Wall clock time and date at job start Wed Apr 1 2020 04:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41383 * 126.80104 * 2 1 4 4 C 1.35449 * 103.98899 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.77877 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.54931 * 65.25200 * 5 4 3 7 7 O 1.21278 * 120.00245 * 209.81840 * 6 5 4 8 8 N 1.34782 * 119.99837 * 29.82715 * 6 5 4 9 9 C 1.46496 * 119.99806 * 184.77872 * 8 6 5 10 10 H 1.08999 * 109.47303 * 18.09050 * 9 8 6 11 11 C 1.53000 * 109.47353 * 138.09140 * 9 8 6 12 12 N 1.46494 * 109.46920 * 304.99869 * 11 9 8 13 13 C 1.36939 * 119.99983 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99937 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00414 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46665 * 90.00120 * 17 15 13 19 19 H 1.48497 * 109.47204 * 210.00368 * 17 15 13 20 20 H 1.48505 * 109.46554 * 330.00569 * 17 15 13 21 21 C 1.53004 * 109.47211 * 258.09419 * 9 8 6 22 22 C 1.54260 * 110.03548 * 179.49501 * 21 9 8 23 23 C 1.54958 * 104.16377 * 217.13261 * 22 21 9 24 24 C 1.54893 * 102.77702 * 37.88782 * 23 22 21 25 25 C 1.53874 * 110.03598 * 62.27370 * 21 9 8 26 26 C 1.52995 * 117.51937 * 210.95641 * 5 4 3 27 27 C 1.52990 * 60.00327 * 107.48137 * 26 5 4 28 28 O 1.34042 * 106.44294 * 0.23921 * 4 3 2 29 29 N 1.20920 * 111.56863 * 359.56853 * 28 4 3 30 30 H 1.09003 * 109.47728 * 90.00626 * 1 2 3 31 31 H 1.09010 * 109.46699 * 209.99515 * 1 2 3 32 32 H 1.09000 * 109.47495 * 329.99505 * 1 2 3 33 33 H 1.08000 * 128.00644 * 359.96631 * 3 2 1 34 34 H 0.96994 * 120.00060 * 4.77595 * 8 6 5 35 35 H 1.09001 * 109.47162 * 184.99680 * 11 9 8 36 36 H 1.09003 * 109.46806 * 64.99657 * 11 9 8 37 37 H 0.97001 * 120.00428 * 359.97438 * 12 11 9 38 38 H 0.97003 * 120.00024 * 179.97438 * 16 15 13 39 39 H 1.09002 * 110.01148 * 300.88913 * 21 9 8 40 40 H 1.09005 * 110.48547 * 335.78502 * 22 21 9 41 41 H 1.09008 * 110.48799 * 98.42398 * 22 21 9 42 42 H 1.08998 * 110.72008 * 279.57850 * 23 22 21 43 43 H 1.08999 * 110.92738 * 156.29281 * 23 22 21 44 44 H 1.08996 * 110.48957 * 203.40677 * 24 23 22 45 45 H 1.08997 * 110.59758 * 80.81703 * 24 23 22 46 46 H 1.08995 * 110.03476 * 238.57666 * 25 21 9 47 47 H 1.09008 * 110.02730 * 359.95657 * 25 21 9 48 48 H 1.09001 * 117.50306 * 214.97520 * 26 5 4 49 49 H 1.09010 * 117.50004 * 359.97438 * 26 5 4 50 50 H 1.09003 * 117.49932 * 252.51217 * 27 26 5 51 51 H 1.09001 * 117.50240 * 107.49078 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 0.0006 5 6 4.9021 1.3697 0.0003 6 6 5.1743 2.1904 1.2346 7 8 5.8362 3.2036 1.1554 8 7 4.6823 1.7984 2.4266 9 6 4.8572 2.6486 3.6066 10 1 5.1042 3.6622 3.2908 11 6 3.5599 2.6690 4.4174 12 7 2.4518 3.0871 3.5553 13 6 1.1843 3.1791 4.0655 14 1 1.0017 2.9438 5.1036 15 6 0.1344 3.5758 3.2488 16 7 0.3570 3.8631 1.9837 17 14 -1.5945 3.7020 3.9450 18 1 -1.8160 5.0717 4.4744 19 1 -2.5819 3.4202 2.8722 20 1 -1.7596 2.7146 5.0418 21 6 5.9907 2.0937 4.4717 22 6 6.1945 2.9872 5.7125 23 6 7.7292 2.9945 5.9265 24 6 8.2769 3.0301 4.4781 25 6 7.3141 2.1204 3.6872 26 6 6.1008 0.7236 -0.6970 27 6 5.3973 1.9212 -1.3382 28 8 3.4537 -0.7252 -0.0045 29 7 2.2868 -1.0423 0.0006 30 1 -0.3635 -0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 2.0708 2.1743 -0.0005 34 1 4.2124 0.9533 2.5030 35 1 3.6602 3.3701 5.2460 36 1 3.3599 1.6712 4.8080 37 1 2.6158 3.2988 2.6230 38 1 -0.3768 4.1400 1.4129 39 1 5.7598 1.0739 4.7797 40 1 5.8316 3.9967 5.5195 41 1 5.6899 2.5584 6.5785 42 1 8.0515 2.0881 6.4391 43 1 8.0411 3.8807 6.4792 44 1 9.2914 2.6330 4.4439 45 1 8.2523 4.0459 4.0837 46 1 7.7260 1.1139 3.6152 47 1 7.1488 2.5281 2.6898 48 1 7.0864 0.8919 -0.2630 49 1 5.9498 -0.2539 -1.1554 50 1 4.7831 1.7320 -2.2186 51 1 5.9199 2.8777 -1.3260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569609565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:18 Heat of formation + Delta-G solvation = 31.899469 kcal Electronic energy + Delta-G solvation = -32649.324097 eV Core-core repulsion = 28551.860581 eV Total energy + Delta-G solvation = -4097.463515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.94365 -41.48715 -39.51337 -37.60265 -36.86967 -35.72007 -35.24512 -33.09344 -32.36677 -31.06635 -29.59679 -29.50548 -27.82129 -26.18323 -24.86856 -24.27759 -23.38255 -22.81102 -22.08780 -21.40061 -20.90968 -20.21379 -19.27611 -18.91781 -18.56189 -17.48611 -17.35623 -16.76730 -16.59673 -16.19338 -15.97945 -15.56841 -15.17068 -15.14317 -14.88939 -14.75523 -14.28450 -14.21817 -14.13354 -13.99018 -13.92295 -13.64120 -13.36666 -12.97696 -12.85498 -12.61929 -12.58485 -12.38138 -12.32972 -12.14200 -11.95241 -11.88646 -11.87714 -11.80750 -11.66283 -11.55007 -11.43238 -11.41417 -11.00307 -10.91878 -10.88872 -10.24065 -9.93579 -8.94594 -7.88424 -5.16813 0.39139 1.24930 1.31105 1.46852 1.48409 1.55282 1.99090 2.15968 2.56833 2.69159 3.23740 3.38795 3.43944 3.50554 3.63734 3.71866 3.76477 3.84239 3.91752 4.11593 4.15667 4.19006 4.30122 4.36044 4.56874 4.58267 4.62404 4.62845 4.66504 4.68071 4.72217 4.74906 4.83773 4.84284 4.89005 4.90622 4.92410 4.97978 5.06134 5.13441 5.15608 5.17635 5.25424 5.29724 5.34351 5.50036 5.52673 5.53286 5.63151 6.31033 6.47882 7.16270 7.25228 7.39197 8.10843 8.37407 9.33081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007334 B = 0.005397 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.951651 B = 5187.179029 C = 8043.845438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.018 3.982 3 C -0.197 4.197 4 C 0.001 3.999 5 C -0.113 4.113 6 C 0.563 3.437 7 O -0.560 6.560 8 N -0.698 5.698 9 C 0.155 3.845 10 H 0.070 0.930 11 C 0.144 3.856 12 N -0.736 5.736 13 C -0.247 4.247 14 H 0.068 0.932 15 C -0.057 4.057 16 N -0.950 5.950 17 Si 0.959 3.041 18 H -0.294 1.294 19 H -0.292 1.292 20 H -0.276 1.276 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.110 4.110 27 C -0.117 4.117 28 O 0.104 5.896 29 N -0.382 5.382 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.400 0.600 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.121 0.879 49 H 0.130 0.870 50 H 0.120 0.880 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 -8.049 -2.360 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.139 4.139 3 C -0.218 4.218 4 C -0.063 4.063 5 C -0.117 4.117 6 C 0.350 3.650 7 O -0.440 6.440 8 N -0.345 5.345 9 C 0.050 3.950 10 H 0.088 0.912 11 C 0.017 3.983 12 N -0.379 5.379 13 C -0.379 4.379 14 H 0.086 0.914 15 C -0.251 4.251 16 N -0.599 5.599 17 Si 0.790 3.210 18 H -0.221 1.221 19 H -0.219 1.219 20 H -0.202 1.202 21 C -0.110 4.110 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.154 4.154 28 O 0.037 5.963 29 N -0.087 5.087 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.174 0.826 34 H 0.234 0.766 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.139 0.861 49 H 0.149 0.851 50 H 0.138 0.862 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.222 -8.663 -2.254 16.805 hybrid contribution -1.969 1.036 0.179 2.232 sum 12.253 -7.627 -2.075 14.581 Atomic orbital electron populations 1.20182 0.85149 1.03660 1.04021 1.23791 0.99904 0.88491 1.01721 1.22414 0.91557 1.01157 1.06700 1.22892 0.95541 0.83216 1.04641 1.19367 0.92233 1.04373 0.95763 1.19190 0.78242 0.84083 0.83496 1.90657 1.41191 1.26169 1.85985 1.45743 1.56957 1.23740 1.08095 1.21270 0.94573 0.94387 0.84782 0.91219 1.21126 0.86522 0.97423 0.93229 1.42391 1.03687 1.81609 1.10250 1.19477 0.85988 1.37524 0.94904 0.91359 1.25304 1.00731 1.02779 0.96244 1.69782 1.31403 1.53298 1.05462 0.85369 0.81158 0.77384 0.77138 1.22123 1.21879 1.20152 1.22075 0.93865 1.00035 0.95074 1.22419 0.97348 0.99164 0.96710 1.22475 0.94007 1.02437 0.96432 1.22317 0.98873 0.99225 0.95423 1.22277 0.94230 1.00149 0.99593 1.23293 0.93769 0.98864 0.98733 1.23263 1.01109 0.99972 0.91086 1.84732 1.21331 1.22336 1.67855 1.73773 0.89549 1.23990 1.21392 0.88444 0.90132 0.91148 0.82647 0.76593 0.94626 0.95702 0.79316 0.94127 0.90213 0.92616 0.90751 0.90386 0.90893 0.90593 0.92919 0.91424 0.91960 0.86080 0.85144 0.86219 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 10.47 71.23 0.75 -1.51 16 2 C 0.02 0.64 7.33 43.58 0.32 0.96 16 3 C -0.20 -7.08 11.06 22.40 0.25 -6.83 16 4 C 0.00 0.02 5.57 25.04 0.14 0.16 16 5 C -0.11 -3.03 2.52 -53.68 -0.14 -3.16 16 6 C 0.56 18.28 6.69 87.66 0.59 18.87 16 7 O -0.56 -20.78 13.91 -3.02 -0.04 -20.83 16 8 N -0.70 -22.53 4.02 -442.53 -1.78 -24.31 16 9 C 0.15 5.13 1.74 44.99 0.08 5.21 16 10 H 0.07 2.72 7.16 -2.39 -0.02 2.70 16 11 C 0.14 5.62 5.60 86.38 0.48 6.10 16 12 N -0.74 -36.27 5.43 -343.46 -1.87 -38.14 16 13 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16 14 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 15 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 16 N -0.95 -54.38 13.06 21.65 0.28 -54.10 16 17 Si 0.96 44.98 29.55 68.60 2.03 47.01 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.09 -2.34 2.70 -10.07 -0.03 -2.37 16 22 C -0.12 -2.79 5.36 31.69 0.17 -2.62 16 23 C -0.12 -2.23 6.91 31.91 0.22 -2.01 16 24 C -0.12 -2.55 6.83 31.67 0.22 -2.34 16 25 C -0.12 -3.04 6.21 31.32 0.19 -2.84 16 26 C -0.11 -2.02 9.94 30.59 0.30 -1.72 16 27 C -0.12 -2.54 9.75 30.59 0.30 -2.24 16 28 O 0.10 3.18 11.20 71.62 0.80 3.98 16 29 N -0.38 -12.85 12.07 -49.56 -0.60 -13.44 16 30 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.16 6.48 8.06 -2.91 -0.02 6.46 16 34 H 0.40 12.94 8.00 -92.71 -0.74 12.20 16 35 H 0.04 1.39 7.29 -2.39 -0.02 1.38 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.37 19.88 7.33 -92.71 -0.68 19.20 16 38 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 1.49 7.64 -2.38 -0.02 1.47 16 41 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 1.82 4.81 -2.38 -0.01 1.81 16 48 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 50 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.12 2.65 7.68 -2.39 -0.02 2.63 16 Total: -1.00 -63.72 412.80 3.50 -60.22 By element: Atomic # 1 Polarization: 51.65 SS G_CDS: -0.47 Total: 51.17 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.15 Total: -11.56 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -3.96 Total: -129.99 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.76 Total: -16.84 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.72 3.50 -60.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569609565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.117 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds