Wall clock time and date at job start Wed Apr 1 2020 04:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41383 * 126.80104 * 2 1 4 4 C 1.35449 * 103.98899 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.77877 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.54931 * 65.25200 * 5 4 3 7 7 O 1.21278 * 120.00245 * 209.81840 * 6 5 4 8 8 N 1.34782 * 119.99837 * 29.82715 * 6 5 4 9 9 C 1.46496 * 119.99806 * 184.77872 * 8 6 5 10 10 H 1.08999 * 109.47303 * 18.09050 * 9 8 6 11 11 C 1.53000 * 109.47353 * 138.09140 * 9 8 6 12 12 N 1.46494 * 109.46920 * 304.99869 * 11 9 8 13 13 C 1.36939 * 119.99983 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99937 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00414 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46665 * 90.00120 * 17 15 13 19 19 H 1.48497 * 109.47204 * 210.00368 * 17 15 13 20 20 H 1.48505 * 109.46554 * 330.00569 * 17 15 13 21 21 C 1.53004 * 109.47211 * 258.09419 * 9 8 6 22 22 C 1.54260 * 110.03548 * 179.49501 * 21 9 8 23 23 C 1.54958 * 104.16377 * 217.13261 * 22 21 9 24 24 C 1.54893 * 102.77702 * 37.88782 * 23 22 21 25 25 C 1.53874 * 110.03598 * 62.27370 * 21 9 8 26 26 C 1.52995 * 117.51937 * 210.95641 * 5 4 3 27 27 C 1.52990 * 60.00327 * 107.48137 * 26 5 4 28 28 O 1.34042 * 106.44294 * 0.23921 * 4 3 2 29 29 N 1.20920 * 111.56863 * 359.56853 * 28 4 3 30 30 H 1.09003 * 109.47728 * 90.00626 * 1 2 3 31 31 H 1.09010 * 109.46699 * 209.99515 * 1 2 3 32 32 H 1.09000 * 109.47495 * 329.99505 * 1 2 3 33 33 H 1.08000 * 128.00644 * 359.96631 * 3 2 1 34 34 H 0.96994 * 120.00060 * 4.77595 * 8 6 5 35 35 H 1.09001 * 109.47162 * 184.99680 * 11 9 8 36 36 H 1.09003 * 109.46806 * 64.99657 * 11 9 8 37 37 H 0.97001 * 120.00428 * 359.97438 * 12 11 9 38 38 H 0.97003 * 120.00024 * 179.97438 * 16 15 13 39 39 H 1.09002 * 110.01148 * 300.88913 * 21 9 8 40 40 H 1.09005 * 110.48547 * 335.78502 * 22 21 9 41 41 H 1.09008 * 110.48799 * 98.42398 * 22 21 9 42 42 H 1.08998 * 110.72008 * 279.57850 * 23 22 21 43 43 H 1.08999 * 110.92738 * 156.29281 * 23 22 21 44 44 H 1.08996 * 110.48957 * 203.40677 * 24 23 22 45 45 H 1.08997 * 110.59758 * 80.81703 * 24 23 22 46 46 H 1.08995 * 110.03476 * 238.57666 * 25 21 9 47 47 H 1.09008 * 110.02730 * 359.95657 * 25 21 9 48 48 H 1.09001 * 117.50306 * 214.97520 * 26 5 4 49 49 H 1.09010 * 117.50004 * 359.97438 * 26 5 4 50 50 H 1.09003 * 117.49932 * 252.51217 * 27 26 5 51 51 H 1.09001 * 117.50240 * 107.49078 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 0.0006 5 6 4.9021 1.3697 0.0003 6 6 5.1743 2.1904 1.2346 7 8 5.8362 3.2036 1.1554 8 7 4.6823 1.7984 2.4266 9 6 4.8572 2.6486 3.6066 10 1 5.1042 3.6622 3.2908 11 6 3.5599 2.6690 4.4174 12 7 2.4518 3.0871 3.5553 13 6 1.1843 3.1791 4.0655 14 1 1.0017 2.9438 5.1036 15 6 0.1344 3.5758 3.2488 16 7 0.3570 3.8631 1.9837 17 14 -1.5945 3.7020 3.9450 18 1 -1.8160 5.0717 4.4744 19 1 -2.5819 3.4202 2.8722 20 1 -1.7596 2.7146 5.0418 21 6 5.9907 2.0937 4.4717 22 6 6.1945 2.9872 5.7125 23 6 7.7292 2.9945 5.9265 24 6 8.2769 3.0301 4.4781 25 6 7.3141 2.1204 3.6872 26 6 6.1008 0.7236 -0.6970 27 6 5.3973 1.9212 -1.3382 28 8 3.4537 -0.7252 -0.0045 29 7 2.2868 -1.0423 0.0006 30 1 -0.3635 -0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 2.0708 2.1743 -0.0005 34 1 4.2124 0.9533 2.5030 35 1 3.6602 3.3701 5.2460 36 1 3.3599 1.6712 4.8080 37 1 2.6158 3.2988 2.6230 38 1 -0.3768 4.1400 1.4129 39 1 5.7598 1.0739 4.7797 40 1 5.8316 3.9967 5.5195 41 1 5.6899 2.5584 6.5785 42 1 8.0515 2.0881 6.4391 43 1 8.0411 3.8807 6.4792 44 1 9.2914 2.6330 4.4439 45 1 8.2523 4.0459 4.0837 46 1 7.7260 1.1139 3.6152 47 1 7.1488 2.5281 2.6898 48 1 7.0864 0.8919 -0.2630 49 1 5.9498 -0.2539 -1.1554 50 1 4.7831 1.7320 -2.2186 51 1 5.9199 2.8777 -1.3260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569609565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:19 Heat of formation + Delta-G solvation = 47.472570 kcal Electronic energy + Delta-G solvation = -32648.648796 eV Core-core repulsion = 28551.860581 eV Total energy + Delta-G solvation = -4096.788215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.61451 -40.23855 -38.40568 -36.49454 -35.35081 -34.40366 -33.58322 -31.48033 -30.93287 -29.65949 -28.51864 -28.30778 -26.37005 -24.83340 -23.20652 -23.01540 -22.31166 -21.44247 -20.77286 -20.39976 -19.72701 -18.98331 -17.83636 -17.25130 -17.15432 -16.20846 -16.13446 -15.40188 -15.32920 -14.89068 -14.58664 -14.23424 -13.97865 -13.53681 -13.34478 -13.21701 -13.13477 -13.00876 -12.96927 -12.62095 -12.56291 -12.18652 -12.10509 -11.65298 -11.37038 -11.29900 -11.21153 -11.00685 -10.95599 -10.90896 -10.85857 -10.82414 -10.59194 -10.47943 -10.42116 -10.29284 -10.05949 -9.76913 -9.75285 -9.59336 -8.97333 -8.90839 -8.61051 -6.95309 -5.79916 -3.07838 1.68496 2.50905 2.61134 3.23746 3.38859 3.41537 3.45814 3.46119 3.74757 4.46912 4.52753 4.55964 4.64875 4.74299 4.77157 4.82008 4.88996 5.04201 5.27370 5.33742 5.50713 5.52461 5.55500 5.58596 5.60137 5.64405 5.68770 5.76727 5.77471 5.79349 5.81883 5.89215 5.93253 5.94832 6.02323 6.03591 6.05884 6.12249 6.19818 6.29841 6.34419 6.39382 6.42620 6.47265 6.59859 6.60730 6.67123 6.93699 7.66404 7.78891 8.38170 8.45299 8.56300 9.50538 10.06639 10.43218 11.42202 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007334 B = 0.005397 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.951651 B = 5187.179029 C = 8043.845438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.029 3.971 3 C -0.171 4.171 4 C -0.026 4.026 5 C -0.087 4.087 6 C 0.565 3.435 7 O -0.536 6.536 8 N -0.699 5.699 9 C 0.141 3.859 10 H 0.097 0.903 11 C 0.143 3.857 12 N -0.727 5.727 13 C -0.237 4.237 14 H 0.068 0.932 15 C -0.008 4.008 16 N -0.928 5.928 17 Si 0.901 3.099 18 H -0.291 1.291 19 H -0.291 1.291 20 H -0.284 1.284 21 C -0.097 4.097 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.140 4.140 27 C -0.122 4.122 28 O 0.095 5.905 29 N -0.373 5.373 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.182 0.818 34 H 0.400 0.600 35 H 0.034 0.966 36 H 0.020 0.980 37 H 0.385 0.615 38 H 0.253 0.747 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.106 0.894 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.710 -6.504 -2.743 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.129 4.129 3 C -0.192 4.192 4 C -0.089 4.089 5 C -0.091 4.091 6 C 0.350 3.650 7 O -0.413 6.413 8 N -0.347 5.347 9 C 0.037 3.963 10 H 0.115 0.885 11 C 0.015 3.985 12 N -0.372 5.372 13 C -0.368 4.368 14 H 0.086 0.914 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.733 3.267 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.210 1.210 21 C -0.117 4.117 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.166 4.166 26 C -0.177 4.177 27 C -0.160 4.160 28 O 0.028 5.972 29 N -0.078 5.078 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.199 0.801 34 H 0.235 0.765 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.219 0.781 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.102 0.898 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.124 0.876 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.773 -7.099 -2.666 14.854 hybrid contribution -1.567 0.521 0.286 1.676 sum 11.205 -6.578 -2.380 13.210 Atomic orbital electron populations 1.20189 0.86024 1.04501 1.02694 1.23547 0.99079 0.88551 1.01734 1.22637 0.90195 1.02158 1.04250 1.22817 0.95570 0.83553 1.06999 1.19353 0.91321 1.02788 0.95647 1.18862 0.78846 0.84273 0.83037 1.90671 1.39949 1.25124 1.85604 1.45756 1.56987 1.23994 1.07948 1.21487 0.95046 0.95239 0.84530 0.88525 1.21011 0.86519 0.97623 0.93388 1.42274 1.03184 1.81442 1.10259 1.19187 0.84737 1.38066 0.94841 0.91437 1.24642 0.97629 1.02335 0.95831 1.69647 1.30873 1.52506 1.04649 0.86280 0.84968 0.77728 0.77742 1.21840 1.21779 1.20955 1.22117 0.94781 0.99658 0.95173 1.22400 0.95653 1.00307 0.97026 1.22500 0.95787 1.01150 0.96728 1.22321 0.98216 1.00143 0.95272 1.22333 0.94323 0.99212 1.00693 1.23100 0.94865 0.98479 1.01292 1.23143 1.01275 0.99379 0.92165 1.84752 1.21786 1.22372 1.68298 1.73792 0.89236 1.24069 1.20718 0.90802 0.91120 0.88699 0.80077 0.76540 0.94801 0.96247 0.78078 0.93675 0.91130 0.91015 0.91532 0.91940 0.91908 0.92397 0.91695 0.92784 0.89821 0.87323 0.87237 0.87585 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.47 36.00 0.38 -0.81 16 2 C 0.03 0.50 7.33 -82.10 -0.60 -0.10 16 3 C -0.17 -2.99 11.06 -39.38 -0.44 -3.43 16 4 C -0.03 -0.40 5.57 -35.31 -0.20 -0.60 16 5 C -0.09 -1.19 2.52 -156.82 -0.39 -1.59 16 6 C 0.56 9.09 6.69 -10.98 -0.07 9.02 16 7 O -0.54 -9.74 13.91 5.56 0.08 -9.67 16 8 N -0.70 -11.15 4.02 -53.81 -0.22 -11.37 16 9 C 0.14 2.31 1.74 -67.93 -0.12 2.19 16 10 H 0.10 1.81 7.16 -51.93 -0.37 1.43 16 11 C 0.14 2.75 5.60 -4.04 -0.02 2.72 16 12 N -0.73 -17.45 5.43 -59.91 -0.33 -17.78 16 13 C -0.24 -6.34 9.99 -15.06 -0.15 -6.49 16 14 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 16 N -0.93 -25.84 13.06 55.49 0.72 -25.11 16 17 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.10 -1.30 2.70 -89.50 -0.24 -1.54 16 22 C -0.12 -1.43 5.36 -25.04 -0.13 -1.57 16 23 C -0.12 -1.33 6.91 -24.70 -0.17 -1.50 16 24 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 25 C -0.13 -1.65 6.21 -25.61 -0.16 -1.80 16 26 C -0.14 -1.48 9.94 -26.74 -0.27 -1.74 16 27 C -0.12 -1.41 9.75 -26.74 -0.26 -1.67 16 28 O 0.09 1.50 11.20 17.17 0.19 1.70 16 29 N -0.37 -6.41 12.07 33.42 0.40 -6.01 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.18 3.53 8.06 -52.49 -0.42 3.11 16 34 H 0.40 6.45 8.00 -40.82 -0.33 6.12 16 35 H 0.03 0.66 7.29 -51.93 -0.38 0.28 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.39 9.83 7.33 -40.82 -0.30 9.53 16 38 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16 41 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.08 1.24 4.81 -51.92 -0.25 0.99 16 48 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.11 1.01 8.14 -51.92 -0.42 0.59 16 50 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.12 1.42 7.68 -51.93 -0.40 1.02 16 LS Contribution 412.80 15.07 6.22 6.22 Total: -1.00 -29.22 412.80 -9.37 -38.59 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -8.31 Total: 17.62 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.11 Total: -10.81 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.59 Total: -60.26 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.27 Total: -7.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -29.22 -9.37 -38.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569609565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.064 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds