Wall clock time and date at job start Wed Apr 1 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34866 * 119.09851 * 2 1 4 4 C 1.41669 * 119.33482 * 179.78387 * 3 2 1 5 5 O 1.22090 * 121.06991 * 180.21520 * 4 3 2 6 6 C 1.47098 * 117.86486 * 0.49629 * 4 3 2 7 7 C 1.47286 * 120.88430 * 179.76746 * 6 4 3 8 8 O 1.21620 * 119.99769 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00595 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00456 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.50064 * 299.93803 * 11 10 9 13 13 C 1.53035 * 109.49783 * 179.83924 * 11 10 9 14 14 C 1.53048 * 109.53948 * 178.68421 * 13 11 10 15 15 C 1.53192 * 109.30721 * 61.36716 * 14 13 11 16 16 N 1.46921 * 108.77642 * 305.36315 * 15 14 13 17 17 C 1.36939 * 120.62934 * 233.63361 * 16 15 14 18 18 H 1.07993 * 120.00168 * 27.66806 * 17 16 15 19 19 C 1.38811 * 119.99705 * 207.66051 * 17 16 15 20 20 N 1.31626 * 120.00295 * 17.37987 * 19 17 16 21 21 Si 1.86804 * 119.99980 * 197.37166 * 19 17 16 22 22 H 1.48496 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47191 * 120.00710 * 21 19 17 24 24 H 1.48504 * 109.47011 * 240.00442 * 21 19 17 25 25 C 1.46922 * 118.73804 * 53.61342 * 16 15 14 26 26 C 1.37990 * 118.23732 * 359.73844 * 6 4 3 27 27 N 1.34347 * 120.36879 * 0.02562 * 26 6 4 28 28 C 1.46506 * 118.80317 * 179.97438 * 27 26 6 29 29 H 1.09006 * 109.46999 * 269.73505 * 1 2 3 30 30 H 1.08997 * 109.47138 * 149.73444 * 1 2 3 31 31 H 1.09002 * 109.47143 * 29.73279 * 1 2 3 32 32 H 1.07998 * 120.33147 * 0.02562 * 3 2 1 33 33 H 0.97006 * 119.99402 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47420 * 300.00407 * 10 9 7 35 35 H 1.09007 * 109.46913 * 60.00571 * 10 9 7 36 36 H 1.09006 * 109.46771 * 59.99448 * 12 11 10 37 37 H 1.08999 * 109.47193 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.46750 * 300.00297 * 12 11 10 39 39 H 1.08999 * 109.46483 * 298.70942 * 13 11 10 40 40 H 1.09001 * 109.46080 * 58.66424 * 13 11 10 41 41 H 1.08995 * 109.49373 * 301.41681 * 14 13 11 42 42 H 1.08996 * 109.51956 * 181.33356 * 14 13 11 43 43 H 1.09004 * 109.58162 * 185.57981 * 15 14 13 44 44 H 1.08995 * 109.58619 * 65.15596 * 15 14 13 45 45 H 0.97000 * 119.99910 * 179.97438 * 20 19 17 46 46 H 1.09008 * 109.58729 * 186.60180 * 25 16 15 47 47 H 1.08999 * 109.58711 * 66.17847 * 25 16 15 48 48 H 1.08000 * 119.81621 * 180.02562 * 26 6 4 49 49 H 1.08995 * 109.46870 * 270.01635 * 28 27 26 50 50 H 1.09000 * 109.46800 * 30.01924 * 28 27 26 51 51 H 1.09001 * 109.46995 * 150.02027 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0047 5 8 4.2054 2.2326 0.0087 6 6 4.2725 -0.1133 -0.0019 7 6 5.7436 -0.1847 -0.0028 8 8 6.4021 0.8378 0.0016 9 7 6.3602 -1.3832 -0.0083 10 6 7.8234 -1.4543 -0.0097 11 6 8.2629 -2.9198 -0.0169 12 6 7.7210 -3.6216 1.2300 13 6 9.7914 -2.9947 -0.0224 14 6 10.2322 -4.4601 0.0035 15 6 9.7089 -5.1686 -1.2499 16 7 8.2543 -4.9773 -1.3287 17 6 7.4150 -6.0521 -1.4537 18 1 7.7092 -7.0152 -1.0636 19 6 6.1860 -5.9036 -2.0816 20 7 5.9605 -4.8574 -2.8478 21 14 4.8520 -7.1887 -1.8395 22 1 5.3525 -8.2580 -0.9387 23 1 3.6551 -6.5518 -1.2338 24 1 4.4879 -7.7778 -3.1532 25 6 7.7173 -3.6110 -1.2705 26 6 3.5077 -1.2618 -0.0067 27 7 2.1664 -1.1847 -0.0059 28 6 1.3880 -2.4258 -0.0116 29 1 -0.3633 -0.0048 1.0277 30 1 -0.3633 -0.8876 -0.5179 31 1 -0.3633 0.8924 -0.5097 32 1 1.6137 2.1083 0.0004 33 1 5.8350 -2.1988 -0.0122 34 1 8.2107 -0.9548 -0.8978 35 1 8.2119 -0.9625 0.8822 36 1 6.6322 -3.5689 1.2323 37 1 8.0340 -4.6657 1.2241 38 1 8.1104 -3.1302 2.1216 39 1 10.1753 -2.5159 -0.9232 40 1 10.1833 -2.4820 0.8561 41 1 9.8280 -4.9458 0.8916 42 1 11.3207 -4.5127 0.0235 43 1 9.9346 -6.2333 -1.1888 44 1 10.1820 -4.7429 -2.1347 45 1 5.1018 -4.7538 -3.2869 46 1 6.6289 -3.6478 -1.2230 47 1 8.0280 -3.0582 -2.1570 48 1 3.9900 -2.2281 -0.0112 49 1 1.1949 -2.7287 -1.0407 50 1 1.9490 -3.2088 0.4985 51 1 0.4410 -2.2631 0.5031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569715443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:56 Heat of formation + Delta-G solvation = -16.425769 kcal Electronic energy + Delta-G solvation = -32173.255714 eV Core-core repulsion = 28073.696660 eV Total energy + Delta-G solvation = -4099.559055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.26633 -39.39196 -38.28593 -37.48930 -34.63773 -33.70503 -33.17347 -32.62075 -31.21765 -29.93024 -28.49595 -27.03069 -26.50837 -25.53676 -25.24081 -24.13382 -22.30662 -21.71793 -20.62705 -20.22939 -18.40826 -17.73571 -17.52274 -16.73257 -16.24493 -16.15964 -15.79003 -15.23504 -15.00498 -14.61618 -14.43682 -14.09091 -13.92280 -13.80976 -13.65190 -13.57372 -13.39097 -13.24101 -13.15536 -13.04207 -12.71756 -12.58122 -12.25870 -12.20674 -12.10157 -11.97242 -11.57994 -11.35637 -11.06004 -10.92824 -10.69864 -10.44940 -10.20112 -10.14167 -9.86317 -9.74287 -9.59248 -9.56750 -9.39356 -8.99679 -8.61023 -8.54073 -7.94714 -6.73814 -5.89112 -3.30526 0.85688 1.26477 2.24703 3.17698 3.24286 3.30979 3.33833 3.56731 3.93661 4.02349 4.30712 4.36737 4.45561 4.60088 4.76579 4.93505 4.94337 5.04591 5.09890 5.13442 5.24108 5.32941 5.38852 5.45962 5.51206 5.56643 5.63173 5.71548 5.80315 5.98866 6.06144 6.13334 6.16794 6.28657 6.34425 6.41059 6.44964 6.48150 6.55071 6.61699 6.69843 6.78854 6.84835 6.93390 6.96302 7.03254 7.25957 7.53501 7.68977 7.97483 8.25773 8.33681 8.74454 9.10839 9.74750 10.33037 11.18377 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004061 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.905417 B = 6892.369806 C = 9170.915084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 C -0.273 4.273 4 C 0.409 3.591 5 O -0.484 6.484 6 C -0.297 4.297 7 C 0.571 3.429 8 O -0.522 6.522 9 N -0.723 5.723 10 C 0.139 3.861 11 C -0.103 4.103 12 C -0.124 4.124 13 C -0.096 4.096 14 C -0.135 4.135 15 C 0.143 3.857 16 N -0.590 5.590 17 C -0.243 4.243 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.901 5.901 21 Si 0.896 3.104 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.187 3.813 26 C 0.177 3.823 27 N -0.470 5.470 28 C 0.047 3.953 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.396 0.604 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.251 0.749 46 H 0.086 0.914 47 H 0.018 0.982 48 H 0.169 0.831 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 2.558 7.838 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 C -0.297 4.297 4 C 0.295 3.705 5 O -0.366 6.366 6 C -0.308 4.308 7 C 0.358 3.642 8 O -0.398 6.398 9 N -0.377 5.377 10 C 0.015 3.985 11 C -0.105 4.105 12 C -0.182 4.182 13 C -0.134 4.134 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.312 5.312 17 C -0.373 4.373 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.547 5.547 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.060 3.940 26 C 0.047 3.953 27 N -0.157 5.157 28 C -0.095 4.095 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.168 0.832 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.037 0.963 48 H 0.186 0.814 49 H 0.103 0.897 50 H 0.114 0.886 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.622 3.706 7.736 13.653 hybrid contribution -1.055 -1.307 -0.089 1.682 sum -11.677 2.399 7.646 14.162 Atomic orbital electron populations 1.21167 0.88190 1.04927 1.04127 1.20282 0.94800 0.85064 0.94886 1.22243 0.96367 0.97072 1.14010 1.18131 0.88175 0.87894 0.76270 1.90804 1.69975 1.33232 1.42543 1.22557 0.94585 0.94925 1.18687 1.17449 0.86043 0.83671 0.77082 1.90815 1.65912 1.34073 1.48976 1.45977 1.08087 1.07700 1.75888 1.21331 0.79028 0.96788 1.01335 1.21534 0.96057 0.93042 0.99865 1.21711 0.99512 1.01570 0.95374 1.21348 0.94462 0.96927 1.00651 1.22041 0.98623 0.95977 1.00737 1.20938 0.85952 0.97656 0.93801 1.44019 0.99722 1.02676 1.84746 1.19245 0.97566 0.90408 1.30075 0.91688 1.25001 0.99980 0.97742 0.97090 1.70089 1.23106 1.30169 1.31294 0.86309 0.82079 0.81435 0.77548 1.20276 1.21870 1.21793 1.20779 0.99279 0.83697 0.90202 1.22332 0.82110 1.00264 0.90617 1.42577 1.05366 1.07187 1.60542 1.22569 0.97610 0.84442 1.04835 0.89349 0.90196 0.88901 0.83185 0.76768 0.91872 0.92289 0.93987 0.91020 0.94426 0.92502 0.93310 0.91990 0.93201 0.92967 0.96491 0.93865 0.89580 0.96348 0.81411 0.89709 0.88648 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.57 8.97 36.01 0.32 -0.25 16 2 C 0.16 1.42 6.64 -82.13 -0.55 0.87 16 3 C -0.27 -3.41 9.57 -39.47 -0.38 -3.79 16 4 C 0.41 7.26 6.96 -34.68 -0.24 7.02 16 5 O -0.48 -10.85 16.41 -15.18 -0.25 -11.10 16 6 C -0.30 -4.91 6.05 -102.72 -0.62 -5.53 16 7 C 0.57 11.04 7.77 -12.58 -0.10 10.95 16 8 O -0.52 -12.33 15.57 -14.76 -0.23 -12.56 16 9 N -0.72 -12.41 4.95 -61.43 -0.30 -12.72 16 10 C 0.14 2.44 4.57 -4.04 -0.02 2.42 16 11 C -0.10 -1.80 0.53 -154.39 -0.08 -1.88 16 12 C -0.12 -2.05 7.81 37.16 0.29 -1.76 16 13 C -0.10 -1.57 4.71 -26.69 -0.13 -1.69 16 14 C -0.13 -2.22 5.74 -26.61 -0.15 -2.37 16 15 C 0.14 2.84 6.52 -3.71 -0.02 2.82 16 16 N -0.59 -13.52 2.43 -172.33 -0.42 -13.94 16 17 C -0.24 -6.09 9.59 -15.06 -0.14 -6.24 16 18 H 0.07 1.63 7.89 -52.49 -0.41 1.21 16 19 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 20 N -0.90 -23.70 11.19 55.49 0.62 -23.08 16 21 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.19 4.03 3.73 -3.71 -0.01 4.02 16 26 C 0.18 2.14 9.79 -16.54 -0.16 1.98 16 27 N -0.47 -4.31 2.97 -119.74 -0.36 -4.66 16 28 C 0.05 0.25 9.64 59.85 0.58 0.83 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.24 6.47 -51.93 -0.34 -0.09 16 31 H 0.09 0.36 8.05 -51.93 -0.42 -0.06 16 32 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.40 6.25 4.30 -40.82 -0.18 6.08 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.04 0.66 6.87 -51.93 -0.36 0.31 16 37 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 46 H 0.09 1.98 4.94 -51.92 -0.26 1.72 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.17 1.77 6.35 -52.49 -0.33 1.44 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 0.47 7.96 -51.93 -0.41 0.06 16 51 H 0.09 0.26 6.36 -51.93 -0.33 -0.07 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -35.87 395.15 -9.38 -45.26 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.87 Total: 5.16 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.50 Total: 7.31 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.46 Total: -54.40 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.48 Total: -23.66 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.87 -9.38 -45.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569715443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.833 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds