Wall clock time and date at job start Wed Apr 1 2020 04:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41386 * 126.80360 * 2 1 4 4 C 1.35451 * 103.98488 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.77444 * 179.97438 * 4 3 2 6 6 C 1.50694 * 115.55172 * 330.73096 * 5 4 3 7 7 O 1.21282 * 119.99764 * 235.45197 * 6 5 4 8 8 N 1.34773 * 120.00052 * 55.44870 * 6 5 4 9 9 C 1.46503 * 119.99954 * 183.83902 * 8 6 5 10 10 C 1.53000 * 109.46917 * 58.72974 * 9 8 6 11 11 N 1.46502 * 109.46909 * 58.51612 * 10 9 8 12 12 C 1.36947 * 119.99786 * 174.68262 * 11 10 9 13 13 H 1.07996 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.38806 * 119.99695 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00337 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99911 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47310 * 89.99317 * 16 14 12 18 18 H 1.48504 * 109.47038 * 209.99940 * 16 14 12 19 19 H 1.48502 * 109.46773 * 329.99310 * 16 14 12 20 20 C 1.52996 * 109.47328 * 298.73398 * 9 8 6 21 21 C 1.53002 * 109.46817 * 300.00051 * 20 9 8 22 22 C 1.52998 * 109.46946 * 299.99592 * 21 20 9 23 23 C 1.53003 * 109.46834 * 60.00343 * 22 21 20 24 24 C 1.52995 * 109.47401 * 178.72832 * 9 8 6 25 25 C 1.53002 * 117.49476 * 116.40089 * 5 4 3 26 26 C 1.53005 * 117.49694 * 185.05749 * 5 4 3 27 27 O 1.34042 * 106.44923 * 0.24120 * 4 3 2 28 28 N 1.20925 * 111.56499 * 359.56580 * 27 4 3 29 29 H 1.08992 * 109.47496 * 89.99942 * 1 2 3 30 30 H 1.08996 * 109.47361 * 210.00296 * 1 2 3 31 31 H 1.09004 * 109.46694 * 329.99589 * 1 2 3 32 32 H 1.07995 * 128.00850 * 359.96849 * 3 2 1 33 33 H 0.96998 * 120.00172 * 4.12047 * 8 6 5 34 34 H 1.08997 * 109.47039 * 178.51326 * 10 9 8 35 35 H 1.08997 * 109.47585 * 298.51778 * 10 9 8 36 36 H 0.96991 * 120.00308 * 354.67985 * 11 10 9 37 37 H 0.97002 * 120.00067 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47446 * 60.00037 * 20 9 8 39 39 H 1.09001 * 109.47577 * 180.02562 * 20 9 8 40 40 H 1.09010 * 109.47148 * 180.02562 * 21 20 9 41 41 H 1.08995 * 109.47446 * 60.00232 * 21 20 9 42 42 H 1.08996 * 109.47700 * 300.00025 * 22 21 20 43 43 H 1.09004 * 109.47101 * 180.02562 * 22 21 20 44 44 H 1.09009 * 109.47195 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.47141 * 60.00127 * 23 22 21 46 46 H 1.08996 * 109.47703 * 179.97438 * 24 9 8 47 47 H 1.09003 * 109.47343 * 300.00592 * 24 9 8 48 48 H 1.09005 * 117.49699 * 215.00228 * 25 5 4 49 49 H 1.08994 * 117.49899 * 0.02562 * 25 5 4 50 50 H 1.08997 * 117.49844 * 359.97438 * 26 5 4 51 51 H 1.08998 * 117.49847 * 144.97544 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3695 0.0003 6 6 4.8626 2.7209 -0.6653 7 8 5.6378 2.9782 -1.5619 8 7 3.9658 3.6436 -0.2644 9 6 3.8705 4.9260 -0.9663 10 6 3.5468 4.6773 -2.4409 11 7 2.2881 3.9352 -2.5461 12 6 1.7379 3.6910 -3.7762 13 1 2.2318 4.0459 -4.6687 14 6 0.5451 2.9883 -3.8758 15 7 -0.0571 2.5561 -2.7881 16 14 -0.2050 2.6546 -5.5538 17 1 0.3107 1.3649 -6.0790 18 1 -1.6832 2.5830 -5.4298 19 1 0.1610 3.7507 -6.4864 20 6 5.2035 5.6686 -0.8551 21 6 5.5273 5.9171 0.6195 22 6 4.4185 6.7624 1.2496 23 6 3.0854 6.0197 1.1383 24 6 2.7617 5.7711 -0.3363 25 6 5.8166 1.2074 1.2162 26 6 6.1957 0.5610 -0.1185 27 8 3.4537 -0.7254 -0.0045 28 7 2.2868 -1.0424 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 2.0710 2.1743 -0.0005 33 1 3.3862 3.4602 0.4915 34 1 3.4498 5.6322 -2.9576 35 1 4.3495 4.0976 -2.8964 36 1 1.8444 3.6167 -1.7446 37 1 -0.8905 2.0647 -2.8578 38 1 5.9935 5.0665 -1.3041 39 1 5.1325 6.6229 -1.3770 40 1 6.4768 6.4467 0.6988 41 1 5.5982 4.9631 1.1417 42 1 4.3476 7.7165 0.7274 43 1 4.6493 6.9398 2.3000 44 1 2.2955 6.6217 1.5876 45 1 3.1563 5.0656 1.6606 46 1 2.6910 6.7254 -0.8582 47 1 1.8120 5.2421 -0.4156 48 1 6.3896 2.0783 1.5347 49 1 5.4783 0.5488 2.0161 50 1 6.1066 -0.5225 -0.1961 51 1 7.0179 1.0064 -0.6786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570799961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:27 Heat of formation + Delta-G solvation = 38.555246 kcal Electronic energy + Delta-G solvation = -33576.389296 eV Core-core repulsion = 29479.214397 eV Total energy + Delta-G solvation = -4097.174899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.91278 -41.83147 -39.59636 -37.46666 -36.35734 -35.73288 -34.68884 -33.11215 -32.38131 -31.69374 -30.76074 -29.52259 -26.99229 -25.99556 -24.72183 -24.21552 -23.47775 -23.38644 -22.51088 -21.69167 -20.49985 -20.09013 -19.24339 -18.92203 -18.55930 -17.69696 -16.85384 -16.58812 -16.31206 -16.15024 -15.86670 -15.53968 -15.17184 -14.83817 -14.79868 -14.58563 -14.37527 -14.25115 -14.13391 -13.90191 -13.70576 -13.42211 -13.34410 -13.15953 -13.01143 -12.87120 -12.73583 -12.61221 -12.52794 -12.36137 -12.10319 -12.07809 -11.95865 -11.84668 -11.72238 -11.43303 -11.15187 -11.09529 -10.95951 -10.88233 -10.53076 -10.05890 -9.89438 -8.86563 -7.88743 -5.12940 0.39862 1.24653 1.42196 1.44665 1.45340 1.50671 2.00069 2.19256 2.55864 2.82094 3.22708 3.28759 3.41747 3.54951 3.73250 3.80008 3.87638 3.88704 3.95940 4.10103 4.18022 4.28434 4.32864 4.49371 4.53720 4.56855 4.64030 4.64470 4.65979 4.69208 4.71955 4.81551 4.88096 4.89791 4.90369 4.91968 4.97876 5.14439 5.15910 5.18793 5.24411 5.28871 5.30077 5.34254 5.41291 5.50002 5.53910 5.56593 5.73051 6.33112 6.58997 7.26293 7.28115 7.41772 8.14184 8.45504 9.31878 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.006006 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.294496 B = 4660.842446 C = 6764.513010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.026 3.974 3 C -0.208 4.208 4 C 0.006 3.994 5 C -0.116 4.116 6 C 0.567 3.433 7 O -0.553 6.553 8 N -0.692 5.692 9 C 0.185 3.815 10 C 0.139 3.861 11 N -0.724 5.724 12 C -0.248 4.248 13 H 0.056 0.944 14 C -0.054 4.054 15 N -0.937 5.937 16 Si 0.953 3.047 17 H -0.300 1.300 18 H -0.289 1.289 19 H -0.279 1.279 20 C -0.124 4.124 21 C -0.106 4.106 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.102 4.102 26 C -0.133 4.133 27 O 0.093 5.907 28 N -0.393 5.393 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.404 0.596 34 H 0.021 0.979 35 H 0.012 0.988 36 H 0.380 0.620 37 H 0.250 0.750 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.130 0.870 49 H 0.127 0.873 50 H 0.117 0.883 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.063 3.524 16.321 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.132 4.132 3 C -0.230 4.230 4 C -0.058 4.058 5 C -0.120 4.120 6 C 0.352 3.648 7 O -0.431 6.431 8 N -0.344 5.344 9 C 0.099 3.901 10 C 0.012 3.988 11 N -0.368 5.368 12 C -0.381 4.381 13 H 0.074 0.926 14 C -0.249 4.249 15 N -0.587 5.587 16 Si 0.784 3.216 17 H -0.229 1.229 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.162 4.162 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.171 4.171 27 O 0.029 5.971 28 N -0.101 5.101 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.184 0.816 33 H 0.241 0.759 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.214 0.786 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.148 0.852 49 H 0.146 0.854 50 H 0.135 0.865 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.345 2.431 15.491 18.786 hybrid contribution -1.464 0.193 -1.407 2.039 sum 8.882 2.624 14.084 16.856 Atomic orbital electron populations 1.20118 0.84728 1.04131 1.03213 1.23887 1.00097 0.88541 1.00630 1.22375 0.90973 1.01281 1.08352 1.22996 0.95909 0.83591 1.03295 1.19442 0.87988 0.94140 1.10479 1.19022 0.80194 0.83945 0.81596 1.90638 1.42187 1.79987 1.30319 1.45909 1.38108 1.15940 1.34438 1.20480 0.96659 0.82816 0.90142 1.21143 0.88116 0.94349 0.95235 1.42212 1.23546 1.66044 1.05043 1.19384 1.03250 1.28706 0.86713 0.92634 1.25183 0.98617 1.01689 0.99367 1.69716 1.18980 1.43291 1.26709 0.85465 0.77513 0.77307 0.81340 1.22863 1.21546 1.20401 1.21854 0.95827 0.99773 0.98791 1.21424 0.98906 1.00324 0.93724 1.21525 0.93729 0.98431 1.01350 1.21547 0.98327 1.01148 0.94094 1.21700 0.96582 0.99511 0.97332 1.23404 0.96376 1.03994 0.90187 1.23214 0.93475 1.00028 1.00343 1.84688 1.21612 1.22332 1.68466 1.73753 0.89479 1.24413 1.22441 0.91516 0.89617 0.88909 0.81564 0.75891 0.96135 0.97003 0.78615 0.94117 0.91848 0.91083 0.91027 0.92083 0.91783 0.90249 0.90553 0.91581 0.90650 0.92727 0.85212 0.85435 0.86517 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.47 71.23 0.75 -1.33 16 2 C 0.03 0.96 7.33 43.58 0.32 1.28 16 3 C -0.21 -7.36 10.08 22.40 0.23 -7.14 16 4 C 0.01 0.19 6.77 25.04 0.17 0.36 16 5 C -0.12 -3.16 2.45 -53.67 -0.13 -3.29 16 6 C 0.57 18.31 6.43 87.66 0.56 18.87 16 7 O -0.55 -21.54 12.71 -3.04 -0.04 -21.58 16 8 N -0.69 -20.01 2.82 -422.94 -1.19 -21.20 16 9 C 0.18 5.67 0.32 3.60 0.00 5.67 16 10 C 0.14 5.90 4.92 86.38 0.42 6.33 16 11 N -0.72 -35.94 5.12 -343.45 -1.76 -37.69 16 12 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 13 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 14 C -0.05 -3.06 5.50 84.86 0.47 -2.59 16 15 N -0.94 -52.93 13.06 21.65 0.28 -52.65 16 16 Si 0.95 46.96 29.55 68.60 2.03 48.99 16 17 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 18 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 C -0.12 -3.27 4.54 30.59 0.14 -3.13 16 21 C -0.11 -2.03 5.77 30.59 0.18 -1.86 16 22 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 23 C -0.11 -2.16 5.75 30.60 0.18 -1.98 16 24 C -0.11 -3.07 4.63 30.59 0.14 -2.93 16 25 C -0.10 -1.75 9.94 30.62 0.30 -1.45 16 26 C -0.13 -2.97 9.69 30.62 0.30 -2.68 16 27 O 0.09 3.18 10.97 71.61 0.79 3.97 16 28 N -0.39 -14.56 12.07 -49.54 -0.60 -15.16 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.17 5.92 5.74 -2.91 -0.02 5.90 16 33 H 0.40 10.28 5.53 -92.71 -0.51 9.77 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.01 0.59 6.25 -2.39 -0.01 0.57 16 36 H 0.38 18.79 6.04 -92.72 -0.56 18.23 16 37 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 38 H 0.06 1.99 6.13 -2.39 -0.01 1.97 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 1.16 7.60 -2.39 -0.02 1.14 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.07 1.16 6.83 -2.39 -0.02 1.14 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 1.78 7.07 -2.39 -0.02 1.76 16 48 H 0.13 1.72 8.14 -2.38 -0.02 1.71 16 49 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.12 2.43 8.00 -2.39 -0.02 2.41 16 51 H 0.11 2.60 7.83 -2.39 -0.02 2.58 16 Total: -1.00 -69.19 398.98 4.44 -64.75 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -0.11 Total: 41.34 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.04 Total: -10.77 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -3.26 Total: -126.70 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.75 Total: -17.61 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -69.19 4.44 -64.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570799961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.306 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds