Wall clock time and date at job start Wed Apr 1 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 110.91391 * 2 1 4 4 C 1.54912 * 111.00316 * 236.09667 * 2 1 3 5 5 N 1.47428 * 104.83195 * 204.91757 * 4 2 1 6 6 C 1.34771 * 125.64487 * 204.09708 * 5 4 2 7 7 O 1.21280 * 120.00452 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99450 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46804 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46932 * 180.02562 * 9 8 6 11 11 N 1.46495 * 109.47015 * 180.02562 * 10 9 8 12 12 C 1.35766 * 119.62402 * 269.72315 * 11 10 9 13 13 C 1.35351 * 120.70055 * 179.75814 * 12 11 10 14 14 C 1.40200 * 119.94895 * 0.51660 * 13 12 11 15 15 C 1.36394 * 119.26488 * 359.74659 * 14 13 12 16 16 C 1.34664 * 119.63003 * 89.99645 * 11 10 9 17 17 O 1.22068 * 119.97995 * 0.02562 * 16 11 10 18 18 C 1.47026 * 108.70126 * 24.12608 * 5 4 2 19 19 C 1.54321 * 107.26948 * 358.94607 * 18 5 4 20 20 H 1.09011 * 110.71547 * 219.26152 * 19 18 5 21 21 N 1.46499 * 110.72131 * 96.16898 * 19 18 5 22 22 C 1.36935 * 119.99938 * 86.44823 * 21 19 18 23 23 H 1.08000 * 120.00518 * 359.72965 * 22 21 19 24 24 C 1.38817 * 119.99990 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99869 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46676 * 90.00727 * 26 24 22 28 28 H 1.48502 * 109.46977 * 210.00025 * 26 24 22 29 29 H 1.48494 * 109.47494 * 330.00753 * 26 24 22 30 30 H 1.08994 * 109.47417 * 296.09669 * 1 2 3 31 31 H 1.09003 * 109.47115 * 56.10013 * 1 2 3 32 32 H 1.09006 * 109.47238 * 176.09664 * 1 2 3 33 33 H 1.09007 * 109.47097 * 183.90039 * 3 2 1 34 34 H 1.09000 * 109.47176 * 303.90159 * 3 2 1 35 35 H 1.08992 * 109.47398 * 63.90336 * 3 2 1 36 36 H 1.09004 * 110.36734 * 86.07895 * 4 2 1 37 37 H 1.08998 * 110.37152 * 323.75625 * 4 2 1 38 38 H 1.08990 * 109.47454 * 299.99545 * 8 6 5 39 39 H 1.09000 * 109.46912 * 60.00399 * 8 6 5 40 40 H 1.08996 * 109.47736 * 300.00340 * 9 8 6 41 41 H 1.09000 * 109.46729 * 60.00693 * 9 8 6 42 42 H 1.09003 * 109.46897 * 299.99887 * 10 9 8 43 43 H 1.08993 * 109.47098 * 59.99965 * 10 9 8 44 44 H 1.07997 * 119.64905 * 0.02562 * 12 11 10 45 45 H 1.08003 * 120.02459 * 180.23583 * 13 12 11 46 46 H 1.08001 * 120.36184 * 179.76557 * 14 13 12 47 47 H 1.07998 * 120.34591 * 180.02562 * 15 14 13 48 48 H 1.08997 * 109.88145 * 239.52265 * 18 5 4 49 49 H 1.09005 * 109.87489 * 118.36057 * 18 5 4 50 50 H 0.96999 * 119.99984 * 266.44758 * 21 19 18 51 51 H 0.96996 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4291 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4476 -1.5616 -1.5940 7 8 4.3009 -1.4998 -2.7963 8 6 5.7711 -1.9945 -1.0177 9 6 6.7486 -2.2960 -2.1554 10 6 8.0921 -2.7361 -1.5703 11 7 9.0283 -3.0242 -2.6597 12 6 9.0993 -4.2808 -3.1689 13 6 9.9529 -4.5700 -4.1787 14 6 10.7831 -3.5686 -4.7018 15 6 10.7141 -2.3081 -4.1854 16 6 9.8126 -2.0410 -3.1409 17 8 9.7412 -0.9176 -2.6690 18 6 3.4674 -1.2741 0.6961 19 6 2.0861 -0.8080 1.2022 20 1 2.1920 -0.1725 2.0815 21 7 1.2268 -1.9574 1.4962 22 6 1.2816 -2.5563 2.7264 23 1 1.9613 -2.1840 3.4785 24 6 0.4669 -3.6452 3.0052 25 7 -0.3577 -4.1023 2.0868 26 14 0.5422 -4.4626 4.6831 27 1 -0.4352 -3.8139 5.5939 28 1 0.2108 -5.9038 4.5470 29 1 1.9103 -4.3198 5.2425 30 1 -0.3634 0.4520 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 3.1636 1.4025 -0.0699 34 1 1.6704 1.9731 -0.8530 35 1 1.7836 1.9299 0.9228 36 1 2.1560 -0.1720 -2.0837 37 1 1.4519 -1.6704 -1.4025 38 1 6.1741 -1.1969 -0.3938 39 1 5.6287 -2.8911 -0.4143 40 1 6.3455 -3.0938 -2.7791 41 1 6.8910 -1.3997 -2.7591 42 1 8.4955 -1.9385 -0.9465 43 1 7.9494 -3.6325 -0.9668 44 1 8.4648 -5.0568 -2.7668 45 1 9.9977 -5.5724 -4.5781 46 1 11.4694 -3.7929 -5.5050 47 1 11.3453 -1.5234 -4.5755 48 1 4.2426 -0.5998 1.0599 49 1 3.6650 -2.2894 1.0400 50 1 0.6190 -2.2943 0.8194 51 1 -0.9267 -4.8634 2.2815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571562806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:53 Heat of formation + Delta-G solvation = -49.782199 kcal Electronic energy + Delta-G solvation = -30596.778337 eV Core-core repulsion = 26495.772839 eV Total energy + Delta-G solvation = -4101.005498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.30742 -41.36458 -39.43347 -37.95775 -36.50109 -35.70924 -34.65029 -33.68590 -32.58941 -30.79117 -29.43705 -29.12215 -28.03063 -27.00423 -25.67711 -24.82972 -24.10232 -23.06332 -22.51962 -20.39324 -19.94913 -19.08055 -18.54907 -18.27576 -17.84325 -17.33678 -17.27347 -16.77857 -16.59411 -16.22181 -15.90831 -15.75493 -15.43390 -15.30545 -15.05484 -14.79516 -14.52224 -14.17226 -13.92369 -13.80224 -13.42593 -13.29985 -13.24824 -13.09950 -13.02792 -12.92479 -12.79777 -12.77471 -12.72218 -12.64933 -12.56873 -12.14790 -12.05806 -11.87301 -11.82403 -11.44664 -11.28999 -11.11771 -10.99063 -10.97312 -10.83364 -9.62017 -8.99080 -8.95526 -7.90189 -5.18460 -0.05903 0.93711 1.51615 1.52441 1.60069 1.60194 1.64736 2.07981 2.59202 2.70311 3.34384 3.41363 3.64736 3.66717 3.76115 3.81530 3.88630 3.93537 3.98887 4.05939 4.14366 4.23201 4.29358 4.32809 4.41257 4.46349 4.48236 4.55066 4.57717 4.64054 4.68466 4.79080 4.87681 4.92703 4.94460 5.02480 5.05934 5.07708 5.10111 5.15158 5.22783 5.28419 5.34380 5.39370 5.41120 5.54856 5.60643 5.68346 6.12310 6.30805 6.58128 7.00323 7.12660 7.38613 8.12528 8.35852 9.33071 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.002308 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.153397 B =12130.427393 C =13535.714729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 C -0.123 4.123 4 C 0.120 3.880 5 N -0.606 5.606 6 C 0.518 3.482 7 O -0.595 6.595 8 C -0.123 4.123 9 C -0.104 4.104 10 C 0.091 3.909 11 N -0.494 5.494 12 C 0.130 3.870 13 C -0.234 4.234 14 C 0.006 3.994 15 C -0.286 4.286 16 C 0.490 3.510 17 O -0.613 6.613 18 C 0.081 3.919 19 C 0.168 3.832 20 H 0.079 0.921 21 N -0.723 5.723 22 C -0.232 4.232 23 H 0.083 0.917 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.967 3.033 27 H -0.292 1.292 28 H -0.303 1.303 29 H -0.266 1.266 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.090 0.910 43 H 0.135 0.865 44 H 0.199 0.801 45 H 0.181 0.819 46 H 0.166 0.834 47 H 0.142 0.858 48 H 0.089 0.911 49 H 0.063 0.937 50 H 0.374 0.626 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.212 0.556 -9.086 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.180 4.180 4 C -0.003 4.003 5 N -0.338 5.338 6 C 0.309 3.691 7 O -0.477 6.477 8 C -0.163 4.163 9 C -0.142 4.142 10 C -0.030 4.030 11 N -0.203 5.203 12 C 0.003 3.997 13 C -0.256 4.256 14 C -0.016 4.016 15 C -0.308 4.308 16 C 0.296 3.704 17 O -0.501 6.501 18 C -0.044 4.044 19 C 0.058 3.942 20 H 0.097 0.903 21 N -0.363 5.363 22 C -0.364 4.364 23 H 0.101 0.899 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.797 3.203 27 H -0.219 1.219 28 H -0.230 1.230 29 H -0.190 1.190 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.108 0.892 43 H 0.153 0.847 44 H 0.216 0.784 45 H 0.198 0.802 46 H 0.184 0.816 47 H 0.160 0.840 48 H 0.107 0.893 49 H 0.081 0.919 50 H 0.208 0.792 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.178 1.232 -9.215 21.313 hybrid contribution -0.713 -0.659 0.436 1.064 sum 18.465 0.573 -8.779 20.454 Atomic orbital electron populations 1.21506 0.93123 1.01230 1.01901 1.21955 0.96266 0.95947 0.93697 1.21637 1.00648 0.92870 1.02883 1.22203 0.83133 0.97316 0.97688 1.48529 1.11833 1.65369 1.08068 1.20934 0.86113 0.76354 0.85722 1.90653 1.84301 1.56192 1.16518 1.21524 0.90317 1.05103 0.99360 1.21467 0.93501 1.01766 0.97511 1.22127 0.87407 1.05142 0.88294 1.45610 1.33000 1.10007 1.31647 1.22781 0.97163 0.85940 0.93796 1.21198 1.00919 1.02736 1.00750 1.21874 0.93753 0.90876 0.95127 1.22134 1.05535 1.00770 1.02322 1.17670 0.82775 0.84368 0.85624 1.90917 1.72447 1.22924 1.63787 1.23090 1.01110 1.01982 0.78202 1.21482 0.88512 0.88502 0.95671 0.90301 1.42618 1.46149 1.33904 1.13630 1.19627 1.16876 1.08403 0.91491 0.89874 1.25475 0.99729 1.00387 1.00962 1.69817 1.28923 1.28271 1.35013 0.85232 0.78021 0.76872 0.80160 1.21945 1.23043 1.19029 0.92332 0.91370 0.94284 0.92628 0.91574 0.91022 0.91173 0.93830 0.86883 0.86231 0.91027 0.93948 0.89196 0.84735 0.78391 0.80220 0.81615 0.83969 0.89339 0.91854 0.79197 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 8.22 71.98 0.59 -3.12 16 2 C -0.08 -2.29 0.83 -50.79 -0.04 -2.33 16 3 C -0.12 -2.89 8.57 71.98 0.62 -2.28 16 4 C 0.12 3.96 5.81 86.86 0.51 4.46 16 5 N -0.61 -19.29 3.31 -811.77 -2.69 -21.98 16 6 C 0.52 16.58 7.85 87.66 0.69 17.27 16 7 O -0.59 -23.52 16.24 -3.03 -0.05 -23.57 16 8 C -0.12 -2.72 4.89 29.85 0.15 -2.58 16 9 C -0.10 -2.32 4.83 30.60 0.15 -2.17 16 10 C 0.09 1.55 5.34 86.38 0.46 2.01 16 11 N -0.49 -9.22 2.58 -650.97 -1.68 -10.90 16 12 C 0.13 1.38 10.28 83.42 0.86 2.23 16 13 C -0.23 -1.97 10.01 22.08 0.22 -1.75 16 14 C 0.01 0.06 10.10 22.32 0.23 0.29 16 15 C -0.29 -5.65 9.99 22.40 0.22 -5.43 16 16 C 0.49 12.80 7.41 84.82 0.63 13.42 16 17 O -0.61 -21.69 16.64 -5.54 -0.09 -21.78 16 18 C 0.08 2.45 5.91 86.73 0.51 2.96 16 19 C 0.17 5.74 2.86 46.18 0.13 5.87 16 20 H 0.08 2.58 8.03 -2.38 -0.02 2.56 16 21 N -0.72 -32.51 4.61 -317.33 -1.46 -33.97 16 22 C -0.23 -11.60 9.98 84.04 0.84 -10.76 16 23 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 25 N -0.97 -56.68 13.06 21.65 0.28 -56.40 16 26 Si 0.97 43.51 29.55 68.60 2.03 45.54 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.45 6.38 -2.38 -0.02 1.43 16 33 H 0.05 1.30 7.91 -2.38 -0.02 1.28 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 2.29 7.95 -2.39 -0.02 2.27 16 37 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 41 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 42 H 0.09 1.79 7.39 -2.39 -0.02 1.78 16 43 H 0.13 1.18 8.01 -2.39 -0.02 1.16 16 44 H 0.20 0.58 8.03 -2.91 -0.02 0.56 16 45 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 46 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 47 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.06 2.12 8.04 -2.38 -0.02 2.10 16 50 H 0.37 18.74 6.10 -92.71 -0.57 18.18 16 51 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -78.87 415.01 3.90 -74.97 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.35 Total: 33.46 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 7.22 Total: 14.63 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.55 Total: -123.25 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.14 Total: -45.35 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -78.87 3.90 -74.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571562806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal (2) G-P(sol) polarization free energy of solvation -78.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds