Wall clock time and date at job start Wed Apr 1 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.41372 * 126.80382 * 2 1 4 4 C 1.35450 * 103.98758 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77995 * 179.97438 * 4 3 2 6 6 C 1.50698 * 115.55233 * 240.58172 * 5 4 3 7 7 O 1.21281 * 119.99992 * 219.12559 * 6 5 4 8 8 N 1.34771 * 119.99896 * 39.39138 * 6 5 4 9 9 C 1.46508 * 120.00020 * 183.53875 * 8 6 5 10 10 H 1.08998 * 109.46477 * 330.57755 * 9 8 6 11 11 C 1.53002 * 109.46913 * 210.57851 * 9 8 6 12 12 N 1.46496 * 109.47047 * 54.99975 * 11 9 8 13 13 C 1.36940 * 119.99805 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.38807 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31621 * 119.99985 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99993 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47154 * 89.99725 * 17 15 13 19 19 H 1.48498 * 109.47001 * 210.00244 * 17 15 13 20 20 H 1.48500 * 109.46674 * 329.99766 * 17 15 13 21 21 C 1.52998 * 109.47167 * 90.57888 * 9 8 6 22 22 C 1.54265 * 110.03354 * 50.64599 * 21 9 8 23 23 C 1.54963 * 104.16323 * 217.13623 * 22 21 9 24 24 C 1.54891 * 102.77603 * 37.89126 * 23 22 21 25 25 C 1.53876 * 110.03330 * 293.43370 * 21 9 8 26 26 C 1.53011 * 117.51601 * 26.27728 * 5 4 3 27 27 C 1.52999 * 59.99818 * 107.48262 * 26 5 4 28 28 O 1.34043 * 106.44519 * 0.24268 * 4 3 2 29 29 N 1.20927 * 111.56333 * 359.56656 * 28 4 3 30 30 H 1.08997 * 109.47156 * 89.99674 * 1 2 3 31 31 H 1.09001 * 109.46977 * 209.99998 * 1 2 3 32 32 H 1.09001 * 109.46810 * 329.99104 * 1 2 3 33 33 H 1.08004 * 128.00907 * 359.97438 * 3 2 1 34 34 H 0.96999 * 120.00489 * 3.53764 * 8 6 5 35 35 H 1.09003 * 109.46476 * 174.99889 * 11 9 8 36 36 H 1.08997 * 109.46913 * 294.99667 * 11 9 8 37 37 H 0.96994 * 120.00550 * 359.97438 * 12 11 9 38 38 H 0.97003 * 119.99773 * 180.02562 * 16 15 13 39 39 H 1.08997 * 110.01971 * 172.04365 * 21 9 8 40 40 H 1.09005 * 110.48771 * 335.78591 * 22 21 9 41 41 H 1.09007 * 110.48395 * 98.43155 * 22 21 9 42 42 H 1.08999 * 110.72447 * 279.57714 * 23 22 21 43 43 H 1.09000 * 110.76697 * 156.22091 * 23 22 21 44 44 H 1.08996 * 110.48704 * 203.40512 * 24 23 22 45 45 H 1.08999 * 110.60152 * 80.81683 * 24 23 22 46 46 H 1.08998 * 110.03510 * 238.57232 * 25 21 9 47 47 H 1.09007 * 110.02989 * 359.97438 * 25 21 9 48 48 H 1.08991 * 117.49595 * 214.97262 * 26 5 4 49 49 H 1.09002 * 117.49366 * 359.97438 * 26 5 4 50 50 H 1.09002 * 117.50001 * 252.51279 * 27 26 5 51 51 H 1.09001 * 117.50210 * 107.48803 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1319 0.0000 4 6 3.6025 0.6067 0.0006 5 6 4.9023 1.3694 0.0003 6 6 5.8011 1.1216 -1.1836 7 8 7.0015 1.0453 -1.0282 8 7 5.2714 0.9901 -2.4159 9 6 6.1363 0.6723 -3.5549 10 1 7.1335 1.0750 -3.3773 11 6 5.5543 1.2936 -4.8262 12 7 5.3611 2.7314 -4.6227 13 6 4.8481 3.5028 -5.6312 14 1 4.5855 3.0510 -6.5764 15 6 4.6645 4.8651 -5.4383 16 7 4.9840 5.4155 -4.2862 17 14 3.9640 5.9172 -6.8138 18 1 2.4835 5.9542 -6.7037 19 1 4.5032 7.2966 -6.7055 20 1 4.3485 5.3370 -8.1255 21 6 6.2218 -0.8461 -3.7223 22 6 4.8051 -1.4564 -3.7399 23 6 4.9601 -2.7966 -2.9774 24 6 5.9579 -2.4353 -1.8491 25 6 6.9547 -1.4685 -2.5209 26 6 4.8961 2.7770 0.6001 27 6 5.5701 1.6278 1.3524 28 8 3.4538 -0.7254 -0.0046 29 7 2.2868 -1.0424 0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 2.0711 2.1743 -0.0004 34 1 4.3176 1.1058 -2.5488 35 1 6.2420 1.1332 -5.6566 36 1 4.5958 0.8266 -5.0528 37 1 5.5965 3.1371 -3.7737 38 1 4.8554 6.3674 -4.1512 39 1 6.7453 -1.0908 -4.6465 40 1 4.1018 -0.8031 -3.2235 41 1 4.4795 -1.6352 -4.7647 42 1 5.3757 -3.5653 -3.6290 43 1 4.0052 -3.1168 -2.5606 44 1 6.4726 -3.3283 -1.4947 45 1 5.4429 -1.9408 -1.0255 46 1 7.8334 -2.0158 -2.8622 47 1 7.2499 -0.6886 -1.8188 48 1 5.5420 3.5236 0.1384 49 1 3.9515 3.1517 0.9947 50 1 5.0691 1.2464 2.2422 51 1 6.6595 1.6184 1.3856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569609566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:23 Heat of formation + Delta-G solvation = 53.501863 kcal Electronic energy + Delta-G solvation = -32940.736383 eV Core-core repulsion = 28844.209618 eV Total energy + Delta-G solvation = -4096.526765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.98202 -40.37358 -38.37542 -36.49832 -35.32667 -34.79953 -33.50917 -31.56883 -31.09560 -29.66644 -28.78370 -28.46256 -26.35526 -25.05773 -23.42463 -23.05972 -22.27530 -21.63864 -21.32596 -20.27164 -19.32756 -19.06546 -18.09173 -17.59165 -17.17369 -16.30616 -15.94805 -15.81365 -15.18949 -14.86724 -14.54189 -14.39171 -14.19358 -13.59775 -13.50374 -13.47581 -13.26179 -13.22937 -13.12018 -12.94418 -12.73874 -12.40992 -12.11055 -11.69880 -11.60457 -11.49649 -11.19185 -11.03747 -10.92336 -10.85516 -10.82560 -10.65844 -10.61384 -10.43342 -10.31904 -10.18052 -10.06991 -10.00659 -9.82655 -9.74628 -9.22677 -8.92705 -8.55889 -6.96807 -5.80091 -3.09102 1.33593 2.13664 2.61199 2.78314 3.29458 3.40300 3.46173 3.47490 3.82393 4.09516 4.31000 4.53916 4.62519 4.71085 4.74910 4.81280 4.88502 4.91931 4.97924 5.14485 5.30704 5.33539 5.39213 5.50174 5.51413 5.52738 5.60812 5.61643 5.68357 5.70904 5.78856 5.79790 5.83666 5.87236 5.97968 6.00459 6.02549 6.06570 6.13405 6.14526 6.24063 6.38242 6.45064 6.49420 6.56208 6.69085 6.74389 6.95355 7.66391 7.80041 8.19863 8.38034 8.45648 9.50116 10.06205 10.42157 11.42286 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.004291 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.473984 B = 6523.939979 C = 7502.655630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.016 3.984 3 C -0.218 4.218 4 C 0.011 3.989 5 C -0.098 4.098 6 C 0.562 3.438 7 O -0.533 6.533 8 N -0.693 5.693 9 C 0.142 3.858 10 H 0.093 0.907 11 C 0.144 3.856 12 N -0.730 5.730 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.098 4.098 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.130 4.130 28 O 0.108 5.892 29 N -0.363 5.363 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.174 0.826 34 H 0.402 0.598 35 H 0.033 0.967 36 H 0.025 0.975 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.109 0.891 50 H 0.104 0.896 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 -12.313 11.557 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.143 4.143 3 C -0.239 4.239 4 C -0.053 4.053 5 C -0.102 4.102 6 C 0.347 3.653 7 O -0.411 6.411 8 N -0.342 5.342 9 C 0.038 3.962 10 H 0.111 0.889 11 C 0.016 3.984 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.119 4.119 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.178 4.178 26 C -0.162 4.162 27 C -0.167 4.167 28 O 0.041 5.959 29 N -0.067 5.067 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.192 0.808 34 H 0.237 0.763 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.114 0.886 48 H 0.137 0.863 49 H 0.127 0.873 50 H 0.123 0.877 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.746 -13.652 11.466 18.217 hybrid contribution -1.019 1.648 -0.760 2.082 sum -4.766 -12.003 10.706 16.775 Atomic orbital electron populations 1.20165 0.85944 1.03584 1.03569 1.23555 0.99014 0.88762 1.02935 1.22423 0.90729 1.01434 1.09316 1.22994 0.95484 0.83688 1.03113 1.19414 0.92371 1.01302 0.97161 1.18865 0.87473 0.75980 0.83014 1.90612 1.14502 1.51004 1.84985 1.45781 1.11982 1.69810 1.06627 1.21387 0.95513 0.93584 0.85738 0.88909 1.20980 0.97544 0.86620 0.93269 1.42322 1.77237 1.01557 1.16336 1.19209 1.34139 0.89862 0.93933 0.91249 1.24715 1.02151 0.96746 0.97117 1.69664 1.53963 1.11185 1.23110 0.86213 0.78608 0.80018 0.81474 1.21790 1.21779 1.20789 1.22155 0.96367 0.94369 0.98960 1.22369 0.96722 0.96201 0.99914 1.22458 0.98969 0.97186 0.97296 1.22282 0.96919 0.98536 0.97864 1.22572 0.97471 0.99783 0.97968 1.23211 1.03723 0.88977 1.00311 1.23165 1.01889 1.00249 0.91420 1.84849 1.21517 1.22274 1.67258 1.73872 0.89222 1.23947 1.19700 0.90000 0.90718 0.90007 0.80824 0.76275 0.94975 0.95761 0.78020 0.93560 0.90362 0.91819 0.91962 0.92086 0.92189 0.92623 0.91809 0.92735 0.88557 0.86256 0.87256 0.87721 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.48 36.01 0.38 -0.26 16 2 C 0.02 0.19 7.33 -82.10 -0.60 -0.41 16 3 C -0.22 -2.54 10.46 -39.39 -0.41 -2.95 16 4 C 0.01 0.14 6.04 -35.30 -0.21 -0.07 16 5 C -0.10 -1.27 2.53 -156.81 -0.40 -1.67 16 6 C 0.56 8.91 6.58 -10.99 -0.07 8.84 16 7 O -0.53 -9.62 13.30 5.56 0.07 -9.55 16 8 N -0.69 -11.08 3.30 -53.80 -0.18 -11.26 16 9 C 0.14 2.37 2.05 -67.93 -0.14 2.24 16 10 H 0.09 1.74 7.36 -51.93 -0.38 1.36 16 11 C 0.14 2.79 5.78 -4.04 -0.02 2.77 16 12 N -0.73 -17.79 5.43 -59.91 -0.33 -18.11 16 13 C -0.24 -6.53 9.99 -15.06 -0.15 -6.69 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 17 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.10 -1.40 2.75 -89.50 -0.25 -1.65 16 22 C -0.11 -1.54 5.42 -25.03 -0.14 -1.68 16 23 C -0.12 -1.52 6.91 -24.70 -0.17 -1.69 16 24 C -0.12 -1.56 6.83 -25.07 -0.17 -1.73 16 25 C -0.14 -1.99 6.09 -25.61 -0.16 -2.15 16 26 C -0.12 -1.41 9.74 -26.73 -0.26 -1.67 16 27 C -0.13 -1.41 9.75 -26.73 -0.26 -1.67 16 28 O 0.11 1.50 10.47 17.17 0.18 1.68 16 29 N -0.36 -5.02 12.07 33.42 0.40 -4.61 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.17 1.71 7.90 -52.48 -0.41 1.30 16 34 H 0.40 6.53 7.44 -40.82 -0.30 6.22 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.47 7.43 -51.93 -0.39 0.08 16 37 H 0.39 9.99 7.33 -40.82 -0.30 9.69 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.93 6.33 -51.93 -0.33 0.60 16 41 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.91 7.40 -51.93 -0.38 0.53 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 1.56 4.21 -51.93 -0.22 1.35 16 48 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 49 H 0.11 1.01 7.68 -51.93 -0.40 0.61 16 50 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.12 1.36 7.68 -51.93 -0.40 0.96 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -30.99 407.29 -9.27 -40.26 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -8.13 Total: 15.90 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -3.13 Total: -10.84 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.63 Total: -60.53 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.25 Total: -7.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.99 -9.27 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569609566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.759 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds