Wall clock time and date at job start Wed Apr 1 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34870 * 119.09974 * 2 1 4 4 C 1.41672 * 119.33844 * 179.97438 * 3 2 1 5 5 O 1.22082 * 121.06551 * 180.02562 * 4 3 2 6 6 C 1.47099 * 117.86125 * 359.97438 * 4 3 2 7 7 C 1.47283 * 120.88134 * 179.97438 * 6 4 3 8 8 O 1.21629 * 119.99944 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00241 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00277 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.49900 * 60.06483 * 11 10 9 13 13 C 1.53040 * 109.52397 * 180.14575 * 11 10 9 14 14 C 1.53042 * 109.53706 * 181.32842 * 13 11 10 15 15 C 1.53620 * 109.24610 * 298.51520 * 14 13 11 16 16 N 1.46928 * 108.54409 * 54.85270 * 15 14 13 17 17 C 1.36932 * 120.62935 * 126.37114 * 16 15 14 18 18 H 1.08003 * 120.00002 * 202.63020 * 17 16 15 19 19 C 1.38812 * 119.99818 * 22.62818 * 17 16 15 20 20 N 1.31618 * 120.00440 * 34.92294 * 19 17 16 21 21 Si 1.86805 * 119.99875 * 214.91894 * 19 17 16 22 22 H 1.48496 * 109.47450 * 180.02562 * 21 19 17 23 23 H 1.48508 * 109.46825 * 59.99873 * 21 19 17 24 24 H 1.48498 * 109.46901 * 300.00490 * 21 19 17 25 25 C 1.46927 * 118.73730 * 306.09578 * 16 15 14 26 26 C 1.37993 * 118.23637 * 0.25596 * 6 4 3 27 27 N 1.34340 * 120.37078 * 359.50503 * 26 6 4 28 28 C 1.46503 * 118.80349 * 180.24440 * 27 26 6 29 29 H 1.08995 * 109.46657 * 95.03413 * 1 2 3 30 30 H 1.08995 * 109.47186 * 215.03585 * 1 2 3 31 31 H 1.09000 * 109.47060 * 335.03831 * 1 2 3 32 32 H 1.08000 * 120.33090 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00183 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47269 * 59.99798 * 10 9 7 35 35 H 1.09001 * 109.46954 * 300.00247 * 10 9 7 36 36 H 1.08998 * 109.47321 * 299.94061 * 12 11 10 37 37 H 1.08999 * 109.46887 * 59.93616 * 12 11 10 38 38 H 1.08994 * 109.47216 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.46041 * 301.35443 * 13 11 10 40 40 H 1.09009 * 109.45948 * 61.32703 * 13 11 10 41 41 H 1.09002 * 109.49270 * 58.59015 * 14 13 11 42 42 H 1.09001 * 109.49738 * 178.68214 * 14 13 11 43 43 H 1.09006 * 109.73747 * 295.11786 * 15 14 13 44 44 H 1.09001 * 109.66425 * 174.55254 * 15 14 13 45 45 H 0.97002 * 119.99675 * 0.37013 * 20 19 17 46 46 H 1.09000 * 109.58183 * 173.64370 * 25 16 15 47 47 H 1.08998 * 109.58539 * 293.92771 * 25 16 15 48 48 H 1.07999 * 119.81272 * 179.72759 * 26 6 4 49 49 H 1.09001 * 109.47165 * 266.72583 * 28 27 26 50 50 H 1.08998 * 109.47225 * 26.73066 * 28 27 26 51 51 H 1.09002 * 109.46967 * 146.72495 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1630 1.1785 0.0000 4 6 3.5797 1.1844 0.0006 5 8 4.2053 2.2327 0.0010 6 6 4.2725 -0.1132 0.0017 7 6 5.7436 -0.1847 0.0017 8 8 6.4021 0.8379 0.0004 9 7 6.3601 -1.3832 0.0023 10 6 7.8234 -1.4543 0.0018 11 6 8.2628 -2.9198 0.0019 12 6 7.7197 -3.6159 -1.2476 13 6 9.7913 -2.9954 0.0050 14 6 10.2313 -4.4609 -0.0283 15 6 9.7096 -5.1749 1.2279 16 7 8.2548 -4.9836 1.3039 17 6 7.4153 -6.0585 1.4257 18 1 6.3823 -5.9741 1.1217 19 6 7.8918 -7.2565 1.9399 20 7 8.8034 -7.2491 2.8893 21 14 7.2392 -8.8795 1.2845 22 1 7.9031 -10.0027 1.9936 23 1 7.5221 -8.9755 -0.1702 24 1 5.7730 -8.9504 1.5092 25 6 7.7185 -3.6167 1.2528 26 6 3.5076 -1.2618 -0.0033 27 7 2.1664 -1.1846 0.0010 28 6 1.3880 -2.4258 0.0010 29 1 -0.3632 -0.0902 -1.0237 30 1 -0.3633 -0.8414 0.5899 31 1 -0.3633 0.9317 0.4337 32 1 1.6137 2.1084 0.0004 33 1 5.8350 -2.1987 0.0022 34 1 8.2116 -0.9581 0.8913 35 1 8.2108 -0.9592 -0.8887 36 1 6.6309 -3.5643 -1.2480 37 1 8.1072 -3.1197 -2.1374 38 1 8.0333 -4.6598 -1.2473 39 1 10.1823 -2.4788 -0.8715 40 1 10.1765 -2.5213 0.9079 41 1 9.8258 -4.9422 -0.9182 42 1 11.3198 -4.5135 -0.0497 43 1 10.1808 -4.7509 2.1147 44 1 9.9355 -6.2394 1.1652 45 1 9.1383 -6.4063 3.2334 46 1 6.6301 -3.6528 1.2065 47 1 8.0284 -3.0691 2.1429 48 1 3.9899 -2.2281 -0.0070 49 1 1.1421 -2.7004 -1.0248 50 1 1.9740 -3.2221 0.4598 51 1 0.4689 -2.2781 0.5680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569715444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:59 Heat of formation + Delta-G solvation = -15.754239 kcal Electronic energy + Delta-G solvation = -31597.755031 eV Core-core repulsion = 27498.225096 eV Total energy + Delta-G solvation = -4099.529935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.46093 -39.62455 -38.48179 -37.68288 -34.99306 -33.91753 -33.30828 -32.70228 -30.86025 -30.44624 -28.66159 -27.21458 -26.67011 -25.49801 -25.13436 -24.33927 -22.38632 -21.83754 -20.76432 -20.45822 -18.57810 -17.88139 -17.67888 -17.33425 -16.44982 -16.38053 -15.99461 -15.38487 -15.12229 -14.66606 -14.46483 -14.27652 -14.04388 -13.91221 -13.85226 -13.70001 -13.58304 -13.44160 -13.42807 -13.24939 -12.87185 -12.74041 -12.35311 -12.29095 -12.15507 -12.14586 -11.85094 -11.42077 -11.04362 -10.83857 -10.64873 -10.41616 -10.17095 -10.11742 -9.98859 -9.91525 -9.77593 -9.75914 -9.37061 -9.18992 -8.83070 -8.27971 -8.13730 -6.93162 -6.25492 -3.18456 0.65266 1.08445 2.05134 3.03921 3.30855 3.40719 3.47126 3.64373 3.75255 3.82062 4.11635 4.22069 4.41655 4.51504 4.53587 4.74359 4.81865 4.86939 4.93491 4.96249 5.13786 5.16291 5.23503 5.26470 5.30700 5.44489 5.48816 5.53146 5.72898 5.79547 5.91189 5.97115 6.03449 6.11043 6.15587 6.25283 6.29047 6.35920 6.43834 6.46441 6.50943 6.58646 6.66062 6.71215 6.75767 6.84137 7.07304 7.17386 7.70285 7.91956 8.08172 8.49478 8.50418 9.04394 9.80540 10.27177 11.10640 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.003074 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.652804 B = 9105.305198 C =11021.007656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 C -0.271 4.271 4 C 0.408 3.592 5 O -0.482 6.482 6 C -0.298 4.298 7 C 0.570 3.430 8 O -0.517 6.517 9 N -0.727 5.727 10 C 0.136 3.864 11 C -0.092 4.092 12 C -0.128 4.128 13 C -0.095 4.095 14 C -0.137 4.137 15 C 0.149 3.851 16 N -0.594 5.594 17 C -0.361 4.361 18 H 0.056 0.944 19 C -0.020 4.020 20 N -0.902 5.902 21 Si 1.057 2.943 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.164 3.836 26 C 0.175 3.825 27 N -0.470 5.470 28 C 0.045 3.955 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.393 0.607 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.015 0.985 44 H 0.077 0.923 45 H 0.270 0.730 46 H 0.048 0.952 47 H 0.016 0.984 48 H 0.167 0.833 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.969 7.721 -7.983 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 C -0.295 4.295 4 C 0.294 3.706 5 O -0.363 6.363 6 C -0.309 4.309 7 C 0.357 3.643 8 O -0.392 6.392 9 N -0.382 5.382 10 C 0.012 3.988 11 C -0.094 4.094 12 C -0.185 4.185 13 C -0.134 4.134 14 C -0.177 4.177 15 C 0.023 3.977 16 N -0.317 5.317 17 C -0.490 4.490 18 H 0.074 0.926 19 C -0.224 4.224 20 N -0.540 5.540 21 Si 0.887 3.113 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.221 1.221 25 C 0.037 3.963 26 C 0.044 3.956 27 N -0.157 5.157 28 C -0.096 4.096 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.169 0.831 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.033 0.967 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.185 0.815 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.179 7.184 -7.811 19.349 hybrid contribution -0.468 1.065 -0.121 1.170 sum -16.647 8.249 -7.932 20.201 Atomic orbital electron populations 1.21198 0.88057 1.05058 1.04144 1.20285 0.94880 0.85006 0.94914 1.22273 0.96321 0.97161 1.13706 1.18140 0.88220 0.87873 0.76357 1.90817 1.69956 1.33214 1.42299 1.22563 0.94458 0.95080 1.18749 1.17477 0.86099 0.83628 0.77112 1.90839 1.65892 1.34001 1.48484 1.46002 1.08102 1.07622 1.76425 1.21396 0.78867 0.96736 1.01787 1.21320 0.96668 0.92685 0.98716 1.21745 0.99222 1.02155 0.95376 1.21357 0.93699 0.97502 1.00801 1.22167 0.98865 0.95370 1.01259 1.21027 0.83987 0.99840 0.92827 1.44089 1.01590 1.00675 1.85351 1.19797 0.94892 0.91357 1.42929 0.92649 1.25685 1.00423 1.01443 0.94807 1.70817 1.33329 1.30238 1.19662 0.83622 0.75236 0.76391 0.76046 1.21217 1.22112 1.22139 1.20824 0.96228 0.86583 0.92629 1.22279 0.82202 1.00053 0.91034 1.42573 1.05301 1.07306 1.60507 1.22613 0.97993 0.84386 1.04630 0.89304 0.90018 0.88885 0.83079 0.77104 0.91705 0.91855 0.94111 0.93973 0.90476 0.93033 0.92507 0.91859 0.93102 0.96716 0.90467 0.91956 0.93366 0.96617 0.81550 0.89822 0.88450 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.36 9.36 36.01 0.34 -0.02 16 2 C 0.15 1.10 6.64 -82.13 -0.55 0.55 16 3 C -0.27 -2.90 9.57 -39.47 -0.38 -3.28 16 4 C 0.41 6.47 6.96 -34.68 -0.24 6.23 16 5 O -0.48 -10.02 16.41 -15.17 -0.25 -10.27 16 6 C -0.30 -4.20 6.05 -102.72 -0.62 -4.82 16 7 C 0.57 9.69 7.77 -12.58 -0.10 9.59 16 8 O -0.52 -11.25 15.57 -14.76 -0.23 -11.48 16 9 N -0.73 -10.52 4.95 -61.43 -0.30 -10.82 16 10 C 0.14 2.11 4.57 -4.04 -0.02 2.09 16 11 C -0.09 -1.47 0.53 -154.39 -0.08 -1.55 16 12 C -0.13 -1.96 7.81 37.16 0.29 -1.67 16 13 C -0.10 -1.54 4.71 -26.69 -0.13 -1.67 16 14 C -0.14 -2.46 5.75 -26.39 -0.15 -2.61 16 15 C 0.15 3.31 4.87 -3.49 -0.02 3.29 16 16 N -0.59 -13.63 2.33 -172.05 -0.40 -14.03 16 17 C -0.36 -9.28 9.44 -15.06 -0.14 -9.42 16 18 H 0.06 1.41 7.99 -52.48 -0.42 0.99 16 19 C -0.02 -0.54 4.42 -17.43 -0.08 -0.61 16 20 N -0.90 -25.88 12.55 55.49 0.70 -25.19 16 21 Si 1.06 23.74 30.04 -169.99 -5.11 18.63 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.16 3.16 4.93 -3.71 -0.02 3.14 16 26 C 0.18 1.60 9.79 -16.54 -0.16 1.44 16 27 N -0.47 -3.11 2.97 -119.74 -0.36 -3.46 16 28 C 0.04 0.11 10.03 59.85 0.60 0.71 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.09 5.93 -51.93 -0.31 -0.22 16 31 H 0.09 0.22 7.99 -51.93 -0.41 -0.20 16 32 H 0.15 1.38 8.02 -52.49 -0.42 0.96 16 33 H 0.39 4.81 4.30 -40.82 -0.18 4.63 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.56 6.87 -51.93 -0.36 0.20 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.38 5.97 -51.93 -0.31 1.07 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.06 1.15 6.33 -51.93 -0.33 0.82 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.01 0.34 8.04 -51.93 -0.42 -0.08 16 44 H 0.08 1.93 6.24 -51.93 -0.32 1.60 16 45 H 0.27 7.87 7.16 -40.82 -0.29 7.58 16 46 H 0.05 0.89 6.81 -51.93 -0.35 0.53 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.17 1.11 6.31 -52.49 -0.33 0.78 16 49 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 50 H 0.10 0.20 7.90 -51.93 -0.41 -0.21 16 51 H 0.10 0.07 5.81 -51.93 -0.30 -0.23 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -37.97 394.28 -9.22 -47.19 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.76 Total: 2.08 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.45 Total: 1.41 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.36 Total: -53.51 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.48 Total: -21.74 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.11 Total: 18.63 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.97 -9.22 -47.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569715444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.434 kcal (2) G-P(sol) polarization free energy of solvation -37.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds