Wall clock time and date at job start Wed Apr 1 2020 04:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41386 * 126.80360 * 2 1 4 4 C 1.35451 * 103.98488 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.77444 * 179.97438 * 4 3 2 6 6 C 1.50694 * 115.55172 * 330.73096 * 5 4 3 7 7 O 1.21282 * 119.99764 * 235.45197 * 6 5 4 8 8 N 1.34773 * 120.00052 * 55.44870 * 6 5 4 9 9 C 1.46503 * 119.99954 * 183.83902 * 8 6 5 10 10 C 1.53000 * 109.46917 * 58.72974 * 9 8 6 11 11 N 1.46502 * 109.46909 * 58.51612 * 10 9 8 12 12 C 1.36947 * 119.99786 * 174.68262 * 11 10 9 13 13 H 1.07996 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.38806 * 119.99695 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00337 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99911 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47310 * 89.99317 * 16 14 12 18 18 H 1.48504 * 109.47038 * 209.99940 * 16 14 12 19 19 H 1.48502 * 109.46773 * 329.99310 * 16 14 12 20 20 C 1.52996 * 109.47328 * 298.73398 * 9 8 6 21 21 C 1.53002 * 109.46817 * 300.00051 * 20 9 8 22 22 C 1.52998 * 109.46946 * 299.99592 * 21 20 9 23 23 C 1.53003 * 109.46834 * 60.00343 * 22 21 20 24 24 C 1.52995 * 109.47401 * 178.72832 * 9 8 6 25 25 C 1.53002 * 117.49476 * 116.40089 * 5 4 3 26 26 C 1.53005 * 117.49694 * 185.05749 * 5 4 3 27 27 O 1.34042 * 106.44923 * 0.24120 * 4 3 2 28 28 N 1.20925 * 111.56499 * 359.56580 * 27 4 3 29 29 H 1.08992 * 109.47496 * 89.99942 * 1 2 3 30 30 H 1.08996 * 109.47361 * 210.00296 * 1 2 3 31 31 H 1.09004 * 109.46694 * 329.99589 * 1 2 3 32 32 H 1.07995 * 128.00850 * 359.96849 * 3 2 1 33 33 H 0.96998 * 120.00172 * 4.12047 * 8 6 5 34 34 H 1.08997 * 109.47039 * 178.51326 * 10 9 8 35 35 H 1.08997 * 109.47585 * 298.51778 * 10 9 8 36 36 H 0.96991 * 120.00308 * 354.67985 * 11 10 9 37 37 H 0.97002 * 120.00067 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47446 * 60.00037 * 20 9 8 39 39 H 1.09001 * 109.47577 * 180.02562 * 20 9 8 40 40 H 1.09010 * 109.47148 * 180.02562 * 21 20 9 41 41 H 1.08995 * 109.47446 * 60.00232 * 21 20 9 42 42 H 1.08996 * 109.47700 * 300.00025 * 22 21 20 43 43 H 1.09004 * 109.47101 * 180.02562 * 22 21 20 44 44 H 1.09009 * 109.47195 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.47141 * 60.00127 * 23 22 21 46 46 H 1.08996 * 109.47703 * 179.97438 * 24 9 8 47 47 H 1.09003 * 109.47343 * 300.00592 * 24 9 8 48 48 H 1.09005 * 117.49699 * 215.00228 * 25 5 4 49 49 H 1.08994 * 117.49899 * 0.02562 * 25 5 4 50 50 H 1.08997 * 117.49844 * 359.97438 * 26 5 4 51 51 H 1.08998 * 117.49847 * 144.97544 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3695 0.0003 6 6 4.8626 2.7209 -0.6653 7 8 5.6378 2.9782 -1.5619 8 7 3.9658 3.6436 -0.2644 9 6 3.8705 4.9260 -0.9663 10 6 3.5468 4.6773 -2.4409 11 7 2.2881 3.9352 -2.5461 12 6 1.7379 3.6910 -3.7762 13 1 2.2318 4.0459 -4.6687 14 6 0.5451 2.9883 -3.8758 15 7 -0.0571 2.5561 -2.7881 16 14 -0.2050 2.6546 -5.5538 17 1 0.3107 1.3649 -6.0790 18 1 -1.6832 2.5830 -5.4298 19 1 0.1610 3.7507 -6.4864 20 6 5.2035 5.6686 -0.8551 21 6 5.5273 5.9171 0.6195 22 6 4.4185 6.7624 1.2496 23 6 3.0854 6.0197 1.1383 24 6 2.7617 5.7711 -0.3363 25 6 5.8166 1.2074 1.2162 26 6 6.1957 0.5610 -0.1185 27 8 3.4537 -0.7254 -0.0045 28 7 2.2868 -1.0424 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 2.0710 2.1743 -0.0005 33 1 3.3862 3.4602 0.4915 34 1 3.4498 5.6322 -2.9576 35 1 4.3495 4.0976 -2.8964 36 1 1.8444 3.6167 -1.7446 37 1 -0.8905 2.0647 -2.8578 38 1 5.9935 5.0665 -1.3041 39 1 5.1325 6.6229 -1.3770 40 1 6.4768 6.4467 0.6988 41 1 5.5982 4.9631 1.1417 42 1 4.3476 7.7165 0.7274 43 1 4.6493 6.9398 2.3000 44 1 2.2955 6.6217 1.5876 45 1 3.1563 5.0656 1.6606 46 1 2.6910 6.7254 -0.8582 47 1 1.8120 5.2421 -0.4156 48 1 6.3896 2.0783 1.5347 49 1 5.4783 0.5488 2.0161 50 1 6.1066 -0.5225 -0.1961 51 1 7.0179 1.0064 -0.6786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570799961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:28 Heat of formation + Delta-G solvation = 55.850882 kcal Electronic energy + Delta-G solvation = -33575.639301 eV Core-core repulsion = 29479.214397 eV Total energy + Delta-G solvation = -4096.424904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.53684 -40.59740 -38.47621 -36.32327 -34.70032 -34.34625 -33.28207 -31.45020 -30.94907 -30.67523 -29.27912 -28.19052 -25.28757 -24.83592 -23.13770 -22.87648 -22.46325 -22.27425 -21.20701 -20.49982 -19.30548 -18.86320 -17.72117 -17.22397 -17.13561 -16.46824 -15.51821 -15.22963 -15.02755 -14.71929 -14.49597 -14.22904 -13.76539 -13.67610 -13.29260 -13.21100 -13.05606 -12.95040 -12.76755 -12.56627 -12.25737 -12.18264 -12.10317 -12.05703 -11.70640 -11.64860 -11.37520 -11.18580 -10.99131 -10.89870 -10.84764 -10.78590 -10.63015 -10.54349 -10.19923 -10.09397 -9.95980 -9.65638 -9.49575 -9.38259 -8.84473 -8.73637 -8.58762 -6.83091 -5.73566 -2.98509 1.70595 2.60562 2.76934 3.19566 3.37048 3.45312 3.51050 3.51943 3.89320 4.36372 4.60974 4.61882 4.64981 4.80755 4.86335 4.89021 4.92411 5.06048 5.28479 5.32423 5.33929 5.45568 5.55689 5.62275 5.62982 5.63474 5.68436 5.70134 5.77718 5.80315 5.84004 5.91739 6.01408 6.03019 6.09251 6.12889 6.18707 6.20488 6.28135 6.30497 6.32575 6.38245 6.49840 6.55042 6.63884 6.66236 6.88273 7.09392 7.75294 7.80960 8.45866 8.50831 8.64034 9.58118 10.14561 10.51167 11.48791 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.006006 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.294496 B = 4660.842446 C = 6764.513010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.041 3.959 3 C -0.188 4.188 4 C -0.008 4.008 5 C -0.086 4.086 6 C 0.571 3.429 7 O -0.519 6.519 8 N -0.703 5.703 9 C 0.177 3.823 10 C 0.139 3.861 11 N -0.724 5.724 12 C -0.231 4.231 13 H 0.066 0.934 14 C -0.011 4.011 15 N -0.928 5.928 16 Si 0.901 3.099 17 H -0.293 1.293 18 H -0.293 1.293 19 H -0.284 1.284 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.144 4.144 26 C -0.132 4.132 27 O 0.093 5.907 28 N -0.376 5.376 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.171 0.829 33 H 0.395 0.605 34 H 0.026 0.974 35 H 0.041 0.959 36 H 0.381 0.619 37 H 0.251 0.749 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.110 0.890 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 2.849 13.972 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.071 4.071 5 C -0.090 4.090 6 C 0.355 3.645 7 O -0.394 6.394 8 N -0.354 5.354 9 C 0.091 3.909 10 C 0.011 3.989 11 N -0.368 5.368 12 C -0.362 4.362 13 H 0.084 0.916 14 C -0.207 4.207 15 N -0.578 5.578 16 Si 0.732 3.268 17 H -0.221 1.221 18 H -0.219 1.219 19 H -0.210 1.210 20 C -0.168 4.168 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.181 4.181 26 C -0.169 4.169 27 O 0.029 5.971 28 N -0.083 5.083 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.188 0.812 33 H 0.231 0.769 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.215 0.785 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.126 0.874 49 H 0.125 0.875 50 H 0.128 0.872 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.483 1.743 13.118 16.280 hybrid contribution -1.242 0.399 -0.597 1.435 sum 8.241 2.143 12.521 15.142 Atomic orbital electron populations 1.20120 0.85726 1.02443 1.04388 1.23520 0.99157 0.88351 1.00719 1.22345 0.90347 1.01473 1.06760 1.22674 0.95234 0.83979 1.05232 1.19407 0.88026 0.95101 1.06492 1.18658 0.80622 0.83141 0.82062 1.90649 1.40730 1.79146 1.28908 1.45990 1.38547 1.16322 1.34562 1.20631 0.94906 0.81976 0.93356 1.21104 0.90612 0.95867 0.91351 1.42198 1.22626 1.65834 1.06176 1.19186 1.02865 1.28496 0.85682 0.91570 1.24596 0.98078 1.01336 0.96652 1.69626 1.19031 1.43268 1.25830 0.86281 0.78266 0.77985 0.84220 1.22051 1.21923 1.20977 1.21925 0.97983 1.00477 0.96405 1.21455 0.97702 0.99686 0.96202 1.21544 0.95127 0.98872 1.00013 1.21571 0.97127 1.00195 0.96880 1.21779 0.98635 1.00494 0.94795 1.23205 0.99903 1.03714 0.91316 1.23100 0.95254 0.99823 0.98744 1.84722 1.21972 1.21925 1.68525 1.73775 0.89071 1.24007 1.21417 0.89108 0.91789 0.90026 0.81192 0.76921 0.95577 0.94106 0.78513 0.93916 0.89661 0.91417 0.92523 0.92306 0.92089 0.92577 0.91926 0.92391 0.90444 0.90096 0.87384 0.87475 0.87203 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.47 36.00 0.38 -0.74 16 2 C 0.04 0.74 7.33 -82.10 -0.60 0.14 16 3 C -0.19 -3.31 10.08 -39.38 -0.40 -3.70 16 4 C -0.01 -0.13 6.77 -35.30 -0.24 -0.36 16 5 C -0.09 -1.22 2.45 -156.81 -0.38 -1.60 16 6 C 0.57 9.27 6.43 -10.99 -0.07 9.20 16 7 O -0.52 -9.90 12.71 5.56 0.07 -9.83 16 8 N -0.70 -10.27 2.82 -47.61 -0.13 -10.40 16 9 C 0.18 2.71 0.32 -131.82 -0.04 2.66 16 10 C 0.14 2.83 4.92 -4.04 -0.02 2.81 16 11 N -0.72 -17.38 5.12 -59.91 -0.31 -17.69 16 12 C -0.23 -6.37 9.99 -15.06 -0.15 -6.52 16 13 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 15 N -0.93 -25.84 13.06 55.49 0.72 -25.12 16 16 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 17 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 C -0.13 -1.75 4.54 -26.73 -0.12 -1.88 16 21 C -0.11 -1.24 5.77 -26.73 -0.15 -1.39 16 22 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 23 C -0.12 -1.29 5.75 -26.73 -0.15 -1.45 16 24 C -0.12 -1.65 4.63 -26.73 -0.12 -1.77 16 25 C -0.14 -1.46 9.94 -26.69 -0.27 -1.73 16 26 C -0.13 -1.58 9.69 -26.69 -0.26 -1.84 16 27 O 0.09 1.62 10.97 17.17 0.19 1.81 16 28 N -0.38 -6.99 12.07 33.43 0.40 -6.58 16 29 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.17 2.97 5.74 -52.49 -0.30 2.67 16 33 H 0.40 5.19 5.53 -40.82 -0.23 4.97 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.95 6.25 -51.93 -0.32 0.62 16 36 H 0.38 9.15 6.04 -40.82 -0.25 8.90 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.08 1.33 6.13 -51.93 -0.32 1.01 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.06 0.65 7.60 -51.93 -0.39 0.26 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 45 H 0.06 0.59 6.83 -51.93 -0.35 0.24 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.08 1.31 7.07 -51.93 -0.37 0.94 16 48 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.11 1.23 8.00 -51.93 -0.42 0.82 16 51 H 0.12 1.39 7.83 -51.93 -0.41 0.99 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -31.20 398.98 -8.90 -40.09 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.97 Total: 14.10 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.86 Total: -9.90 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.69 Total: -59.80 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.26 Total: -8.02 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.20 -8.90 -40.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570799961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.944 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds