Wall clock time and date at job start Wed Apr 1 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 110.91391 * 2 1 4 4 C 1.54912 * 111.00316 * 236.09667 * 2 1 3 5 5 N 1.47428 * 104.83195 * 204.91757 * 4 2 1 6 6 C 1.34771 * 125.64487 * 204.09708 * 5 4 2 7 7 O 1.21280 * 120.00452 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99450 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46804 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46932 * 180.02562 * 9 8 6 11 11 N 1.46495 * 109.47015 * 180.02562 * 10 9 8 12 12 C 1.35766 * 119.62402 * 269.72315 * 11 10 9 13 13 C 1.35351 * 120.70055 * 179.75814 * 12 11 10 14 14 C 1.40200 * 119.94895 * 0.51660 * 13 12 11 15 15 C 1.36394 * 119.26488 * 359.74659 * 14 13 12 16 16 C 1.34664 * 119.63003 * 89.99645 * 11 10 9 17 17 O 1.22068 * 119.97995 * 0.02562 * 16 11 10 18 18 C 1.47026 * 108.70126 * 24.12608 * 5 4 2 19 19 C 1.54321 * 107.26948 * 358.94607 * 18 5 4 20 20 H 1.09011 * 110.71547 * 219.26152 * 19 18 5 21 21 N 1.46499 * 110.72131 * 96.16898 * 19 18 5 22 22 C 1.36935 * 119.99938 * 86.44823 * 21 19 18 23 23 H 1.08000 * 120.00518 * 359.72965 * 22 21 19 24 24 C 1.38817 * 119.99990 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99869 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46676 * 90.00727 * 26 24 22 28 28 H 1.48502 * 109.46977 * 210.00025 * 26 24 22 29 29 H 1.48494 * 109.47494 * 330.00753 * 26 24 22 30 30 H 1.08994 * 109.47417 * 296.09669 * 1 2 3 31 31 H 1.09003 * 109.47115 * 56.10013 * 1 2 3 32 32 H 1.09006 * 109.47238 * 176.09664 * 1 2 3 33 33 H 1.09007 * 109.47097 * 183.90039 * 3 2 1 34 34 H 1.09000 * 109.47176 * 303.90159 * 3 2 1 35 35 H 1.08992 * 109.47398 * 63.90336 * 3 2 1 36 36 H 1.09004 * 110.36734 * 86.07895 * 4 2 1 37 37 H 1.08998 * 110.37152 * 323.75625 * 4 2 1 38 38 H 1.08990 * 109.47454 * 299.99545 * 8 6 5 39 39 H 1.09000 * 109.46912 * 60.00399 * 8 6 5 40 40 H 1.08996 * 109.47736 * 300.00340 * 9 8 6 41 41 H 1.09000 * 109.46729 * 60.00693 * 9 8 6 42 42 H 1.09003 * 109.46897 * 299.99887 * 10 9 8 43 43 H 1.08993 * 109.47098 * 59.99965 * 10 9 8 44 44 H 1.07997 * 119.64905 * 0.02562 * 12 11 10 45 45 H 1.08003 * 120.02459 * 180.23583 * 13 12 11 46 46 H 1.08001 * 120.36184 * 179.76557 * 14 13 12 47 47 H 1.07998 * 120.34591 * 180.02562 * 15 14 13 48 48 H 1.08997 * 109.88145 * 239.52265 * 18 5 4 49 49 H 1.09005 * 109.87489 * 118.36057 * 18 5 4 50 50 H 0.96999 * 119.99984 * 266.44758 * 21 19 18 51 51 H 0.96996 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4291 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4476 -1.5616 -1.5940 7 8 4.3009 -1.4998 -2.7963 8 6 5.7711 -1.9945 -1.0177 9 6 6.7486 -2.2960 -2.1554 10 6 8.0921 -2.7361 -1.5703 11 7 9.0283 -3.0242 -2.6597 12 6 9.0993 -4.2808 -3.1689 13 6 9.9529 -4.5700 -4.1787 14 6 10.7831 -3.5686 -4.7018 15 6 10.7141 -2.3081 -4.1854 16 6 9.8126 -2.0410 -3.1409 17 8 9.7412 -0.9176 -2.6690 18 6 3.4674 -1.2741 0.6961 19 6 2.0861 -0.8080 1.2022 20 1 2.1920 -0.1725 2.0815 21 7 1.2268 -1.9574 1.4962 22 6 1.2816 -2.5563 2.7264 23 1 1.9613 -2.1840 3.4785 24 6 0.4669 -3.6452 3.0052 25 7 -0.3577 -4.1023 2.0868 26 14 0.5422 -4.4626 4.6831 27 1 -0.4352 -3.8139 5.5939 28 1 0.2108 -5.9038 4.5470 29 1 1.9103 -4.3198 5.2425 30 1 -0.3634 0.4520 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 3.1636 1.4025 -0.0699 34 1 1.6704 1.9731 -0.8530 35 1 1.7836 1.9299 0.9228 36 1 2.1560 -0.1720 -2.0837 37 1 1.4519 -1.6704 -1.4025 38 1 6.1741 -1.1969 -0.3938 39 1 5.6287 -2.8911 -0.4143 40 1 6.3455 -3.0938 -2.7791 41 1 6.8910 -1.3997 -2.7591 42 1 8.4955 -1.9385 -0.9465 43 1 7.9494 -3.6325 -0.9668 44 1 8.4648 -5.0568 -2.7668 45 1 9.9977 -5.5724 -4.5781 46 1 11.4694 -3.7929 -5.5050 47 1 11.3453 -1.5234 -4.5755 48 1 4.2426 -0.5998 1.0599 49 1 3.6650 -2.2894 1.0400 50 1 0.6190 -2.2943 0.8194 51 1 -0.9267 -4.8634 2.2815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571562806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:54 Heat of formation + Delta-G solvation = -28.992913 kcal Electronic energy + Delta-G solvation = -30595.876846 eV Core-core repulsion = 26495.772839 eV Total energy + Delta-G solvation = -4100.104007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56658 -40.03550 -38.08708 -37.10412 -35.71767 -33.97324 -33.31357 -32.76324 -30.80945 -30.13008 -28.14210 -27.96494 -26.72282 -25.88064 -24.20815 -23.87149 -23.21681 -21.87466 -21.44439 -19.05158 -18.67373 -17.76940 -17.55173 -17.27419 -16.66515 -16.52447 -16.06653 -15.74678 -15.41190 -15.01463 -14.65504 -14.55698 -14.33170 -14.12782 -13.88011 -13.55751 -13.10515 -12.91689 -12.79167 -12.61905 -12.49953 -12.32184 -12.12436 -12.07744 -12.00646 -11.85605 -11.72087 -11.62542 -11.49495 -11.04288 -10.95940 -10.94777 -10.59951 -10.47866 -10.37974 -10.28663 -10.13761 -9.87957 -9.72503 -9.58825 -9.04570 -8.24633 -8.24249 -7.11245 -5.88760 -3.18840 0.55424 1.61301 2.36148 2.88936 3.29358 3.35317 3.40845 3.42694 3.43005 4.26310 4.33701 4.47233 4.51800 4.58291 4.77752 4.81746 4.85667 4.94778 4.99901 5.07202 5.15081 5.20188 5.26235 5.30030 5.41818 5.50438 5.58390 5.67021 5.69030 5.72793 5.78631 5.85722 5.89441 5.95431 5.98195 6.06573 6.10472 6.17893 6.20973 6.24707 6.25875 6.33637 6.37724 6.55047 6.64197 6.74704 6.83023 6.88954 7.58885 7.81646 7.88571 8.29044 8.43001 9.41055 9.95997 10.30832 11.33294 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.002308 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.153397 B =12130.427393 C =13535.714729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.526 3.474 7 O -0.557 6.557 8 C -0.132 4.132 9 C -0.115 4.115 10 C 0.088 3.912 11 N -0.493 5.493 12 C 0.139 3.861 13 C -0.239 4.239 14 C -0.017 4.017 15 C -0.247 4.247 16 C 0.511 3.489 17 O -0.551 6.551 18 C 0.071 3.929 19 C 0.178 3.822 20 H 0.070 0.930 21 N -0.712 5.712 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.163 0.837 45 H 0.144 0.856 46 H 0.133 0.867 47 H 0.146 0.854 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.387 0.613 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.384 1.442 -9.629 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.187 4.187 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.315 3.685 7 O -0.436 6.436 8 C -0.172 4.172 9 C -0.154 4.154 10 C -0.034 4.034 11 N -0.203 5.203 12 C 0.011 3.989 13 C -0.262 4.262 14 C -0.039 4.039 15 C -0.269 4.269 16 C 0.313 3.687 17 O -0.434 6.434 18 C -0.055 4.055 19 C 0.066 3.934 20 H 0.088 0.912 21 N -0.353 5.353 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.180 0.820 45 H 0.162 0.838 46 H 0.151 0.849 47 H 0.164 0.836 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.223 0.777 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.303 2.114 -9.768 19.982 hybrid contribution -0.159 -0.902 0.722 1.166 sum 17.143 1.213 -9.047 19.422 Atomic orbital electron populations 1.21576 0.92795 1.02862 1.01058 1.22005 0.96587 0.94811 0.95647 1.21680 1.00600 0.94843 1.01592 1.22263 0.82973 0.98033 0.96950 1.48427 1.11949 1.65499 1.07818 1.20123 0.84951 0.77295 0.86153 1.90673 1.83500 1.54653 1.14770 1.21495 0.92928 1.03676 0.99144 1.21624 0.92191 1.03561 0.98010 1.22112 0.89114 1.03718 0.88408 1.45591 1.33675 1.09307 1.31701 1.22042 0.96570 0.86646 0.93665 1.20661 1.02349 1.01474 1.01737 1.21440 0.94421 0.92231 0.95762 1.22133 1.04395 0.99035 1.01332 1.17192 0.81944 0.84545 0.85023 1.90974 1.70196 1.20644 1.61540 1.23282 1.01563 1.02060 0.78602 1.21224 0.88235 0.89604 0.94326 0.91213 1.42461 1.45467 1.32732 1.14685 1.19213 1.18431 1.09456 0.90609 0.91018 1.24751 0.98972 0.98893 0.97892 1.69655 1.27297 1.27546 1.33131 0.86206 0.77580 0.78695 0.83742 1.21645 1.21810 1.20729 0.92072 0.93626 0.91219 0.92879 0.92825 0.92302 0.91305 0.91340 0.88692 0.88503 0.90660 0.90279 0.87930 0.88747 0.82005 0.83796 0.84914 0.83601 0.92720 0.90461 0.77744 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.22 37.16 0.31 -1.66 16 2 C -0.09 -1.37 0.83 -152.36 -0.13 -1.50 16 3 C -0.13 -1.69 8.57 37.15 0.32 -1.37 16 4 C 0.12 1.99 5.81 -2.53 -0.01 1.98 16 5 N -0.60 -9.89 3.31 -170.51 -0.56 -10.45 16 6 C 0.53 8.58 7.85 -10.98 -0.09 8.49 16 7 O -0.56 -10.86 16.24 5.56 0.09 -10.77 16 8 C -0.13 -1.57 4.89 -27.88 -0.14 -1.71 16 9 C -0.12 -1.32 4.83 -26.73 -0.13 -1.45 16 10 C 0.09 0.80 5.34 -4.04 -0.02 0.78 16 11 N -0.49 -4.84 2.58 -119.77 -0.31 -5.15 16 12 C 0.14 0.95 10.28 -16.84 -0.17 0.78 16 13 C -0.24 -1.46 10.01 -39.87 -0.40 -1.85 16 14 C -0.02 -0.12 10.10 -39.51 -0.40 -0.51 16 15 C -0.25 -2.42 9.99 -39.38 -0.39 -2.81 16 16 C 0.51 6.43 7.41 -15.45 -0.11 6.31 16 17 O -0.55 -9.06 16.64 4.86 0.08 -8.98 16 18 C 0.07 1.14 5.91 -3.06 -0.02 1.12 16 19 C 0.18 3.16 2.86 -66.10 -0.19 2.97 16 20 H 0.07 1.23 8.03 -51.92 -0.42 0.81 16 21 N -0.71 -16.04 4.61 -51.65 -0.24 -16.28 16 22 C -0.25 -6.23 9.98 -15.06 -0.15 -6.38 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 26 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 33 H 0.05 0.70 7.91 -51.93 -0.41 0.28 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.13 7.95 -51.93 -0.41 0.71 16 37 H 0.07 1.25 7.98 -51.93 -0.41 0.83 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 42 H 0.10 1.04 7.39 -51.93 -0.38 0.65 16 43 H 0.09 0.58 8.01 -51.93 -0.42 0.17 16 44 H 0.16 0.62 8.03 -52.49 -0.42 0.19 16 45 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 46 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 50 H 0.39 9.44 6.10 -40.82 -0.25 9.19 16 51 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 415.01 15.07 6.25 6.25 Total: -1.00 -33.89 415.01 -9.30 -43.18 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.49 Total: 9.00 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.82 Total: 2.87 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.39 Total: -57.68 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.89 -9.30 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571562806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.191 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds