Wall clock time and date at job start Wed Apr 1 2020 04:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30010 * 127.33703 * 2 1 4 4 O 1.20657 * 112.30328 * 180.02562 * 3 2 1 5 5 C 1.33491 * 113.15656 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.83151 * 180.02562 * 5 4 3 7 7 C 1.53004 * 117.49930 * 8.59851 * 6 5 4 8 8 C 1.53003 * 117.50095 * 299.97485 * 6 5 4 9 9 C 1.37365 * 106.34389 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56843 * 179.73701 * 9 5 4 11 11 O 1.21604 * 120.00083 * 90.00014 * 10 9 5 12 12 N 1.34779 * 119.99989 * 270.00533 * 10 9 5 13 13 C 1.46923 * 120.63108 * 359.97438 * 12 10 9 14 14 C 1.53191 * 108.77745 * 126.37130 * 13 12 10 15 15 C 1.53043 * 109.31117 * 54.63496 * 14 13 12 16 16 C 1.53040 * 109.53564 * 298.63782 * 15 14 13 17 17 H 1.08996 * 109.50006 * 301.40826 * 16 15 14 18 18 C 1.53000 * 109.49654 * 181.31558 * 16 15 14 19 19 H 1.09006 * 109.47334 * 60.00143 * 18 16 15 20 20 C 1.53001 * 109.47278 * 300.00420 * 18 16 15 21 21 N 1.46498 * 109.47714 * 179.97438 * 18 16 15 22 22 C 1.36933 * 120.00357 * 205.00046 * 21 18 16 23 23 H 1.07996 * 120.00232 * 359.97438 * 22 21 18 24 24 C 1.38819 * 120.00005 * 179.97438 * 22 21 18 25 25 N 1.31623 * 119.99869 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00006 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47510 * 89.99754 * 26 24 22 28 28 H 1.48498 * 109.47232 * 209.99895 * 26 24 22 29 29 H 1.48500 * 109.47121 * 329.99395 * 26 24 22 30 30 C 1.46927 * 120.62973 * 179.72057 * 12 10 9 31 31 H 1.08999 * 109.46835 * 269.97871 * 1 2 3 32 32 H 1.09002 * 109.47070 * 29.97411 * 1 2 3 33 33 H 1.09001 * 109.47058 * 149.97701 * 1 2 3 34 34 H 1.09004 * 115.55533 * 154.30162 * 6 5 4 35 35 H 1.09002 * 117.49850 * 359.97438 * 7 6 5 36 36 H 1.09005 * 117.50058 * 145.02084 * 7 6 5 37 37 H 1.09000 * 117.50096 * 214.97540 * 8 6 5 38 38 H 1.09002 * 117.49451 * 359.97438 * 8 6 5 39 39 H 1.09005 * 109.59214 * 246.16033 * 13 12 10 40 40 H 1.09004 * 109.58768 * 6.44220 * 13 12 10 41 41 H 1.08998 * 109.50456 * 174.58668 * 14 13 12 42 42 H 1.09001 * 109.49758 * 294.65948 * 14 13 12 43 43 H 1.08993 * 109.45996 * 58.65580 * 15 14 13 44 44 H 1.08998 * 109.45910 * 178.61563 * 15 14 13 45 45 H 1.09004 * 109.47483 * 180.02562 * 20 18 16 46 46 H 1.09003 * 109.47061 * 299.99430 * 20 18 16 47 47 H 1.09000 * 109.47400 * 59.99526 * 20 18 16 48 48 H 0.97006 * 119.99420 * 25.00057 * 21 18 16 49 49 H 0.96997 * 120.00065 * 179.97438 * 25 24 22 50 50 H 1.08997 * 109.58890 * 353.41504 * 30 12 10 51 51 H 1.09004 * 109.58571 * 113.83970 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 -0.0004 6 6 4.9711 -1.3247 -0.0003 7 6 6.2354 -0.4871 0.2024 8 6 5.9165 -1.0695 -1.1760 9 6 2.3991 -1.1697 -0.0003 10 6 2.0400 -2.5992 -0.0054 11 8 1.8939 -3.1932 1.0456 12 7 1.8737 -3.2481 -1.1750 13 6 2.0463 -2.5439 -2.4529 14 6 3.0538 -3.3169 -3.3097 15 6 2.5903 -4.7688 -3.4497 16 6 2.5301 -5.4223 -2.0671 17 1 3.5140 -5.3777 -1.6004 18 6 2.0982 -6.8830 -2.2112 19 1 2.8181 -7.4151 -2.8332 20 6 0.7161 -6.9442 -2.8647 21 7 2.0413 -7.5083 -0.8876 22 6 2.1876 -8.8642 -0.7640 23 1 2.3445 -9.4727 -1.6423 24 6 2.1341 -9.4566 0.4903 25 7 1.9433 -8.7149 1.5608 26 14 2.3344 -11.3061 0.6590 27 1 3.7714 -11.6341 0.8393 28 1 1.5665 -11.7817 1.8377 29 1 1.8243 -11.9730 -0.5659 30 6 1.5217 -4.6744 -1.1963 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 4.9579 -2.3277 0.4262 35 1 6.1111 0.5877 0.3354 36 1 7.0541 -0.9389 0.7626 37 1 6.5254 -1.9044 -1.5227 38 1 5.5821 -0.3783 -1.9497 39 1 1.0898 -2.4902 -2.9728 40 1 2.4184 -1.5362 -2.2675 41 1 3.1190 -2.8591 -4.2967 42 1 4.0330 -3.2918 -2.8315 43 1 1.6006 -4.7916 -3.9055 44 1 3.2926 -5.3150 -4.0793 45 1 0.4083 -7.9849 -2.9669 46 1 -0.0038 -6.4123 -2.2426 47 1 0.7589 -6.4791 -3.8495 48 1 1.8999 -6.9618 -0.0987 49 1 1.9055 -9.1289 2.4372 50 1 1.5501 -5.0730 -0.1822 51 1 0.5215 -4.7977 -1.6117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568408538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:22 Heat of formation + Delta-G solvation = 39.011003 kcal Electronic energy + Delta-G solvation = -32148.112017 eV Core-core repulsion = 28050.956881 eV Total energy + Delta-G solvation = -4097.155136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.01826 -41.36738 -39.23560 -38.37343 -36.96070 -35.71116 -34.62592 -33.25198 -32.80978 -31.42530 -29.86626 -29.44992 -27.23554 -26.29260 -25.04311 -24.63783 -24.47487 -23.32377 -22.42201 -21.27420 -20.49843 -19.81166 -19.30349 -18.91854 -18.61628 -17.70134 -17.24194 -16.89370 -16.69637 -16.02565 -15.88207 -15.49719 -15.36737 -15.31563 -14.92598 -14.52960 -14.36805 -14.32597 -14.20192 -14.03241 -13.92810 -13.85568 -13.36198 -13.09222 -12.98696 -12.83342 -12.64894 -12.56072 -12.43272 -12.36283 -12.19620 -12.11042 -11.90924 -11.78075 -11.76019 -11.47130 -11.46780 -11.24311 -11.16744 -10.95313 -10.90971 -10.21810 -9.70885 -8.98943 -7.90977 -5.20073 0.13127 0.75745 1.23226 1.45928 1.47966 1.56359 1.56791 1.99789 2.57281 2.78619 2.96064 3.08135 3.42042 3.44779 3.58857 3.74026 3.81196 3.87824 3.92684 3.96737 4.06883 4.12666 4.17963 4.28006 4.39819 4.40796 4.46821 4.51317 4.56076 4.64458 4.65899 4.71798 4.73650 4.82121 4.87734 4.89749 4.91838 5.01498 5.03739 5.11801 5.13322 5.15756 5.19403 5.26342 5.37808 5.44491 5.49765 5.56450 5.70962 6.24929 6.30265 6.95590 7.07659 7.35529 8.14666 8.35120 9.32428 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.002981 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.212183 B = 9389.896729 C = 9571.497588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.367 5.367 4 O 0.097 5.903 5 C 0.065 3.935 6 C -0.125 4.125 7 C -0.149 4.149 8 C -0.133 4.133 9 C -0.259 4.259 10 C 0.595 3.405 11 O -0.577 6.577 12 N -0.588 5.588 13 C 0.105 3.895 14 C -0.125 4.125 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.048 0.952 18 C 0.172 3.828 19 H 0.049 0.951 20 C -0.158 4.158 21 N -0.741 5.741 22 C -0.235 4.235 23 H 0.079 0.921 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.971 3.029 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.266 1.266 30 C 0.124 3.876 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.042 0.958 47 H 0.083 0.917 48 H 0.370 0.630 49 H 0.248 0.752 50 H 0.050 0.950 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 22.068 -14.263 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.075 5.075 4 O 0.037 5.963 5 C 0.002 3.998 6 C -0.145 4.145 7 C -0.186 4.186 8 C -0.170 4.170 9 C -0.267 4.267 10 C 0.382 3.618 11 O -0.457 6.457 12 N -0.319 5.319 13 C -0.017 4.017 14 C -0.163 4.163 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.067 0.933 18 C 0.064 3.936 19 H 0.067 0.933 20 C -0.217 4.217 21 N -0.382 5.382 22 C -0.366 4.366 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.800 3.200 27 H -0.216 1.216 28 H -0.227 1.227 29 H -0.191 1.191 30 C 0.002 3.998 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.202 0.798 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.145 22.892 -13.807 27.053 hybrid contribution -0.304 -2.081 1.526 2.599 sum 3.841 20.811 -12.281 24.468 Atomic orbital electron populations 1.20355 0.83432 1.05221 1.04538 1.25103 0.99650 0.85780 1.00105 1.73595 0.89247 1.23304 1.21359 1.84475 1.21379 1.22181 1.68239 1.23774 0.95822 0.83182 0.97063 1.20553 0.84276 0.99241 1.10409 1.23228 0.95205 1.00215 0.99920 1.23255 0.98464 1.04050 0.91223 1.21625 0.93718 0.94326 1.16987 1.17260 0.76361 0.84694 0.83523 1.90869 1.52740 1.68823 1.33272 1.48122 1.67199 1.10406 1.06170 1.22023 1.01326 0.95833 0.82470 1.21903 0.98237 0.95040 1.01126 1.21612 1.03308 0.95468 0.94133 1.21521 0.97611 0.94321 0.97480 0.93326 1.20474 0.95662 0.91114 0.86363 0.93319 1.22408 0.98177 1.00613 1.00547 1.42804 1.86846 1.04475 1.04100 1.19654 1.39100 0.85236 0.92660 0.90361 1.25571 1.04121 1.02061 0.95457 1.69867 1.59007 1.35734 0.97812 0.85174 0.77184 0.80585 0.77059 1.21569 1.22679 1.19089 1.21532 0.98884 0.78834 1.00585 0.89417 0.87691 0.89554 0.86350 0.86972 0.86151 0.85946 0.86753 0.89103 0.89758 0.87165 0.91904 0.89778 0.90223 0.94868 0.93899 0.89883 0.79775 0.94350 0.93134 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.49 71.24 0.75 -0.68 16 2 C 0.06 1.35 7.59 45.16 0.34 1.70 16 3 N -0.37 -8.98 12.01 -44.78 -0.54 -9.52 16 4 O 0.10 2.22 10.86 77.01 0.84 3.06 16 5 C 0.06 1.52 6.90 25.48 0.18 1.70 16 6 C -0.13 -2.43 6.15 -11.54 -0.07 -2.50 16 7 C -0.15 -1.93 10.18 30.60 0.31 -1.62 16 8 C -0.13 -1.59 10.23 30.60 0.31 -1.27 16 9 C -0.26 -7.09 4.22 -18.74 -0.08 -7.17 16 10 C 0.59 20.00 7.52 86.65 0.65 20.65 16 11 O -0.58 -26.11 16.52 -4.04 -0.07 -26.18 16 12 N -0.59 -16.48 2.98 -823.58 -2.45 -18.93 16 13 C 0.10 1.89 6.34 86.36 0.55 2.43 16 14 C -0.13 -1.90 6.08 30.67 0.19 -1.71 16 15 C -0.11 -2.10 4.78 30.62 0.15 -1.95 16 16 C -0.09 -2.74 2.32 -10.85 -0.03 -2.77 16 17 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 18 C 0.17 6.46 2.72 44.99 0.12 6.58 16 19 H 0.05 1.83 8.08 -2.38 -0.02 1.82 16 20 C -0.16 -5.12 8.79 71.98 0.63 -4.49 16 21 N -0.74 -37.91 5.04 -322.93 -1.63 -39.54 16 22 C -0.23 -13.19 9.93 84.04 0.83 -12.35 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 25 N -0.97 -62.63 13.06 21.65 0.28 -62.34 16 26 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 C 0.12 4.15 5.21 86.23 0.45 4.59 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.11 1.32 8.02 -2.39 -0.02 1.30 16 36 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.43 6.26 -2.38 -0.01 1.41 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.42 6.50 -2.39 -0.02 1.41 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.04 1.43 6.32 -2.39 -0.02 1.41 16 47 H 0.08 1.97 6.46 -2.39 -0.02 1.95 16 48 H 0.37 21.05 6.17 -92.70 -0.57 20.48 16 49 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 50 H 0.05 2.26 5.59 -2.39 -0.01 2.25 16 51 H 0.08 2.57 6.16 -2.39 -0.01 2.55 16 Total: -1.00 -78.56 407.82 4.59 -73.98 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.38 Total: 33.23 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.75 Total: -3.14 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -4.34 Total: -130.33 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.77 Total: -23.12 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -78.56 4.59 -73.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568408538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.987 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds