Wall clock time and date at job start Wed Apr 1 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34866 * 119.09851 * 2 1 4 4 C 1.41669 * 119.33482 * 179.78387 * 3 2 1 5 5 O 1.22090 * 121.06991 * 180.21520 * 4 3 2 6 6 C 1.47098 * 117.86486 * 0.49629 * 4 3 2 7 7 C 1.47286 * 120.88430 * 179.76746 * 6 4 3 8 8 O 1.21620 * 119.99769 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00595 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00456 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.50064 * 299.93803 * 11 10 9 13 13 C 1.53035 * 109.49783 * 179.83924 * 11 10 9 14 14 C 1.53048 * 109.53948 * 178.68421 * 13 11 10 15 15 C 1.53192 * 109.30721 * 61.36716 * 14 13 11 16 16 N 1.46921 * 108.77642 * 305.36315 * 15 14 13 17 17 C 1.36939 * 120.62934 * 233.63361 * 16 15 14 18 18 H 1.07993 * 120.00168 * 27.66806 * 17 16 15 19 19 C 1.38811 * 119.99705 * 207.66051 * 17 16 15 20 20 N 1.31626 * 120.00295 * 17.37987 * 19 17 16 21 21 Si 1.86804 * 119.99980 * 197.37166 * 19 17 16 22 22 H 1.48496 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47191 * 120.00710 * 21 19 17 24 24 H 1.48504 * 109.47011 * 240.00442 * 21 19 17 25 25 C 1.46922 * 118.73804 * 53.61342 * 16 15 14 26 26 C 1.37990 * 118.23732 * 359.73844 * 6 4 3 27 27 N 1.34347 * 120.36879 * 0.02562 * 26 6 4 28 28 C 1.46506 * 118.80317 * 179.97438 * 27 26 6 29 29 H 1.09006 * 109.46999 * 269.73505 * 1 2 3 30 30 H 1.08997 * 109.47138 * 149.73444 * 1 2 3 31 31 H 1.09002 * 109.47143 * 29.73279 * 1 2 3 32 32 H 1.07998 * 120.33147 * 0.02562 * 3 2 1 33 33 H 0.97006 * 119.99402 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47420 * 300.00407 * 10 9 7 35 35 H 1.09007 * 109.46913 * 60.00571 * 10 9 7 36 36 H 1.09006 * 109.46771 * 59.99448 * 12 11 10 37 37 H 1.08999 * 109.47193 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.46750 * 300.00297 * 12 11 10 39 39 H 1.08999 * 109.46483 * 298.70942 * 13 11 10 40 40 H 1.09001 * 109.46080 * 58.66424 * 13 11 10 41 41 H 1.08995 * 109.49373 * 301.41681 * 14 13 11 42 42 H 1.08996 * 109.51956 * 181.33356 * 14 13 11 43 43 H 1.09004 * 109.58162 * 185.57981 * 15 14 13 44 44 H 1.08995 * 109.58619 * 65.15596 * 15 14 13 45 45 H 0.97000 * 119.99910 * 179.97438 * 20 19 17 46 46 H 1.09008 * 109.58729 * 186.60180 * 25 16 15 47 47 H 1.08999 * 109.58711 * 66.17847 * 25 16 15 48 48 H 1.08000 * 119.81621 * 180.02562 * 26 6 4 49 49 H 1.08995 * 109.46870 * 270.01635 * 28 27 26 50 50 H 1.09000 * 109.46800 * 30.01924 * 28 27 26 51 51 H 1.09001 * 109.46995 * 150.02027 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0047 5 8 4.2054 2.2326 0.0087 6 6 4.2725 -0.1133 -0.0019 7 6 5.7436 -0.1847 -0.0028 8 8 6.4021 0.8378 0.0016 9 7 6.3602 -1.3832 -0.0083 10 6 7.8234 -1.4543 -0.0097 11 6 8.2629 -2.9198 -0.0169 12 6 7.7210 -3.6216 1.2300 13 6 9.7914 -2.9947 -0.0224 14 6 10.2322 -4.4601 0.0035 15 6 9.7089 -5.1686 -1.2499 16 7 8.2543 -4.9773 -1.3287 17 6 7.4150 -6.0521 -1.4537 18 1 7.7092 -7.0152 -1.0636 19 6 6.1860 -5.9036 -2.0816 20 7 5.9605 -4.8574 -2.8478 21 14 4.8520 -7.1887 -1.8395 22 1 5.3525 -8.2580 -0.9387 23 1 3.6551 -6.5518 -1.2338 24 1 4.4879 -7.7778 -3.1532 25 6 7.7173 -3.6110 -1.2705 26 6 3.5077 -1.2618 -0.0067 27 7 2.1664 -1.1847 -0.0059 28 6 1.3880 -2.4258 -0.0116 29 1 -0.3633 -0.0048 1.0277 30 1 -0.3633 -0.8876 -0.5179 31 1 -0.3633 0.8924 -0.5097 32 1 1.6137 2.1083 0.0004 33 1 5.8350 -2.1988 -0.0122 34 1 8.2107 -0.9548 -0.8978 35 1 8.2119 -0.9625 0.8822 36 1 6.6322 -3.5689 1.2323 37 1 8.0340 -4.6657 1.2241 38 1 8.1104 -3.1302 2.1216 39 1 10.1753 -2.5159 -0.9232 40 1 10.1833 -2.4820 0.8561 41 1 9.8280 -4.9458 0.8916 42 1 11.3207 -4.5127 0.0235 43 1 9.9346 -6.2333 -1.1888 44 1 10.1820 -4.7429 -2.1347 45 1 5.1018 -4.7538 -3.2869 46 1 6.6289 -3.6478 -1.2230 47 1 8.0280 -3.0582 -2.1570 48 1 3.9900 -2.2281 -0.0112 49 1 1.1949 -2.7287 -1.0407 50 1 1.9490 -3.2088 0.4985 51 1 0.4410 -2.2631 0.5031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569715443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:55 Heat of formation + Delta-G solvation = -38.877711 kcal Electronic energy + Delta-G solvation = -32174.229304 eV Core-core repulsion = 28073.696660 eV Total energy + Delta-G solvation = -4100.532644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.26543 -40.83381 -39.72628 -38.83609 -36.26289 -35.01396 -34.37144 -33.73659 -32.71626 -31.59103 -29.34992 -27.93408 -27.73876 -27.24763 -26.70140 -25.19867 -23.90858 -22.91929 -22.00232 -21.60139 -19.80290 -19.03144 -18.59113 -18.46695 -17.29454 -17.05921 -16.95084 -16.77609 -16.47280 -16.15379 -15.71281 -15.54097 -15.38485 -15.16111 -14.86404 -14.76808 -14.56058 -14.30411 -14.23802 -13.91521 -13.85388 -13.77284 -13.72922 -13.37430 -13.10680 -12.97410 -12.71803 -12.67425 -12.60157 -12.56020 -12.24939 -12.07713 -11.80984 -11.71463 -11.39955 -11.30111 -11.08528 -10.95872 -10.52822 -10.47665 -10.33651 -10.05309 -9.08075 -8.58879 -7.77940 -5.23956 -0.24457 0.28913 1.42469 1.48108 1.56304 1.65312 1.88063 2.19635 2.58431 2.76610 3.17627 3.32583 3.56455 3.59096 3.63852 3.79169 3.97055 4.03246 4.05312 4.15561 4.28602 4.33706 4.37317 4.41574 4.54075 4.56978 4.66900 4.71442 4.75072 4.76570 4.77467 4.81365 4.84426 5.00822 5.05059 5.10032 5.12779 5.18730 5.26952 5.29920 5.34707 5.41241 5.48485 5.54241 5.64855 5.66085 5.75243 5.77568 5.79252 6.46299 6.56560 7.05889 7.22224 7.29969 7.91933 8.46930 9.27972 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004061 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.905417 B = 6892.369806 C = 9170.915084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.186 3.814 3 C -0.300 4.300 4 C 0.387 3.613 5 O -0.563 6.563 6 C -0.348 4.348 7 C 0.567 3.433 8 O -0.578 6.578 9 N -0.712 5.712 10 C 0.144 3.856 11 C -0.090 4.090 12 C -0.117 4.117 13 C -0.097 4.097 14 C -0.122 4.122 15 C 0.135 3.865 16 N -0.603 5.603 17 C -0.258 4.258 18 H 0.063 0.937 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.268 1.268 24 H -0.304 1.304 25 C 0.200 3.800 26 C 0.215 3.785 27 N -0.456 5.456 28 C 0.031 3.969 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.162 0.838 33 H 0.404 0.596 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.003 0.997 45 H 0.250 0.750 46 H 0.071 0.929 47 H -0.024 1.024 48 H 0.188 0.812 49 H 0.097 0.903 50 H 0.106 0.894 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 -0.218 9.656 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 C -0.324 4.324 4 C 0.280 3.720 5 O -0.452 6.452 6 C -0.358 4.358 7 C 0.356 3.644 8 O -0.459 6.459 9 N -0.365 5.365 10 C 0.019 3.981 11 C -0.092 4.092 12 C -0.175 4.175 13 C -0.135 4.135 14 C -0.160 4.160 15 C 0.010 3.990 16 N -0.326 5.326 17 C -0.388 4.388 18 H 0.080 0.920 19 C -0.238 4.238 20 N -0.579 5.579 21 Si 0.788 3.212 22 H -0.201 1.201 23 H -0.194 1.194 24 H -0.232 1.232 25 C 0.074 3.926 26 C 0.080 3.920 27 N -0.139 5.139 28 C -0.108 4.108 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.180 0.820 33 H 0.241 0.759 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.021 0.979 45 H 0.059 0.941 46 H 0.090 0.910 47 H -0.006 1.006 48 H 0.205 0.795 49 H 0.116 0.884 50 H 0.124 0.876 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.831 0.855 9.574 16.843 hybrid contribution -0.178 -0.661 -0.743 1.011 sum -14.009 0.194 8.831 16.562 Atomic orbital electron populations 1.21404 0.83612 1.06875 1.06301 1.20959 0.97231 0.83686 0.90307 1.22153 0.93845 0.99446 1.16909 1.18871 0.90400 0.87437 0.75296 1.90749 1.71676 1.35223 1.47527 1.22281 0.93380 0.96320 1.23865 1.17950 0.87394 0.83187 0.75886 1.90767 1.67362 1.35860 1.51880 1.45867 1.07950 1.07511 1.75185 1.21258 0.79391 0.96728 1.00685 1.21350 0.97070 0.92271 0.98510 1.21635 0.99833 1.00753 0.95232 1.21388 0.93332 0.97311 1.01489 1.21910 1.00213 0.95175 0.98732 1.21099 0.84523 0.98231 0.95156 1.44239 1.00858 1.02581 1.84899 1.19497 0.98316 0.90915 1.30054 0.91970 1.25684 1.01739 0.99661 0.96745 1.70251 1.23463 1.31969 1.32190 0.85348 0.80080 0.79121 0.76685 1.20053 1.19376 1.23189 1.20525 0.98383 0.83231 0.90467 1.22453 0.83404 0.99312 0.86847 1.43144 1.04667 1.09175 1.56908 1.23081 0.98774 0.82422 1.06498 0.86685 0.87444 0.87834 0.82007 0.75863 0.94077 0.91456 0.93595 0.92091 0.92178 0.93460 0.90607 0.91386 0.90410 0.92847 0.97853 0.94058 0.91044 1.00610 0.79525 0.88445 0.87565 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.44 8.97 71.24 0.64 0.20 16 2 C 0.19 2.79 6.64 41.21 0.27 3.06 16 3 C -0.30 -7.48 9.57 22.34 0.21 -7.27 16 4 C 0.39 14.75 6.96 25.44 0.18 14.93 16 5 O -0.56 -27.96 16.41 13.53 0.22 -27.74 16 6 C -0.35 -12.03 6.05 -18.63 -0.11 -12.14 16 7 C 0.57 23.42 7.77 86.62 0.67 24.09 16 8 O -0.58 -29.79 15.57 15.04 0.23 -29.55 16 9 N -0.71 -25.33 4.95 -466.51 -2.31 -27.64 16 10 C 0.14 5.21 4.57 86.38 0.39 5.60 16 11 C -0.09 -3.14 0.53 -52.10 -0.03 -3.17 16 12 C -0.12 -3.65 7.81 71.98 0.56 -3.09 16 13 C -0.10 -3.08 4.71 30.62 0.14 -2.94 16 14 C -0.12 -3.79 5.74 30.67 0.18 -3.61 16 15 C 0.14 5.38 6.52 86.36 0.56 5.94 16 16 N -0.60 -27.92 2.43 -699.12 -1.70 -29.62 16 17 C -0.26 -12.88 9.59 84.03 0.81 -12.08 16 18 H 0.06 3.09 7.89 -2.91 -0.02 3.06 16 19 C -0.04 -2.13 4.91 84.86 0.42 -1.71 16 20 N -0.93 -49.38 11.19 21.65 0.24 -49.14 16 21 Si 0.96 38.72 29.59 68.60 2.03 40.75 16 22 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 25 C 0.20 8.87 3.73 86.36 0.32 9.19 16 26 C 0.21 4.87 9.79 84.25 0.83 5.69 16 27 N -0.46 -6.71 2.97 -532.75 -1.58 -8.29 16 28 C 0.03 0.15 9.64 127.77 1.23 1.38 16 29 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 30 H 0.11 -0.10 6.47 -2.39 -0.02 -0.12 16 31 H 0.10 0.30 8.05 -2.39 -0.02 0.28 16 32 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.40 12.80 4.30 -92.70 -0.40 12.40 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.04 1.37 6.87 -2.38 -0.02 1.35 16 37 H 0.06 2.06 5.97 -2.39 -0.01 2.05 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.08 6.34 -2.39 -0.02 2.06 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.05 2.06 7.93 -2.38 -0.02 2.05 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.25 12.68 8.31 -92.71 -0.77 11.91 16 46 H 0.07 3.35 4.94 -2.38 -0.01 3.34 16 47 H -0.02 -1.26 8.14 -2.39 -0.02 -1.27 16 48 H 0.19 3.52 6.35 -2.91 -0.02 3.50 16 49 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.11 0.43 7.96 -2.39 -0.02 0.42 16 51 H 0.13 -0.25 6.36 -2.39 -0.02 -0.26 16 Total: -1.00 -87.68 395.15 4.96 -82.72 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.55 Total: 24.44 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 7.28 Total: 24.07 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.35 Total: -114.69 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: 0.46 Total: -57.29 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -87.68 4.96 -82.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569715443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.846 kcal (2) G-P(sol) polarization free energy of solvation -87.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds