Wall clock time and date at job start Wed Apr 1 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.91545 * 2 1 4 4 C 1.55128 * 111.19191 * 236.09051 * 2 1 3 5 5 N 1.47427 * 104.72337 * 279.19153 * 4 2 1 6 6 C 1.34777 * 125.64493 * 155.81611 * 5 4 2 7 7 O 1.21273 * 120.00231 * 359.71867 * 6 5 4 8 8 C 1.50704 * 119.99354 * 179.71510 * 6 5 4 9 9 C 1.53003 * 109.46585 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46850 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.47280 * 180.02562 * 10 9 8 12 12 C 1.35762 * 119.62393 * 270.02606 * 11 10 9 13 13 C 1.35354 * 120.70391 * 179.97438 * 12 11 10 14 14 C 1.40197 * 119.94549 * 0.02562 * 13 12 11 15 15 C 1.36396 * 119.26396 * 359.70178 * 14 13 12 16 16 C 1.34662 * 119.62692 * 89.99736 * 11 10 9 17 17 O 1.22063 * 119.98236 * 0.02562 * 16 11 10 18 18 C 1.47018 * 108.70197 * 335.55292 * 5 4 2 19 19 C 1.54324 * 107.27342 * 1.28556 * 18 5 4 20 20 H 1.09000 * 110.72065 * 140.73318 * 19 18 5 21 21 N 1.46497 * 110.72336 * 263.83276 * 19 18 5 22 22 C 1.36946 * 119.99596 * 273.54490 * 21 19 18 23 23 H 1.07994 * 119.99761 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99681 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00019 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00182 * 0.02562 * 24 22 21 27 27 H 1.48508 * 109.47485 * 89.99804 * 26 24 22 28 28 H 1.48501 * 109.47462 * 209.99432 * 26 24 22 29 29 H 1.48500 * 109.47424 * 329.99857 * 26 24 22 30 30 H 1.09000 * 109.46715 * 296.09348 * 1 2 3 31 31 H 1.08993 * 109.47031 * 56.09621 * 1 2 3 32 32 H 1.09002 * 109.47000 * 176.09717 * 1 2 3 33 33 H 1.08999 * 109.47120 * 183.89542 * 3 2 1 34 34 H 1.08993 * 109.47342 * 303.90824 * 3 2 1 35 35 H 1.09008 * 109.47041 * 63.90341 * 3 2 1 36 36 H 1.09005 * 110.49634 * 160.34916 * 4 2 1 37 37 H 1.08996 * 110.34044 * 37.95467 * 4 2 1 38 38 H 1.09001 * 109.47305 * 60.00450 * 8 6 5 39 39 H 1.08995 * 109.47209 * 299.99926 * 8 6 5 40 40 H 1.08997 * 109.46986 * 60.00728 * 9 8 6 41 41 H 1.08995 * 109.47326 * 299.99902 * 9 8 6 42 42 H 1.09001 * 109.47187 * 60.00407 * 10 9 8 43 43 H 1.09000 * 109.47502 * 300.00202 * 10 9 8 44 44 H 1.07997 * 119.64966 * 359.97438 * 12 11 10 45 45 H 1.07998 * 120.02806 * 179.97438 * 13 12 11 46 46 H 1.08001 * 120.36419 * 179.97438 * 14 13 12 47 47 H 1.08004 * 120.34808 * 180.29407 * 15 14 13 48 48 H 1.09005 * 109.88467 * 120.70277 * 18 5 4 49 49 H 1.08996 * 109.88266 * 241.71628 * 18 5 4 50 50 H 0.96998 * 120.00511 * 93.54077 * 21 19 18 51 51 H 0.96998 * 119.99940 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0908 -0.8069 -1.2004 5 7 2.0139 -2.2159 -0.7734 6 6 1.9471 -3.2828 -1.5942 7 8 1.9420 -3.1236 -2.7964 8 6 1.8788 -4.6736 -1.0179 9 6 1.8102 -5.6942 -2.1557 10 6 1.7403 -7.1062 -1.5706 11 7 1.6752 -8.0836 -2.6600 12 6 0.4671 -8.4671 -3.1462 13 6 0.3815 -9.3681 -4.1526 14 6 1.5490 -9.9156 -4.7030 15 6 2.7620 -9.5248 -4.2169 16 6 2.8145 -8.5909 -3.1681 17 8 3.8932 -8.2362 -2.7203 18 6 2.0286 -2.2647 0.6959 19 6 2.0862 -0.8080 1.2022 20 1 1.4549 -0.6800 2.0815 21 7 3.4667 -0.4156 1.4961 22 6 4.0066 -0.6806 2.7265 23 1 3.4146 -1.1785 3.4800 24 6 5.3148 -0.3093 3.0048 25 7 5.8337 -0.5636 4.1875 26 14 6.3386 0.5524 1.7015 27 1 6.1586 2.0216 1.8219 28 1 7.7714 0.2121 1.8924 29 1 5.8998 0.1088 0.3539 30 1 -0.3633 0.4520 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1637 1.4025 -0.0698 34 1 1.6705 1.9732 -0.8528 35 1 1.7836 1.9300 0.9230 36 1 3.1253 -0.5266 -1.3988 37 1 1.4764 -0.6448 -2.0860 38 1 0.9897 -4.7652 -0.3941 39 1 2.7670 -4.8608 -0.4144 40 1 2.6992 -5.6028 -2.7798 41 1 0.9219 -5.5069 -2.7588 42 1 0.8512 -7.1974 -0.9467 43 1 2.6284 -7.2939 -0.9672 44 1 -0.4353 -8.0487 -2.7256 45 1 -0.5853 -9.6657 -4.5308 46 1 1.4886 -10.6353 -5.5059 47 1 3.6727 -9.9317 -4.6312 48 1 1.1218 -2.7480 1.0599 49 1 2.9049 -2.8140 1.0398 50 1 3.9984 0.0318 0.8194 51 1 6.7477 -0.3038 4.3821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571562807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:57 Heat of formation + Delta-G solvation = -24.033772 kcal Electronic energy + Delta-G solvation = -30697.900343 eV Core-core repulsion = 26598.011380 eV Total energy + Delta-G solvation = -4099.888963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.57738 -40.16055 -38.21797 -37.11110 -35.74700 -34.09469 -33.40193 -32.81540 -31.13491 -30.14705 -28.33238 -28.19049 -26.94971 -25.99049 -24.22739 -23.74946 -23.19262 -21.85715 -21.37705 -19.22332 -18.87524 -17.80655 -17.63764 -17.56051 -16.75312 -16.55628 -16.15884 -15.76491 -15.47659 -15.07410 -14.62339 -14.58147 -14.48163 -14.35535 -13.87344 -13.61906 -13.08254 -13.04212 -12.83448 -12.63767 -12.56134 -12.37143 -12.23155 -12.16121 -12.11229 -12.03713 -11.80956 -11.75733 -11.67273 -11.32424 -11.02500 -10.99884 -10.69955 -10.58430 -10.40031 -10.32025 -10.13477 -9.97420 -9.71274 -9.64023 -9.06247 -8.36076 -8.25174 -7.41027 -5.87284 -3.24438 0.54030 1.60254 2.34486 2.79701 3.20476 3.31456 3.34368 3.40735 3.41278 4.21698 4.31451 4.43181 4.50429 4.56164 4.69291 4.75054 4.81417 4.91367 4.93063 4.96679 5.01173 5.09700 5.19207 5.23138 5.28700 5.44726 5.47138 5.50866 5.60294 5.67212 5.75790 5.77160 5.79857 5.83784 5.91293 5.96727 5.99944 6.03184 6.05247 6.09872 6.18379 6.21687 6.23880 6.40727 6.50553 6.62201 6.63596 6.81905 7.77257 7.82261 7.86968 8.31511 8.33472 9.08461 9.81156 9.99426 11.30377 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013246 B = 0.002385 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.351873 B =11738.893902 C =12947.300876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.128 4.128 4 C 0.118 3.882 5 N -0.607 5.607 6 C 0.527 3.473 7 O -0.556 6.556 8 C -0.133 4.133 9 C -0.115 4.115 10 C 0.088 3.912 11 N -0.494 5.494 12 C 0.137 3.863 13 C -0.239 4.239 14 C -0.018 4.018 15 C -0.245 4.245 16 C 0.510 3.490 17 O -0.547 6.547 18 C 0.071 3.929 19 C 0.185 3.815 20 H 0.079 0.921 21 N -0.737 5.737 22 C -0.250 4.250 23 H 0.093 0.907 24 C 0.011 3.989 25 N -0.929 5.929 26 Si 0.879 3.121 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.161 0.839 45 H 0.144 0.856 46 H 0.133 0.867 47 H 0.147 0.853 48 H 0.059 0.941 49 H 0.080 0.920 50 H 0.364 0.636 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.256 -13.412 -14.161 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.316 3.684 7 O -0.435 6.435 8 C -0.173 4.173 9 C -0.154 4.154 10 C -0.034 4.034 11 N -0.204 5.204 12 C 0.010 3.990 13 C -0.262 4.262 14 C -0.040 4.040 15 C -0.267 4.267 16 C 0.312 3.688 17 O -0.429 6.429 18 C -0.055 4.055 19 C 0.073 3.927 20 H 0.097 0.903 21 N -0.380 5.380 22 C -0.380 4.380 23 H 0.110 0.890 24 C -0.185 4.185 25 N -0.575 5.575 26 Si 0.709 3.291 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.179 0.821 45 H 0.161 0.839 46 H 0.151 0.849 47 H 0.164 0.836 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.198 0.802 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.463 -13.201 -14.232 25.453 hybrid contribution 0.876 0.479 -0.833 1.300 sum -15.587 -12.722 -15.065 25.135 Atomic orbital electron populations 1.21654 0.93500 1.01620 1.01772 1.22084 0.95740 0.95853 0.95645 1.21601 1.01197 0.94054 1.01683 1.22305 1.00698 0.80307 0.97098 1.48456 1.71627 1.06004 1.07898 1.20160 0.76253 0.85882 0.86127 1.90674 1.51580 1.86448 1.14770 1.21506 1.04955 0.91650 0.99183 1.21624 1.04537 0.91232 0.97999 1.22107 1.05289 0.87605 0.88361 1.45595 1.06803 1.36292 1.31678 1.21998 0.88848 0.94153 0.94030 1.20646 0.99878 1.03936 1.01775 1.21433 0.92001 0.94723 0.95857 1.22155 0.99802 1.03444 1.01267 1.17212 0.83276 0.83427 0.84922 1.91000 1.26823 1.62585 1.62450 1.23240 1.01305 1.02534 0.78410 1.21185 0.87656 0.89209 0.94649 0.90294 1.42823 1.09566 1.71158 1.14426 1.19022 0.96332 1.33292 0.89345 0.88961 1.24646 0.96927 1.00656 0.96297 1.69687 1.15328 1.51908 1.20611 0.86655 0.80539 0.80056 0.81886 1.20858 1.21603 1.20365 0.92063 0.92746 0.92729 0.92291 0.93155 0.91558 0.91748 0.91020 0.88738 0.88208 0.90198 0.90785 0.88838 0.87770 0.82131 0.83854 0.84921 0.83559 0.92293 0.90128 0.80184 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.59 37.16 0.32 -1.16 16 2 C -0.09 -1.30 0.83 -152.24 -0.13 -1.43 16 3 C -0.13 -1.81 8.22 37.16 0.31 -1.50 16 4 C 0.12 1.84 5.82 -2.41 -0.01 1.82 16 5 N -0.61 -9.43 3.31 -170.38 -0.56 -9.99 16 6 C 0.53 8.21 7.85 -10.98 -0.09 8.13 16 7 O -0.56 -10.42 16.24 5.56 0.09 -10.33 16 8 C -0.13 -1.51 4.89 -27.88 -0.14 -1.65 16 9 C -0.12 -1.28 4.83 -26.73 -0.13 -1.41 16 10 C 0.09 0.78 5.33 -4.04 -0.02 0.76 16 11 N -0.49 -4.76 2.58 -119.77 -0.31 -5.07 16 12 C 0.14 0.86 10.28 -16.84 -0.17 0.69 16 13 C -0.24 -1.35 10.01 -39.87 -0.40 -1.75 16 14 C -0.02 -0.12 10.10 -39.51 -0.40 -0.52 16 15 C -0.24 -2.43 9.99 -39.38 -0.39 -2.82 16 16 C 0.51 6.53 7.41 -15.45 -0.11 6.42 16 17 O -0.55 -9.36 16.64 4.86 0.08 -9.28 16 18 C 0.07 1.09 5.90 -3.07 -0.02 1.07 16 19 C 0.18 3.12 2.86 -66.10 -0.19 2.93 16 20 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 21 N -0.74 -15.87 4.42 -51.65 -0.23 -16.09 16 22 C -0.25 -6.53 10.46 -15.06 -0.16 -6.69 16 23 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 24 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 25 N -0.93 -28.11 13.97 55.49 0.78 -27.34 16 26 Si 0.88 21.58 27.74 -169.99 -4.71 16.87 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.62 7.91 -51.93 -0.41 0.21 16 33 H 0.06 0.94 6.37 -51.93 -0.33 0.61 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.06 1.10 7.99 -51.93 -0.41 0.69 16 37 H 0.07 1.08 7.95 -51.93 -0.41 0.66 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.09 0.50 8.01 -51.93 -0.42 0.09 16 43 H 0.10 1.10 7.39 -51.93 -0.38 0.72 16 44 H 0.16 0.45 8.04 -52.49 -0.42 0.03 16 45 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 46 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 47 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.41 8.05 -51.93 -0.42 1.00 16 50 H 0.36 7.96 3.96 -40.82 -0.16 7.80 16 51 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 411.93 15.07 6.21 6.21 Total: -1.00 -35.75 411.93 -8.94 -44.69 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.45 Total: 7.24 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.83 Total: 3.10 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.33 Total: -58.49 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.17 Total: -19.61 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.75 -8.94 -44.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571562807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.653 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds