40826 * 16 15 14
18 18 C 1.53000 * 109.49654 * 181.31558 * 16 15 14
19 19 H 1.09006 * 109.47334 * 60.00143 * 18 16 15
20 20 C 1.53001 * 109.47278 * 300.00420 * 18 16 15
21 21 N 1.46498 * 109.47714 * 179.97438 * 18 16 15
22 22 C 1.36933 * 120.00357 * 205.00046 * 21 18 16
23 23 H 1.07996 * 120.00232 * 359.97438 * 22 21 18
24 24 C 1.38819 * 120.00005 * 179.97438 * 22 21 18
25 25 N 1.31623 * 119.99869 * 359.97438 * 24 22 21
26 26 Si 1.86792 * 120.00006 * 180.02562 * 24 22 21
27 27 H 1.48497 * 109.47510 * 89.99754 * 26 24 22
28 28 H 1.48498 * 109.47232 * 209.99895 * 26 24 22
29 29 H 1.48500 * 109.47121 * 329.99395 * 26 24 22
30 30 C 1.46927 * 120.62973 * 179.72057 * 12 10 9
31 31 H 1.08999 * 109.46835 * 269.97871 * 1 2 3
32 32 H 1.09002 * 109.47070 * 29.97411 * 1 2 3
33 33 H 1.09001 * 109.47058 * 149.97701 * 1 2 3
34 34 H 1.09004 * 115.55533 * 154.30162 * 6 5 4
35 35 H 1.09002 * 117.49850 * 359.97438 * 7 6 5
36 36 H 1.09005 * 117.50058 * 145.02084 * 7 6 5
37 37 H 1.09000 * 117.50096 * 214.97540 * 8 6 5
38 38 H 1.09002 * 117.49451 * 359.97438 * 8 6 5
39 39 H 1.09005 * 109.59214 * 246.16033 * 13 12 10
40 40 H 1.09004 * 109.58768 * 6.44220 * 13 12 10
41 41 H 1.08998 * 109.50456 * 174.58668 * 14 13 12
42 42 H 1.09001 * 109.49758 * 294.65948 * 14 13 12
43 43 H 1.08993 * 109.45996 * 58.65580 * 15 14 13
44 44 H 1.08998 * 109.45910 * 178.61563 * 15 14 13
45 45 H 1.09004 * 109.47483 * 180.02562 * 20 18 16
46 46 H 1.09003 * 109.47061 * 299.99430 * 20 18 16
47 47 H 1.09000 * 109.47400 * 59.99526 * 20 18 16
48 48 H 0.97006 * 119.99420 * 25.00057 * 21 18 16
49 49 H 0.96997 * 120.00065 * 179.97438 * 25 24 22
50 50 H 1.08997 * 109.58890 * 353.41504 * 30 12 10
51 51 H 1.09004 * 109.58571 * 113.83970 * 30 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2956 1.0337 0.0000
4 8 3.4608 0.7207 -0.0005
5 6 3.6494 -0.6008 -0.0004
6 6 4.9711 -1.3247 -0.0003
7 6 6.2354 -0.4871 0.2024
8 6 5.9165 -1.0695 -1.1760
9 6 2.3991 -1.1697 -0.0003
10 6 2.0400 -2.5992 -0.0054
11 8 1.8939 -3.1932 1.0456
12 7 1.8737 -3.2481 -1.1750
13 6 2.0463 -2.5439 -2.4529
14 6 3.0538 -3.3169 -3.3097
15 6 2.5903 -4.7688 -3.4497
16 6 2.5301 -5.4223 -2.0671
17 1 3.5140 -5.3777 -1.6004
18 6 2.0982 -6.8830 -2.2112
19 1 2.8181 -7.4151 -2.8332
20 6 0.7161 -6.9442 -2.8647
21 7 2.0413 -7.5083 -0.8876
22 6 2.1876 -8.8642 -0.7640
23 1 2.3445 -9.4727 -1.6423
24 6 2.1341 -9.4566 0.4903
25 7 1.9433 -8.7149 1.5608
26 14 2.3344 -11.3061 0.6590
27 1 3.7714 -11.6341 0.8393
28 1 1.5665 -11.7817 1.8377
29 1 1.8243 -11.9730 -0.5659
30 6 1.5217 -4.6744 -1.1963
31 1 -0.3633 -0.0004 1.0277
32 1 -0.3633 0.8902 -0.5134
33 1 -0.3633 -0.8898 -0.5142
34 1 4.9579 -2.3277 0.4262
35 1 6.1111 0.5877 0.3354
36 1 7.0541 -0.9389 0.7626
37 1 6.5254 -1.9044 -1.5227
38 1 5.5821 -0.3783 -1.9497
39 1 1.0898 -2.4902 -2.9728
40 1 2.4184 -1.5362 -2.2675
41 1 3.1190 -2.8591 -4.2967
42 1 4.0330 -3.2918 -2.8315
43 1 1.6006 -4.7916 -3.9055
44 1 3.2926 -5.3150 -4.0793
45 1 0.4083 -7.9849 -2.9669
46 1 -0.0038 -6.4123 -2.2426
47 1 0.7589 -6.4791 -3.8495
48 1 1.8999 -6.9618 -0.0987
49 1 1.9055 -9.1289 2.4372
50 1 1.5501 -5.0730 -0.1822
51 1 0.5215 -4.7977 -1.6117
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568408538.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:23
Heat of formation + Delta-G solvation = 59.069377 kcal
Electronic energy + Delta-G solvation = -32147.242221 eV
Core-core repulsion = 28050.956881 eV
Total energy + Delta-G solvation = -4096.285340 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-45.05768 -40.15115 -37.93378 -37.63843 -35.46749 -34.71423 -32.97674 -31.89540
-31.85616 -29.81126 -28.99332 -27.93054 -26.11884 -24.68258 -23.96046 -23.53953
-23.18193 -22.74009 -21.24918 -20.18568 -19.41335 -18.60333 -17.98861 -17.71803
-17.13646 -16.66603 -16.17416 -15.85696 -14.95942 -14.79468 -14.73769 -14.44012
-13.96198 -13.75874 -13.75215 -13.57965 -13.52080 -13.27314 -13.01100 -12.91444
-12.74350 -12.44490 -12.28564 -11.96094 -11.92249 -11.65094 -11.56180 -11.41278
-11.17069 -11.00065 -10.84708 -10.78107 -10.64250 -10.47070 -10.28616 -10.23320
-10.15590 -9.96459 -9.79532 -9.52846 -9.28925 -8.88229 -8.50333 -6.92557
-5.70990 -3.00851 1.07342 1.73034 2.44152 2.57759 3.06949 3.45768
3.46959 3.50636 3.52839 3.84824 3.94961 4.37559 4.42642 4.54111
4.59909 4.62949 4.74304 4.88387 4.99228 5.04060 5.19082 5.20999
5.25333 5.27751 5.32753 5.33593 5.39140 5.45547 5.55102 5.60398
5.63485 5.68711 5.73457 5.75373 5.81417 5.83124 5.85844 5.94218
6.06462 6.10975 6.24450 6.34635 6.38639 6.56131 6.62702 6.74894
6.88535 7.12427 7.41166 7.73714 8.02957 8.17720 8.46556 9.57496
10.15292 10.49170 11.51045
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012875 B = 0.002981 C = 0.002925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2174.212183 B = 9389.896729 C = 9571.497588
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.054 3.946
3 N -0.356 5.356
4 O 0.094 5.906
5 C 0.047 3.953
6 C -0.094 4.094
7 C -0.161 4.161
8 C -0.155 4.155
9 C -0.232 4.232
10 C 0.593 3.407
11 O -0.514 6.514
12 N -0.597 5.597
13 C 0.110 3.890
14 C -0.132 4.132
15 C -0.114 4.114
16 C -0.103 4.103
17 H 0.073 0.927
18 C 0.181 3.819
19 H 0.049 0.951
20 C -0.170 4.170
21 N -0.726 5.726
22 C -0.241 4.241
23 H 0.069 0.931
24 C -0.012 4.012
25 N -0.929 5.929
26 Si 0.904 3.096
27 H -0.291 1.291
28 H -0.292 1.292
29 H -0.283 1.283
30 C 0.116 3.884
31 H 0.087 0.913
32 H 0.082 0.918
33 H 0.083 0.917
34 H 0.141 0.859
35 H 0.105 0.895
36 H 0.109 0.891
37 H 0.110 0.890
38 H 0.101 0.899
39 H 0.068 0.932
40 H 0.075 0.925
41 H 0.072 0.928
42 H 0.067 0.933
43 H 0.068 0.932
44 H 0.066 0.934
45 H 0.052 0.948
46 H 0.048 0.952
47 H 0.039 0.961
48 H 0.385 0.615
49 H 0.255 0.745
50 H 0.103 0.897
51 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.682 20.560 -10.604 23.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.108 4.108
3 N -0.063 5.063
4 O 0.033 5.967
5 C -0.016 4.016
6 C -0.113 4.113
7 C -0.198 4.198
8 C -0.192 4.192
9 C -0.239 4.239
10 C 0.378 3.622
11 O -0.388 6.388
12 N -0.330 5.330
13 C -0.013 4.013
14 C -0.171 4.171
15 C -0.152 4.152
16 C -0.123 4.123
17 H 0.092 0.908
18 C 0.070 3.930
19 H 0.067 0.933
20 C -0.230 4.230
21 N -0.368 5.368
22 C -0.372 4.372
23 H 0.087 0.913
24 C -0.208 4.208
25 N -0.577 5.577
26 Si 0.735 3.265
27 H -0.218 1.218
28 H -0.218 1.218
29 H -0.208 1.208
30 C -0.005 4.005
31 H 0.105 0.895
32 H 0.100 0.900
33 H 0.102 0.898
34 H 0.159 0.841
35 H 0.123 0.877
36 H 0.127 0.873
37 H 0.129 0.871
38 H 0.119 0.881
39 H 0.087 0.913
40 H 0.093 0.907
41 H 0.090 0.910
42 H 0.086 0.914
43 H 0.086 0.914
44 H 0.085 0.915
45 H 0.071 0.929
46 H 0.067 0.933
47 H 0.058 0.942
48 H 0.220 0.780
49 H 0.065 0.935
50 H 0.121 0.879
51 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 3.424 21.357 -10.030 23.842
hybrid contribution -0.128 -1.665 0.458 1.731
sum 3.297 19.692 -9.571 22.142
Atomic orbital electron populations
1.20226 0.85098 1.04011 1.04116 1.24740 0.98579 0.86496 1.01031
1.73609 0.89044 1.23218 1.20454 1.84485 1.21520 1.22420 1.68270
1.23498 0.95558 0.83307 0.99273 1.20551 0.83967 0.99770 1.07017
1.23092 0.96946 1.00171 0.99609 1.23122 1.00699 1.03848 0.91567
1.21849 0.92423 0.95518 1.14119 1.16930 0.77426 0.83830 0.83968
1.90904 1.49731 1.67243 1.30971 1.48078 1.68549 1.11328 1.05026
1.21683 0.99633 0.95661 0.84309 1.21909 0.99103 0.96562 0.99494
1.21626 1.01822 0.94412 0.97377 1.21701 0.99586 0.96137 0.94840
0.90845 1.20167 0.94349 0.89464 0.89017 0.93280 1.22578 1.00251
1.01488 0.98636 1.42517 1.86852 1.05222 1.02187 1.19209 1.41669
0.83731 0.92569 0.91262 1.24744 1.02880 0.97641 0.95572 1.69673
1.56399 1.34009 0.97616 0.86238 0.77494 0.85681 0.77047 1.21810
1.21834 1.20837 1.21818 0.98031 0.77359 1.03327 0.89475 0.89950
0.89789 0.84114 0.87691 0.87284 0.87140 0.88056 0.91327 0.90700
0.90990 0.91421 0.91377 0.91541 0.92869 0.93330 0.94237 0.78044
0.93490 0.87915 0.90894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.74 10.49 36.01 0.38 -0.36 16
2 C 0.05 0.67 7.59 -79.76 -0.61 0.06 16
3 N -0.36 -4.56 12.01 34.78 0.42 -4.14 16
4 O 0.09 1.14 10.86 18.66 0.20 1.34 16
5 C 0.05 0.56 6.90 -34.63 -0.24 0.32 16
6 C -0.09 -0.93 6.15 -91.77 -0.56 -1.49 16
7 C -0.16 -1.18 10.18 -26.73 -0.27 -1.46 16
8 C -0.16 -1.11 10.23 -26.73 -0.27 -1.38 16
9 C -0.23 -3.14 4.22 -102.89 -0.43 -3.57 16
10 C 0.59 9.50 7.52 -12.53 -0.09 9.40 16
11 O -0.51 -10.65 16.52 5.27 0.09 -10.56 16
12 N -0.60 -8.32 2.98 -174.29 -0.52 -8.84 16
13 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16
14 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16
15 C -0.11 -1.31 4.78 -26.69 -0.13 -1.44 16
16 C -0.10 -1.59 2.32 -90.71 -0.21 -1.80 16
17 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
18 C 0.18 3.40 2.72 -67.93 -0.18 3.22 16
19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16
20 C -0.17 -2.88 8.79 37.16 0.33 -2.55 16
21 N -0.73 -17.89 5.04 -53.42 -0.27 -18.16 16
22 C -0.24 -6.64 9.93 -15.06 -0.15 -6.78 16
23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16
25 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16
26 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16
27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16
28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
30 C 0.12 1.88 5.21 -3.92 -0.02 1.86 16
31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16
32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.14 1.58 8.14 -51.93 -0.42 1.15 16
35 H 0.10 0.73 8.02 -51.93 -0.42 0.32 16
36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16
38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16
39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.07 0.74 6.26 -51.93 -0.32 0.41 16
41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16
44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
46 H 0.05 0.83 6.32 -51.93 -0.33 0.50 16
47 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16
48 H 0.38 10.27 6.17 -40.82 -0.25 10.01 16
49 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16
50 H 0.10 2.10 5.59 -51.93 -0.29 1.81 16
51 H 0.07 1.13 6.16 -51.93 -0.32 0.81 16
LS Contribution 407.82 15.07 6.15 6.15
Total: -1.00 -33.51 407.82 -9.05 -42.56
By element:
Atomic # 1 Polarization: 16.77 SS G_CDS: -8.07 Total: 8.71 kcal
Atomic # 6 Polarization: -3.98 SS G_CDS: -2.75 Total: -6.73 kcal
Atomic # 7 Polarization: -59.31 SS G_CDS: 0.35 Total: -58.96 kcal
Atomic # 8 Polarization: -9.51 SS G_CDS: 0.29 Total: -9.22 kcal
Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -33.51 -9.05 -42.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568408538.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.631 kcal
(2) G-P(sol) polarization free energy of solvation -33.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.121 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds