Wall clock time and date at job start Wed Apr 1 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.41372 * 126.80382 * 2 1 4 4 C 1.35450 * 103.98758 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77995 * 179.97438 * 4 3 2 6 6 C 1.50698 * 115.55233 * 240.58172 * 5 4 3 7 7 O 1.21281 * 119.99992 * 219.12559 * 6 5 4 8 8 N 1.34771 * 119.99896 * 39.39138 * 6 5 4 9 9 C 1.46508 * 120.00020 * 183.53875 * 8 6 5 10 10 H 1.08998 * 109.46477 * 330.57755 * 9 8 6 11 11 C 1.53002 * 109.46913 * 210.57851 * 9 8 6 12 12 N 1.46496 * 109.47047 * 54.99975 * 11 9 8 13 13 C 1.36940 * 119.99805 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.38807 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31621 * 119.99985 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99993 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47154 * 89.99725 * 17 15 13 19 19 H 1.48498 * 109.47001 * 210.00244 * 17 15 13 20 20 H 1.48500 * 109.46674 * 329.99766 * 17 15 13 21 21 C 1.52998 * 109.47167 * 90.57888 * 9 8 6 22 22 C 1.54265 * 110.03354 * 50.64599 * 21 9 8 23 23 C 1.54963 * 104.16323 * 217.13623 * 22 21 9 24 24 C 1.54891 * 102.77603 * 37.89126 * 23 22 21 25 25 C 1.53876 * 110.03330 * 293.43370 * 21 9 8 26 26 C 1.53011 * 117.51601 * 26.27728 * 5 4 3 27 27 C 1.52999 * 59.99818 * 107.48262 * 26 5 4 28 28 O 1.34043 * 106.44519 * 0.24268 * 4 3 2 29 29 N 1.20927 * 111.56333 * 359.56656 * 28 4 3 30 30 H 1.08997 * 109.47156 * 89.99674 * 1 2 3 31 31 H 1.09001 * 109.46977 * 209.99998 * 1 2 3 32 32 H 1.09001 * 109.46810 * 329.99104 * 1 2 3 33 33 H 1.08004 * 128.00907 * 359.97438 * 3 2 1 34 34 H 0.96999 * 120.00489 * 3.53764 * 8 6 5 35 35 H 1.09003 * 109.46476 * 174.99889 * 11 9 8 36 36 H 1.08997 * 109.46913 * 294.99667 * 11 9 8 37 37 H 0.96994 * 120.00550 * 359.97438 * 12 11 9 38 38 H 0.97003 * 119.99773 * 180.02562 * 16 15 13 39 39 H 1.08997 * 110.01971 * 172.04365 * 21 9 8 40 40 H 1.09005 * 110.48771 * 335.78591 * 22 21 9 41 41 H 1.09007 * 110.48395 * 98.43155 * 22 21 9 42 42 H 1.08999 * 110.72447 * 279.57714 * 23 22 21 43 43 H 1.09000 * 110.76697 * 156.22091 * 23 22 21 44 44 H 1.08996 * 110.48704 * 203.40512 * 24 23 22 45 45 H 1.08999 * 110.60152 * 80.81683 * 24 23 22 46 46 H 1.08998 * 110.03510 * 238.57232 * 25 21 9 47 47 H 1.09007 * 110.02989 * 359.97438 * 25 21 9 48 48 H 1.08991 * 117.49595 * 214.97262 * 26 5 4 49 49 H 1.09002 * 117.49366 * 359.97438 * 26 5 4 50 50 H 1.09002 * 117.50001 * 252.51279 * 27 26 5 51 51 H 1.09001 * 117.50210 * 107.48803 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1319 0.0000 4 6 3.6025 0.6067 0.0006 5 6 4.9023 1.3694 0.0003 6 6 5.8011 1.1216 -1.1836 7 8 7.0015 1.0453 -1.0282 8 7 5.2714 0.9901 -2.4159 9 6 6.1363 0.6723 -3.5549 10 1 7.1335 1.0750 -3.3773 11 6 5.5543 1.2936 -4.8262 12 7 5.3611 2.7314 -4.6227 13 6 4.8481 3.5028 -5.6312 14 1 4.5855 3.0510 -6.5764 15 6 4.6645 4.8651 -5.4383 16 7 4.9840 5.4155 -4.2862 17 14 3.9640 5.9172 -6.8138 18 1 2.4835 5.9542 -6.7037 19 1 4.5032 7.2966 -6.7055 20 1 4.3485 5.3370 -8.1255 21 6 6.2218 -0.8461 -3.7223 22 6 4.8051 -1.4564 -3.7399 23 6 4.9601 -2.7966 -2.9774 24 6 5.9579 -2.4353 -1.8491 25 6 6.9547 -1.4685 -2.5209 26 6 4.8961 2.7770 0.6001 27 6 5.5701 1.6278 1.3524 28 8 3.4538 -0.7254 -0.0046 29 7 2.2868 -1.0424 0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 2.0711 2.1743 -0.0004 34 1 4.3176 1.1058 -2.5488 35 1 6.2420 1.1332 -5.6566 36 1 4.5958 0.8266 -5.0528 37 1 5.5965 3.1371 -3.7737 38 1 4.8554 6.3674 -4.1512 39 1 6.7453 -1.0908 -4.6465 40 1 4.1018 -0.8031 -3.2235 41 1 4.4795 -1.6352 -4.7647 42 1 5.3757 -3.5653 -3.6290 43 1 4.0052 -3.1168 -2.5606 44 1 6.4726 -3.3283 -1.4947 45 1 5.4429 -1.9408 -1.0255 46 1 7.8334 -2.0158 -2.8622 47 1 7.2499 -0.6886 -1.8188 48 1 5.5420 3.5236 0.1384 49 1 3.9515 3.1517 0.9947 50 1 5.0691 1.2464 2.2422 51 1 6.6595 1.6184 1.3856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569609566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:21 Heat of formation + Delta-G solvation = 36.582366 kcal Electronic energy + Delta-G solvation = -32941.470068 eV Core-core repulsion = 28844.209618 eV Total energy + Delta-G solvation = -4097.260450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.92750 -41.61190 -39.51501 -37.60930 -36.89971 -35.68911 -35.16192 -33.08545 -32.31145 -31.13435 -29.58588 -29.53802 -27.86957 -26.28678 -25.00515 -24.17963 -23.21615 -22.91893 -22.53604 -21.42468 -20.42485 -20.30488 -19.32839 -18.94206 -18.56293 -17.35886 -17.26396 -17.06015 -16.61228 -16.18081 -15.88669 -15.63675 -15.19713 -15.09909 -15.02211 -14.77079 -14.31208 -14.18376 -14.15933 -13.97407 -13.85530 -13.66540 -13.35059 -13.08754 -12.96942 -12.75447 -12.58937 -12.40611 -12.22861 -12.09841 -11.97908 -11.90899 -11.87936 -11.73261 -11.65731 -11.49700 -11.47022 -11.32119 -11.04262 -10.95325 -10.91502 -10.25832 -9.88585 -8.99341 -7.92675 -5.21868 0.37005 1.24121 1.42636 1.48698 1.49703 1.57922 1.82618 2.09034 2.56544 2.81642 3.27192 3.39178 3.41136 3.51738 3.63471 3.66691 3.72659 3.80882 3.83917 4.01136 4.11896 4.17768 4.30254 4.35881 4.49467 4.54321 4.60473 4.64713 4.67135 4.68797 4.70952 4.75832 4.83547 4.85742 4.88091 4.89867 4.91805 4.93300 5.04507 5.10206 5.12568 5.15956 5.25927 5.26608 5.32921 5.49563 5.51295 5.57306 5.60617 6.27947 6.49772 7.18062 7.24983 7.35650 8.07931 8.33528 9.30104 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.004291 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.473984 B = 6523.939979 C = 7502.655630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.216 4.216 4 C 0.007 3.993 5 C -0.112 4.112 6 C 0.557 3.443 7 O -0.561 6.561 8 N -0.691 5.691 9 C 0.153 3.847 10 H 0.068 0.932 11 C 0.147 3.853 12 N -0.740 5.740 13 C -0.245 4.245 14 H 0.075 0.925 15 C -0.068 4.068 16 N -0.963 5.963 17 Si 0.970 3.030 18 H -0.286 1.286 19 H -0.298 1.298 20 H -0.273 1.273 21 C -0.092 4.092 22 C -0.112 4.112 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.115 4.115 28 O 0.089 5.911 29 N -0.386 5.386 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.192 0.808 34 H 0.401 0.599 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.101 0.899 49 H 0.135 0.865 50 H 0.129 0.871 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -13.087 11.420 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.142 4.142 3 C -0.237 4.237 4 C -0.056 4.056 5 C -0.117 4.117 6 C 0.344 3.656 7 O -0.441 6.441 8 N -0.339 5.339 9 C 0.048 3.952 10 H 0.086 0.914 11 C 0.020 3.980 12 N -0.383 5.383 13 C -0.377 4.377 14 H 0.092 0.908 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.799 3.201 18 H -0.213 1.213 19 H -0.224 1.224 20 H -0.198 1.198 21 C -0.112 4.112 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.176 4.176 26 C -0.155 4.155 27 C -0.153 4.153 28 O 0.026 5.974 29 N -0.093 5.093 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.210 0.790 34 H 0.236 0.764 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.120 0.880 49 H 0.153 0.847 50 H 0.147 0.853 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.246 -14.463 11.311 19.096 hybrid contribution -0.519 1.858 -0.724 2.061 sum -5.765 -12.605 10.587 17.442 Atomic orbital electron populations 1.20331 0.83665 1.04991 1.04323 1.24121 1.00459 0.88275 1.01350 1.22708 0.90188 1.02288 1.08474 1.22976 0.95588 0.83504 1.03582 1.19339 0.92644 1.02795 0.96895 1.19341 0.87563 0.75117 0.83590 1.90594 1.15845 1.52172 1.85458 1.45736 1.11663 1.69872 1.06668 1.21168 0.94036 0.95073 0.84894 0.91402 1.21081 0.97999 0.84244 0.94689 1.42463 1.77057 1.03378 1.15371 1.19577 1.33168 0.90405 0.94531 0.90751 1.25471 1.03281 0.98017 0.99301 1.69814 1.55573 1.11065 1.24929 0.85204 0.77866 0.77856 0.79176 1.21269 1.22435 1.19805 1.22112 0.97277 0.92280 0.99554 1.22339 0.95628 0.96536 1.00441 1.22410 0.98837 0.96849 0.96962 1.22233 0.96775 0.98563 0.97621 1.22506 0.98148 0.99484 0.97449 1.23280 1.04622 0.87939 0.99633 1.23247 1.01564 0.99320 0.91136 1.84823 1.21811 1.22808 1.67999 1.73873 0.89409 1.24952 1.21105 0.89431 0.90126 0.87840 0.79039 0.76377 0.94796 0.94799 0.79269 0.94056 0.89292 0.93124 0.91080 0.90458 0.92145 0.91308 0.93302 0.91675 0.90743 0.88033 0.84668 0.85332 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.48 71.24 0.75 -0.38 16 2 C 0.02 0.37 7.33 43.58 0.32 0.69 16 3 C -0.22 -4.71 10.46 22.40 0.23 -4.47 16 4 C 0.01 0.18 6.04 25.04 0.15 0.33 16 5 C -0.11 -2.92 2.53 -53.67 -0.14 -3.05 16 6 C 0.56 18.25 6.58 87.66 0.58 18.83 16 7 O -0.56 -21.15 13.30 -3.03 -0.04 -21.19 16 8 N -0.69 -22.65 3.30 -442.53 -1.46 -24.11 16 9 C 0.15 5.20 2.05 44.99 0.09 5.29 16 10 H 0.07 2.66 7.36 -2.39 -0.02 2.64 16 11 C 0.15 5.70 5.78 86.38 0.50 6.20 16 12 N -0.74 -36.43 5.43 -343.46 -1.87 -38.30 16 13 C -0.25 -13.29 9.99 84.03 0.84 -12.45 16 14 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 15 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 16 N -0.96 -57.12 13.06 21.65 0.28 -56.84 16 17 Si 0.97 45.06 29.55 68.60 2.03 47.08 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 C -0.09 -2.58 2.75 -10.07 -0.03 -2.60 16 22 C -0.11 -2.89 5.42 31.69 0.17 -2.72 16 23 C -0.11 -2.63 6.91 31.91 0.22 -2.41 16 24 C -0.11 -2.90 6.83 31.67 0.22 -2.69 16 25 C -0.14 -3.87 6.09 31.32 0.19 -3.68 16 26 C -0.12 -2.59 9.74 30.60 0.30 -2.29 16 27 C -0.12 -2.44 9.75 30.59 0.30 -2.14 16 28 O 0.09 2.47 10.47 71.60 0.75 3.22 16 29 N -0.39 -10.40 12.07 -49.56 -0.60 -11.00 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.19 3.35 7.90 -2.91 -0.02 3.33 16 34 H 0.40 13.28 7.44 -92.71 -0.69 12.59 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.03 1.28 7.43 -2.39 -0.02 1.26 16 37 H 0.38 19.93 7.33 -92.71 -0.68 19.25 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 1.45 6.33 -2.38 -0.02 1.43 16 41 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.39 7.40 -2.39 -0.02 1.37 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.07 2.48 4.21 -2.38 -0.01 2.47 16 48 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.14 2.24 7.68 -2.39 -0.02 2.22 16 50 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.11 2.55 7.68 -2.39 -0.02 2.53 16 Total: -1.00 -66.77 407.29 3.84 -62.93 By element: Atomic # 1 Polarization: 49.47 SS G_CDS: -0.41 Total: 49.06 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.16 Total: -10.87 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -3.64 Total: -130.24 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.71 Total: -17.97 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.77 3.84 -62.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569609566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.517 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds