Wall clock time and date at job start Wed Apr 1 2020 04:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30010 * 127.33703 * 2 1 4 4 O 1.20657 * 112.30328 * 180.02562 * 3 2 1 5 5 C 1.33491 * 113.15656 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.83151 * 180.02562 * 5 4 3 7 7 C 1.53004 * 117.49930 * 8.59851 * 6 5 4 8 8 C 1.53003 * 117.50095 * 299.97485 * 6 5 4 9 9 C 1.37365 * 106.34389 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56843 * 179.73701 * 9 5 4 11 11 O 1.21604 * 120.00083 * 90.00014 * 10 9 5 12 12 N 1.34779 * 119.99989 * 270.00533 * 10 9 5 13 13 C 1.46923 * 120.63108 * 359.97438 * 12 10 9 14 14 C 1.53191 * 108.77745 * 126.37130 * 13 12 10 15 15 C 1.53043 * 109.31117 * 54.63496 * 14 13 12 16 16 C 1.53040 * 109.53564 * 298.63782 * 15 14 13 17 17 H 1.08996 * 109.50006 * 301.40826 * 16 15 14 18 18 C 1.53000 * 109.49654 * 181.31558 * 16 15 14 19 19 H 1.09006 * 109.47334 * 60.00143 * 18 16 15 20 20 C 1.53001 * 109.47278 * 300.00420 * 18 16 15 21 21 N 1.46498 * 109.47714 * 179.97438 * 18 16 15 22 22 C 1.36933 * 120.00357 * 205.00046 * 21 18 16 23 23 H 1.07996 * 120.00232 * 359.97438 * 22 21 18 24 24 C 1.38819 * 120.00005 * 179.97438 * 22 21 18 25 25 N 1.31623 * 119.99869 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00006 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47510 * 89.99754 * 26 24 22 28 28 H 1.48498 * 109.47232 * 209.99895 * 26 24 22 29 29 H 1.48500 * 109.47121 * 329.99395 * 26 24 22 30 30 C 1.46927 * 120.62973 * 179.72057 * 12 10 9 31 31 H 1.08999 * 109.46835 * 269.97871 * 1 2 3 32 32 H 1.09002 * 109.47070 * 29.97411 * 1 2 3 33 33 H 1.09001 * 109.47058 * 149.97701 * 1 2 3 34 34 H 1.09004 * 115.55533 * 154.30162 * 6 5 4 35 35 H 1.09002 * 117.49850 * 359.97438 * 7 6 5 36 36 H 1.09005 * 117.50058 * 145.02084 * 7 6 5 37 37 H 1.09000 * 117.50096 * 214.97540 * 8 6 5 38 38 H 1.09002 * 117.49451 * 359.97438 * 8 6 5 39 39 H 1.09005 * 109.59214 * 246.16033 * 13 12 10 40 40 H 1.09004 * 109.58768 * 6.44220 * 13 12 10 41 41 H 1.08998 * 109.50456 * 174.58668 * 14 13 12 42 42 H 1.09001 * 109.49758 * 294.65948 * 14 13 12 43 43 H 1.08993 * 109.45996 * 58.65580 * 15 14 13 44 44 H 1.08998 * 109.45910 * 178.61563 * 15 14 13 45 45 H 1.09004 * 109.47483 * 180.02562 * 20 18 16 46 46 H 1.09003 * 109.47061 * 299.99430 * 20 18 16 47 47 H 1.09000 * 109.47400 * 59.99526 * 20 18 16 48 48 H 0.97006 * 119.99420 * 25.00057 * 21 18 16 49 49 H 0.96997 * 120.00065 * 179.97438 * 25 24 22 50 50 H 1.08997 * 109.58890 * 353.41504 * 30 12 10 51 51 H 1.09004 * 109.58571 * 113.83970 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 -0.0004 6 6 4.9711 -1.3247 -0.0003 7 6 6.2354 -0.4871 0.2024 8 6 5.9165 -1.0695 -1.1760 9 6 2.3991 -1.1697 -0.0003 10 6 2.0400 -2.5992 -0.0054 11 8 1.8939 -3.1932 1.0456 12 7 1.8737 -3.2481 -1.1750 13 6 2.0463 -2.5439 -2.4529 14 6 3.0538 -3.3169 -3.3097 15 6 2.5903 -4.7688 -3.4497 16 6 2.5301 -5.4223 -2.0671 17 1 3.5140 -5.3777 -1.6004 18 6 2.0982 -6.8830 -2.2112 19 1 2.8181 -7.4151 -2.8332 20 6 0.7161 -6.9442 -2.8647 21 7 2.0413 -7.5083 -0.8876 22 6 2.1876 -8.8642 -0.7640 23 1 2.3445 -9.4727 -1.6423 24 6 2.1341 -9.4566 0.4903 25 7 1.9433 -8.7149 1.5608 26 14 2.3344 -11.3061 0.6590 27 1 3.7714 -11.6341 0.8393 28 1 1.5665 -11.7817 1.8377 29 1 1.8243 -11.9730 -0.5659 30 6 1.5217 -4.6744 -1.1963 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 4.9579 -2.3277 0.4262 35 1 6.1111 0.5877 0.3354 36 1 7.0541 -0.9389 0.7626 37 1 6.5254 -1.9044 -1.5227 38 1 5.5821 -0.3783 -1.9497 39 1 1.0898 -2.4902 -2.9728 40 1 2.4184 -1.5362 -2.2675 41 1 3.1190 -2.8591 -4.2967 42 1 4.0330 -3.2918 -2.8315 43 1 1.6006 -4.7916 -3.9055 44 1 3.2926 -5.3150 -4.0793 45 1 0.4083 -7.9849 -2.9669 46 1 -0.0038 -6.4123 -2.2426 47 1 0.7589 -6.4791 -3.8495 48 1 1.8999 -6.9618 -0.0987 49 1 1.9055 -9.1289 2.4372 50 1 1.5501 -5.0730 -0.1822 51 1 0.5215 -4.7977 -1.6117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568408538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:23 Heat of formation + Delta-G solvation = 59.069377 kcal Electronic energy + Delta-G solvation = -32147.242221 eV Core-core repulsion = 28050.956881 eV Total energy + Delta-G solvation = -4096.285340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.05768 -40.15115 -37.93378 -37.63843 -35.46749 -34.71423 -32.97674 -31.89540 -31.85616 -29.81126 -28.99332 -27.93054 -26.11884 -24.68258 -23.96046 -23.53953 -23.18193 -22.74009 -21.24918 -20.18568 -19.41335 -18.60333 -17.98861 -17.71803 -17.13646 -16.66603 -16.17416 -15.85696 -14.95942 -14.79468 -14.73769 -14.44012 -13.96198 -13.75874 -13.75215 -13.57965 -13.52080 -13.27314 -13.01100 -12.91444 -12.74350 -12.44490 -12.28564 -11.96094 -11.92249 -11.65094 -11.56180 -11.41278 -11.17069 -11.00065 -10.84708 -10.78107 -10.64250 -10.47070 -10.28616 -10.23320 -10.15590 -9.96459 -9.79532 -9.52846 -9.28925 -8.88229 -8.50333 -6.92557 -5.70990 -3.00851 1.07342 1.73034 2.44152 2.57759 3.06949 3.45768 3.46959 3.50636 3.52839 3.84824 3.94961 4.37559 4.42642 4.54111 4.59909 4.62949 4.74304 4.88387 4.99228 5.04060 5.19082 5.20999 5.25333 5.27751 5.32753 5.33593 5.39140 5.45547 5.55102 5.60398 5.63485 5.68711 5.73457 5.75373 5.81417 5.83124 5.85844 5.94218 6.06462 6.10975 6.24450 6.34635 6.38639 6.56131 6.62702 6.74894 6.88535 7.12427 7.41166 7.73714 8.02957 8.17720 8.46556 9.57496 10.15292 10.49170 11.51045 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.002981 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.212183 B = 9389.896729 C = 9571.497588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.356 5.356 4 O 0.094 5.906 5 C 0.047 3.953 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.232 4.232 10 C 0.593 3.407 11 O -0.514 6.514 12 N -0.597 5.597 13 C 0.110 3.890 14 C -0.132 4.132 15 C -0.114 4.114 16 C -0.103 4.103 17 H 0.073 0.927 18 C 0.181 3.819 19 H 0.049 0.951 20 C -0.170 4.170 21 N -0.726 5.726 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.116 3.884 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.039 0.961 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.103 0.897 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 20.560 -10.604 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.063 5.063 4 O 0.033 5.967 5 C -0.016 4.016 6 C -0.113 4.113 7 C -0.198 4.198 8 C -0.192 4.192 9 C -0.239 4.239 10 C 0.378 3.622 11 O -0.388 6.388 12 N -0.330 5.330 13 C -0.013 4.013 14 C -0.171 4.171 15 C -0.152 4.152 16 C -0.123 4.123 17 H 0.092 0.908 18 C 0.070 3.930 19 H 0.067 0.933 20 C -0.230 4.230 21 N -0.368 5.368 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.577 5.577 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.005 4.005 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.121 0.879 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.424 21.357 -10.030 23.842 hybrid contribution -0.128 -1.665 0.458 1.731 sum 3.297 19.692 -9.571 22.142 Atomic orbital electron populations 1.20226 0.85098 1.04011 1.04116 1.24740 0.98579 0.86496 1.01031 1.73609 0.89044 1.23218 1.20454 1.84485 1.21520 1.22420 1.68270 1.23498 0.95558 0.83307 0.99273 1.20551 0.83967 0.99770 1.07017 1.23092 0.96946 1.00171 0.99609 1.23122 1.00699 1.03848 0.91567 1.21849 0.92423 0.95518 1.14119 1.16930 0.77426 0.83830 0.83968 1.90904 1.49731 1.67243 1.30971 1.48078 1.68549 1.11328 1.05026 1.21683 0.99633 0.95661 0.84309 1.21909 0.99103 0.96562 0.99494 1.21626 1.01822 0.94412 0.97377 1.21701 0.99586 0.96137 0.94840 0.90845 1.20167 0.94349 0.89464 0.89017 0.93280 1.22578 1.00251 1.01488 0.98636 1.42517 1.86852 1.05222 1.02187 1.19209 1.41669 0.83731 0.92569 0.91262 1.24744 1.02880 0.97641 0.95572 1.69673 1.56399 1.34009 0.97616 0.86238 0.77494 0.85681 0.77047 1.21810 1.21834 1.20837 1.21818 0.98031 0.77359 1.03327 0.89475 0.89950 0.89789 0.84114 0.87691 0.87284 0.87140 0.88056 0.91327 0.90700 0.90990 0.91421 0.91377 0.91541 0.92869 0.93330 0.94237 0.78044 0.93490 0.87915 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.49 36.01 0.38 -0.36 16 2 C 0.05 0.67 7.59 -79.76 -0.61 0.06 16 3 N -0.36 -4.56 12.01 34.78 0.42 -4.14 16 4 O 0.09 1.14 10.86 18.66 0.20 1.34 16 5 C 0.05 0.56 6.90 -34.63 -0.24 0.32 16 6 C -0.09 -0.93 6.15 -91.77 -0.56 -1.49 16 7 C -0.16 -1.18 10.18 -26.73 -0.27 -1.46 16 8 C -0.16 -1.11 10.23 -26.73 -0.27 -1.38 16 9 C -0.23 -3.14 4.22 -102.89 -0.43 -3.57 16 10 C 0.59 9.50 7.52 -12.53 -0.09 9.40 16 11 O -0.51 -10.65 16.52 5.27 0.09 -10.56 16 12 N -0.60 -8.32 2.98 -174.29 -0.52 -8.84 16 13 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 14 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 15 C -0.11 -1.31 4.78 -26.69 -0.13 -1.44 16 16 C -0.10 -1.59 2.32 -90.71 -0.21 -1.80 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 18 C 0.18 3.40 2.72 -67.93 -0.18 3.22 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 C -0.17 -2.88 8.79 37.16 0.33 -2.55 16 21 N -0.73 -17.89 5.04 -53.42 -0.27 -18.16 16 22 C -0.24 -6.64 9.93 -15.06 -0.15 -6.78 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 26 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 C 0.12 1.88 5.21 -3.92 -0.02 1.86 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.14 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.10 0.73 8.02 -51.93 -0.42 0.32 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.74 6.26 -51.93 -0.32 0.41 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.83 6.32 -51.93 -0.33 0.50 16 47 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16 48 H 0.38 10.27 6.17 -40.82 -0.25 10.01 16 49 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 50 H 0.10 2.10 5.59 -51.93 -0.29 1.81 16 51 H 0.07 1.13 6.16 -51.93 -0.32 0.81 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -33.51 407.82 -9.05 -42.56 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.07 Total: 8.71 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.75 Total: -6.73 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.35 Total: -58.96 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.29 Total: -9.22 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.51 -9.05 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568408538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.631 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds