Wall clock time and date at job start Wed Apr 1 2020 04:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34870 * 119.09974 * 2 1 4 4 C 1.41672 * 119.33844 * 179.97438 * 3 2 1 5 5 O 1.22082 * 121.06551 * 180.02562 * 4 3 2 6 6 C 1.47099 * 117.86125 * 359.97438 * 4 3 2 7 7 C 1.47283 * 120.88134 * 179.97438 * 6 4 3 8 8 O 1.21629 * 119.99944 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00241 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00277 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.49900 * 60.06483 * 11 10 9 13 13 C 1.53040 * 109.52397 * 180.14575 * 11 10 9 14 14 C 1.53042 * 109.53706 * 181.32842 * 13 11 10 15 15 C 1.53620 * 109.24610 * 298.51520 * 14 13 11 16 16 N 1.46928 * 108.54409 * 54.85270 * 15 14 13 17 17 C 1.36932 * 120.62935 * 126.37114 * 16 15 14 18 18 H 1.08003 * 120.00002 * 202.63020 * 17 16 15 19 19 C 1.38812 * 119.99818 * 22.62818 * 17 16 15 20 20 N 1.31618 * 120.00440 * 34.92294 * 19 17 16 21 21 Si 1.86805 * 119.99875 * 214.91894 * 19 17 16 22 22 H 1.48496 * 109.47450 * 180.02562 * 21 19 17 23 23 H 1.48508 * 109.46825 * 59.99873 * 21 19 17 24 24 H 1.48498 * 109.46901 * 300.00490 * 21 19 17 25 25 C 1.46927 * 118.73730 * 306.09578 * 16 15 14 26 26 C 1.37993 * 118.23637 * 0.25596 * 6 4 3 27 27 N 1.34340 * 120.37078 * 359.50503 * 26 6 4 28 28 C 1.46503 * 118.80349 * 180.24440 * 27 26 6 29 29 H 1.08995 * 109.46657 * 95.03413 * 1 2 3 30 30 H 1.08995 * 109.47186 * 215.03585 * 1 2 3 31 31 H 1.09000 * 109.47060 * 335.03831 * 1 2 3 32 32 H 1.08000 * 120.33090 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00183 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47269 * 59.99798 * 10 9 7 35 35 H 1.09001 * 109.46954 * 300.00247 * 10 9 7 36 36 H 1.08998 * 109.47321 * 299.94061 * 12 11 10 37 37 H 1.08999 * 109.46887 * 59.93616 * 12 11 10 38 38 H 1.08994 * 109.47216 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.46041 * 301.35443 * 13 11 10 40 40 H 1.09009 * 109.45948 * 61.32703 * 13 11 10 41 41 H 1.09002 * 109.49270 * 58.59015 * 14 13 11 42 42 H 1.09001 * 109.49738 * 178.68214 * 14 13 11 43 43 H 1.09006 * 109.73747 * 295.11786 * 15 14 13 44 44 H 1.09001 * 109.66425 * 174.55254 * 15 14 13 45 45 H 0.97002 * 119.99675 * 0.37013 * 20 19 17 46 46 H 1.09000 * 109.58183 * 173.64370 * 25 16 15 47 47 H 1.08998 * 109.58539 * 293.92771 * 25 16 15 48 48 H 1.07999 * 119.81272 * 179.72759 * 26 6 4 49 49 H 1.09001 * 109.47165 * 266.72583 * 28 27 26 50 50 H 1.08998 * 109.47225 * 26.73066 * 28 27 26 51 51 H 1.09002 * 109.46967 * 146.72495 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1630 1.1785 0.0000 4 6 3.5797 1.1844 0.0006 5 8 4.2053 2.2327 0.0010 6 6 4.2725 -0.1132 0.0017 7 6 5.7436 -0.1847 0.0017 8 8 6.4021 0.8379 0.0004 9 7 6.3601 -1.3832 0.0023 10 6 7.8234 -1.4543 0.0018 11 6 8.2628 -2.9198 0.0019 12 6 7.7197 -3.6159 -1.2476 13 6 9.7913 -2.9954 0.0050 14 6 10.2313 -4.4609 -0.0283 15 6 9.7096 -5.1749 1.2279 16 7 8.2548 -4.9836 1.3039 17 6 7.4153 -6.0585 1.4257 18 1 6.3823 -5.9741 1.1217 19 6 7.8918 -7.2565 1.9399 20 7 8.8034 -7.2491 2.8893 21 14 7.2392 -8.8795 1.2845 22 1 7.9031 -10.0027 1.9936 23 1 7.5221 -8.9755 -0.1702 24 1 5.7730 -8.9504 1.5092 25 6 7.7185 -3.6167 1.2528 26 6 3.5076 -1.2618 -0.0033 27 7 2.1664 -1.1846 0.0010 28 6 1.3880 -2.4258 0.0010 29 1 -0.3632 -0.0902 -1.0237 30 1 -0.3633 -0.8414 0.5899 31 1 -0.3633 0.9317 0.4337 32 1 1.6137 2.1084 0.0004 33 1 5.8350 -2.1987 0.0022 34 1 8.2116 -0.9581 0.8913 35 1 8.2108 -0.9592 -0.8887 36 1 6.6309 -3.5643 -1.2480 37 1 8.1072 -3.1197 -2.1374 38 1 8.0333 -4.6598 -1.2473 39 1 10.1823 -2.4788 -0.8715 40 1 10.1765 -2.5213 0.9079 41 1 9.8258 -4.9422 -0.9182 42 1 11.3198 -4.5135 -0.0497 43 1 10.1808 -4.7509 2.1147 44 1 9.9355 -6.2394 1.1652 45 1 9.1383 -6.4063 3.2334 46 1 6.6301 -3.6528 1.2065 47 1 8.0284 -3.0691 2.1429 48 1 3.9899 -2.2281 -0.0070 49 1 1.1421 -2.7004 -1.0248 50 1 1.9740 -3.2221 0.4598 51 1 0.4689 -2.2781 0.5680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569715444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:58 Heat of formation + Delta-G solvation = -40.571309 kcal Electronic energy + Delta-G solvation = -31598.831180 eV Core-core repulsion = 27498.225096 eV Total energy + Delta-G solvation = -4100.606084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.26996 -40.92531 -39.82188 -38.86326 -36.59818 -35.08634 -34.31260 -33.66179 -32.29121 -32.23618 -29.35985 -27.96149 -27.71015 -26.99057 -26.79237 -25.21038 -23.93842 -22.96741 -22.15009 -21.65382 -19.84942 -19.12979 -19.03656 -18.58155 -17.29501 -17.03523 -16.95768 -16.64365 -16.40603 -16.15481 -15.85913 -15.58789 -15.46367 -15.33023 -15.17740 -14.81446 -14.67526 -14.32155 -14.27434 -13.89237 -13.86267 -13.80822 -13.70522 -13.41899 -13.33785 -12.94496 -12.68838 -12.56524 -12.51851 -12.48570 -12.21323 -11.90926 -11.89774 -11.74933 -11.56944 -11.38990 -11.16331 -11.03613 -10.53544 -10.34900 -10.25839 -10.10482 -9.08014 -8.85100 -8.31005 -5.21252 -0.24755 0.29899 1.43519 1.62264 1.70715 1.86606 1.88450 2.12811 2.69825 2.76144 3.17935 3.22865 3.48939 3.56883 3.60682 3.76180 3.85179 3.86892 3.89620 4.15579 4.20838 4.28357 4.39548 4.40744 4.43612 4.46172 4.62912 4.69268 4.69904 4.70964 4.73487 4.80941 4.83000 4.84850 4.88289 5.02137 5.06398 5.12486 5.14455 5.21833 5.27766 5.30504 5.31417 5.40884 5.44761 5.64977 5.66877 5.77836 5.92327 6.41465 6.53864 7.06329 7.08699 7.28272 7.86452 8.33398 9.03343 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.003074 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.652804 B = 9105.305198 C =11021.007656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.186 3.814 3 C -0.303 4.303 4 C 0.384 3.616 5 O -0.566 6.566 6 C -0.351 4.351 7 C 0.568 3.432 8 O -0.579 6.579 9 N -0.713 5.713 10 C 0.144 3.856 11 C -0.076 4.076 12 C -0.122 4.122 13 C -0.096 4.096 14 C -0.125 4.125 15 C 0.152 3.848 16 N -0.606 5.606 17 C -0.355 4.355 18 H 0.063 0.937 19 C -0.075 4.075 20 N -0.937 5.937 21 Si 1.108 2.892 22 H -0.302 1.302 23 H -0.281 1.281 24 H -0.271 1.271 25 C 0.163 3.837 26 C 0.218 3.782 27 N -0.455 5.455 28 C 0.029 3.971 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.406 0.594 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.068 0.932 43 H -0.005 1.005 44 H 0.044 0.956 45 H 0.251 0.749 46 H 0.060 0.940 47 H -0.003 1.003 48 H 0.200 0.800 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.953 5.395 -9.941 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 C -0.326 4.326 4 C 0.277 3.723 5 O -0.455 6.455 6 C -0.361 4.361 7 C 0.358 3.642 8 O -0.459 6.459 9 N -0.367 5.367 10 C 0.020 3.980 11 C -0.078 4.078 12 C -0.179 4.179 13 C -0.134 4.134 14 C -0.164 4.164 15 C 0.026 3.974 16 N -0.330 5.330 17 C -0.484 4.484 18 H 0.081 0.919 19 C -0.272 4.272 20 N -0.579 5.579 21 Si 0.933 3.067 22 H -0.229 1.229 23 H -0.207 1.207 24 H -0.196 1.196 25 C 0.038 3.962 26 C 0.083 3.917 27 N -0.138 5.138 28 C -0.109 4.109 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.175 0.825 33 H 0.244 0.756 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.013 0.987 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.015 0.985 48 H 0.217 0.783 49 H 0.127 0.873 50 H 0.128 0.872 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.253 4.805 -9.790 23.003 hybrid contribution 0.578 1.654 0.527 1.829 sum -19.676 6.459 -9.264 22.686 Atomic orbital electron populations 1.21418 0.83840 1.06838 1.06159 1.20885 0.97125 0.83831 0.90291 1.22158 0.93998 0.99435 1.16974 1.18918 0.90365 0.87685 0.75314 1.90760 1.71696 1.35451 1.47593 1.22216 0.93266 0.96307 1.24360 1.17945 0.87364 0.83143 0.75788 1.90797 1.67411 1.36059 1.51599 1.45809 1.07669 1.07551 1.75689 1.21231 0.79578 0.95988 1.01245 1.21118 0.96636 0.92464 0.97602 1.21682 1.00428 1.00600 0.95239 1.21378 0.93773 0.96390 1.01827 1.22015 0.99848 0.95841 0.98662 1.20909 0.83977 0.98247 0.94225 1.44295 1.01692 1.01630 1.85347 1.20125 0.95490 0.91950 1.40830 0.91899 1.26976 1.00710 1.04869 0.94679 1.70956 1.35790 1.28976 1.22163 0.82936 0.75825 0.72194 0.75703 1.22926 1.20704 1.19612 1.20935 0.96941 0.84860 0.93500 1.22567 0.83186 0.99449 0.86529 1.43179 1.04864 1.09124 1.56612 1.23148 0.98600 0.82136 1.07017 0.86975 0.87047 0.88194 0.82488 0.75590 0.93371 0.91492 0.92347 0.92144 0.92656 0.90313 0.93123 0.91553 0.91344 0.98747 0.93719 0.93966 0.92201 0.98525 0.78302 0.87339 0.87202 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 9.36 71.24 0.67 0.65 16 2 C 0.19 1.99 6.64 41.21 0.27 2.26 16 3 C -0.30 -6.45 9.57 22.34 0.21 -6.24 16 4 C 0.38 13.06 6.96 25.45 0.18 13.24 16 5 O -0.57 -26.27 16.41 13.55 0.22 -26.05 16 6 C -0.35 -10.04 6.05 -18.63 -0.11 -10.15 16 7 C 0.57 20.02 7.77 86.62 0.67 20.69 16 8 O -0.58 -27.12 15.57 15.02 0.23 -26.88 16 9 N -0.71 -20.07 4.95 -466.51 -2.31 -22.38 16 10 C 0.14 4.39 4.57 86.38 0.39 4.79 16 11 C -0.08 -2.33 0.53 -52.10 -0.03 -2.36 16 12 C -0.12 -3.38 7.81 71.98 0.56 -2.82 16 13 C -0.10 -2.95 4.71 30.62 0.14 -2.81 16 14 C -0.12 -4.34 5.75 30.82 0.18 -4.16 16 15 C 0.15 6.89 4.87 86.51 0.42 7.31 16 16 N -0.61 -27.74 2.33 -698.25 -1.63 -29.37 16 17 C -0.35 -17.92 9.44 84.03 0.79 -17.12 16 18 H 0.06 3.04 7.99 -2.91 -0.02 3.02 16 19 C -0.08 -4.01 4.42 84.86 0.38 -3.64 16 20 N -0.94 -55.22 12.55 21.65 0.27 -54.95 16 21 Si 1.11 47.19 30.04 68.60 2.06 49.25 16 22 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 25 C 0.16 6.18 4.93 86.36 0.43 6.60 16 26 C 0.22 3.31 9.79 84.25 0.83 4.14 16 27 N -0.45 -3.91 2.97 -532.76 -1.58 -5.49 16 28 C 0.03 -0.05 10.03 127.77 1.28 1.23 16 29 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.11 -0.55 5.93 -2.39 -0.01 -0.56 16 31 H 0.10 0.02 7.99 -2.39 -0.02 0.00 16 32 H 0.16 2.97 8.02 -2.91 -0.02 2.95 16 33 H 0.41 8.89 4.30 -92.71 -0.40 8.49 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.39 6.87 -2.39 -0.02 1.37 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.82 5.97 -2.39 -0.01 1.80 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.07 2.29 6.33 -2.39 -0.02 2.28 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H -0.01 -0.26 8.04 -2.38 -0.02 -0.28 16 44 H 0.04 2.30 6.24 -2.39 -0.01 2.28 16 45 H 0.25 15.29 7.16 -92.71 -0.66 14.63 16 46 H 0.06 2.08 6.81 -2.39 -0.02 2.06 16 47 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.20 1.69 6.31 -2.91 -0.02 1.67 16 49 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.11 -0.30 7.90 -2.39 -0.02 -0.32 16 51 H 0.12 -0.77 5.81 -2.39 -0.01 -0.79 16 Total: -1.00 -94.11 394.28 5.19 -88.91 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.66 Total: 15.35 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 7.26 Total: 11.60 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -5.24 Total: -112.19 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: 0.46 Total: -52.93 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.06 Total: 49.25 kcal Total: -94.11 5.19 -88.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569715444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.342 kcal (2) G-P(sol) polarization free energy of solvation -94.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds