Wall clock time and date at job start Wed Apr 1 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.91545 * 2 1 4 4 C 1.55128 * 111.19191 * 236.09051 * 2 1 3 5 5 N 1.47427 * 104.72337 * 279.19153 * 4 2 1 6 6 C 1.34777 * 125.64493 * 155.81611 * 5 4 2 7 7 O 1.21273 * 120.00231 * 359.71867 * 6 5 4 8 8 C 1.50704 * 119.99354 * 179.71510 * 6 5 4 9 9 C 1.53003 * 109.46585 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46850 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.47280 * 180.02562 * 10 9 8 12 12 C 1.35762 * 119.62393 * 270.02606 * 11 10 9 13 13 C 1.35354 * 120.70391 * 179.97438 * 12 11 10 14 14 C 1.40197 * 119.94549 * 0.02562 * 13 12 11 15 15 C 1.36396 * 119.26396 * 359.70178 * 14 13 12 16 16 C 1.34662 * 119.62692 * 89.99736 * 11 10 9 17 17 O 1.22063 * 119.98236 * 0.02562 * 16 11 10 18 18 C 1.47018 * 108.70197 * 335.55292 * 5 4 2 19 19 C 1.54324 * 107.27342 * 1.28556 * 18 5 4 20 20 H 1.09000 * 110.72065 * 140.73318 * 19 18 5 21 21 N 1.46497 * 110.72336 * 263.83276 * 19 18 5 22 22 C 1.36946 * 119.99596 * 273.54490 * 21 19 18 23 23 H 1.07994 * 119.99761 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99681 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00019 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00182 * 0.02562 * 24 22 21 27 27 H 1.48508 * 109.47485 * 89.99804 * 26 24 22 28 28 H 1.48501 * 109.47462 * 209.99432 * 26 24 22 29 29 H 1.48500 * 109.47424 * 329.99857 * 26 24 22 30 30 H 1.09000 * 109.46715 * 296.09348 * 1 2 3 31 31 H 1.08993 * 109.47031 * 56.09621 * 1 2 3 32 32 H 1.09002 * 109.47000 * 176.09717 * 1 2 3 33 33 H 1.08999 * 109.47120 * 183.89542 * 3 2 1 34 34 H 1.08993 * 109.47342 * 303.90824 * 3 2 1 35 35 H 1.09008 * 109.47041 * 63.90341 * 3 2 1 36 36 H 1.09005 * 110.49634 * 160.34916 * 4 2 1 37 37 H 1.08996 * 110.34044 * 37.95467 * 4 2 1 38 38 H 1.09001 * 109.47305 * 60.00450 * 8 6 5 39 39 H 1.08995 * 109.47209 * 299.99926 * 8 6 5 40 40 H 1.08997 * 109.46986 * 60.00728 * 9 8 6 41 41 H 1.08995 * 109.47326 * 299.99902 * 9 8 6 42 42 H 1.09001 * 109.47187 * 60.00407 * 10 9 8 43 43 H 1.09000 * 109.47502 * 300.00202 * 10 9 8 44 44 H 1.07997 * 119.64966 * 359.97438 * 12 11 10 45 45 H 1.07998 * 120.02806 * 179.97438 * 13 12 11 46 46 H 1.08001 * 120.36419 * 179.97438 * 14 13 12 47 47 H 1.08004 * 120.34808 * 180.29407 * 15 14 13 48 48 H 1.09005 * 109.88467 * 120.70277 * 18 5 4 49 49 H 1.08996 * 109.88266 * 241.71628 * 18 5 4 50 50 H 0.96998 * 120.00511 * 93.54077 * 21 19 18 51 51 H 0.96998 * 119.99940 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0908 -0.8069 -1.2004 5 7 2.0139 -2.2159 -0.7734 6 6 1.9471 -3.2828 -1.5942 7 8 1.9420 -3.1236 -2.7964 8 6 1.8788 -4.6736 -1.0179 9 6 1.8102 -5.6942 -2.1557 10 6 1.7403 -7.1062 -1.5706 11 7 1.6752 -8.0836 -2.6600 12 6 0.4671 -8.4671 -3.1462 13 6 0.3815 -9.3681 -4.1526 14 6 1.5490 -9.9156 -4.7030 15 6 2.7620 -9.5248 -4.2169 16 6 2.8145 -8.5909 -3.1681 17 8 3.8932 -8.2362 -2.7203 18 6 2.0286 -2.2647 0.6959 19 6 2.0862 -0.8080 1.2022 20 1 1.4549 -0.6800 2.0815 21 7 3.4667 -0.4156 1.4961 22 6 4.0066 -0.6806 2.7265 23 1 3.4146 -1.1785 3.4800 24 6 5.3148 -0.3093 3.0048 25 7 5.8337 -0.5636 4.1875 26 14 6.3386 0.5524 1.7015 27 1 6.1586 2.0216 1.8219 28 1 7.7714 0.2121 1.8924 29 1 5.8998 0.1088 0.3539 30 1 -0.3633 0.4520 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1637 1.4025 -0.0698 34 1 1.6705 1.9732 -0.8528 35 1 1.7836 1.9300 0.9230 36 1 3.1253 -0.5266 -1.3988 37 1 1.4764 -0.6448 -2.0860 38 1 0.9897 -4.7652 -0.3941 39 1 2.7670 -4.8608 -0.4144 40 1 2.6992 -5.6028 -2.7798 41 1 0.9219 -5.5069 -2.7588 42 1 0.8512 -7.1974 -0.9467 43 1 2.6284 -7.2939 -0.9672 44 1 -0.4353 -8.0487 -2.7256 45 1 -0.5853 -9.6657 -4.5308 46 1 1.4886 -10.6353 -5.5059 47 1 3.6727 -9.9317 -4.6312 48 1 1.1218 -2.7480 1.0599 49 1 2.9049 -2.8140 1.0398 50 1 3.9984 0.0318 0.8194 51 1 6.7477 -0.3038 4.3821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571562807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:56 Heat of formation + Delta-G solvation = -47.477354 kcal Electronic energy + Delta-G solvation = -30698.916933 eV Core-core repulsion = 26598.011380 eV Total energy + Delta-G solvation = -4100.905553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31469 -41.41559 -39.49654 -37.98066 -36.50920 -35.83531 -34.67808 -33.70149 -33.02632 -30.79560 -29.74289 -29.13716 -28.09418 -27.02933 -25.49233 -24.81328 -24.09239 -22.98695 -22.52036 -20.62808 -20.10085 -19.38077 -18.56634 -18.28083 -17.86741 -17.43716 -17.21826 -16.79225 -16.61192 -16.31700 -16.06279 -15.82825 -15.41977 -15.22894 -15.06979 -14.83818 -14.51071 -14.37484 -13.94508 -13.84367 -13.67198 -13.43275 -13.29323 -13.17803 -13.07502 -12.96862 -12.88405 -12.81409 -12.76024 -12.66210 -12.56928 -12.28271 -11.97121 -11.88061 -11.84368 -11.60807 -11.31626 -11.14050 -11.03359 -11.00087 -10.87585 -9.67021 -9.32261 -8.95720 -8.03018 -5.34735 -0.05709 0.93692 1.33427 1.35156 1.40983 1.56926 1.64469 2.05435 2.45035 2.70044 3.27445 3.30118 3.52365 3.64042 3.65876 3.76696 3.78786 3.93865 3.96292 3.98705 4.13005 4.23261 4.26808 4.28571 4.41464 4.43469 4.45565 4.54896 4.57600 4.60902 4.63342 4.73798 4.86739 4.91433 4.95298 4.99789 5.05332 5.07589 5.08185 5.14612 5.22492 5.25143 5.30616 5.38510 5.41345 5.50229 5.69711 5.79837 6.12251 6.21902 6.53661 7.00499 7.06757 7.10631 7.83876 8.00196 9.18047 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013246 B = 0.002385 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.351873 B =11738.893902 C =12947.300876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 C -0.129 4.129 4 C 0.115 3.885 5 N -0.608 5.608 6 C 0.520 3.480 7 O -0.592 6.592 8 C -0.125 4.125 9 C -0.103 4.103 10 C 0.090 3.910 11 N -0.494 5.494 12 C 0.133 3.867 13 C -0.235 4.235 14 C 0.007 3.993 15 C -0.290 4.290 16 C 0.488 3.512 17 O -0.617 6.617 18 C 0.080 3.920 19 C 0.171 3.829 20 H 0.086 0.914 21 N -0.742 5.742 22 C -0.217 4.217 23 H 0.073 0.927 24 C -0.056 4.056 25 N -0.979 5.979 26 Si 0.935 3.065 27 H -0.275 1.275 28 H -0.303 1.303 29 H -0.266 1.266 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.031 0.969 41 H 0.083 0.917 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.207 0.793 45 H 0.184 0.816 46 H 0.166 0.834 47 H 0.138 0.862 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.362 0.638 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 -14.068 -15.563 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.186 4.186 4 C -0.008 4.008 5 N -0.340 5.340 6 C 0.311 3.689 7 O -0.474 6.474 8 C -0.165 4.165 9 C -0.142 4.142 10 C -0.031 4.031 11 N -0.202 5.202 12 C 0.007 3.993 13 C -0.257 4.257 14 C -0.015 4.015 15 C -0.312 4.312 16 C 0.293 3.707 17 O -0.506 6.506 18 C -0.045 4.045 19 C 0.062 3.938 20 H 0.104 0.896 21 N -0.385 5.385 22 C -0.348 4.348 23 H 0.091 0.909 24 C -0.248 4.248 25 N -0.630 5.630 26 Si 0.765 3.235 27 H -0.201 1.201 28 H -0.230 1.230 29 H -0.192 1.192 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.113 0.887 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.162 0.838 43 H 0.098 0.902 44 H 0.224 0.776 45 H 0.201 0.799 46 H 0.183 0.817 47 H 0.156 0.844 48 H 0.117 0.883 49 H 0.074 0.926 50 H 0.197 0.803 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.391 -13.866 -15.680 29.929 hybrid contribution 2.151 0.624 -0.479 2.290 sum -19.240 -13.242 -16.159 28.402 Atomic orbital electron populations 1.21625 0.90679 1.02502 1.03074 1.22045 0.97690 0.95069 0.93075 1.21615 0.99813 0.94405 1.02795 1.22322 0.99622 0.80756 0.98095 1.48547 1.71373 1.06142 1.07949 1.20889 0.75176 0.87151 0.85700 1.90656 1.53207 1.87088 1.16409 1.21547 1.06656 0.88901 0.99407 1.21477 1.02614 0.92674 0.97459 1.22149 1.06570 0.86049 0.88300 1.45617 1.07306 1.35789 1.31516 1.22863 0.88621 0.93882 0.93938 1.21223 1.00956 1.02679 1.00797 1.21884 0.91020 0.93463 0.95099 1.22106 1.01335 1.05249 1.02513 1.17713 0.83370 0.84060 0.85571 1.90940 1.29266 1.65396 1.64969 1.23047 1.02153 1.01049 0.78249 1.21505 0.85253 0.90757 0.96298 0.89597 1.42869 1.11537 1.71312 1.12770 1.19043 0.95558 1.29945 0.90211 0.90950 1.25281 0.98556 1.02955 0.98034 1.69834 1.15495 1.54841 1.22803 0.85711 0.78250 0.79377 0.80177 1.20084 1.22985 1.19154 0.90995 0.91216 0.92110 0.94605 0.90617 0.91646 0.94102 0.90321 0.84444 0.88741 0.94993 0.89790 0.83777 0.90232 0.77609 0.79863 0.81665 0.84403 0.88310 0.92617 0.80344 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.59 71.98 0.62 -1.70 16 2 C -0.08 -2.01 0.83 -50.71 -0.04 -2.05 16 3 C -0.13 -3.39 8.22 71.98 0.59 -2.79 16 4 C 0.11 3.40 5.82 86.93 0.51 3.91 16 5 N -0.61 -17.90 3.31 -811.36 -2.69 -20.59 16 6 C 0.52 15.61 7.85 87.66 0.69 16.30 16 7 O -0.59 -22.07 16.24 -3.01 -0.05 -22.11 16 8 C -0.13 -2.64 4.89 29.85 0.15 -2.49 16 9 C -0.10 -2.21 4.83 30.60 0.15 -2.07 16 10 C 0.09 1.49 5.33 86.38 0.46 1.95 16 11 N -0.49 -9.00 2.58 -650.97 -1.68 -10.68 16 12 C 0.13 1.15 10.28 83.42 0.86 2.01 16 13 C -0.23 -1.62 10.01 22.08 0.22 -1.40 16 14 C 0.01 0.08 10.10 22.32 0.23 0.30 16 15 C -0.29 -6.00 9.99 22.40 0.22 -5.77 16 16 C 0.49 13.29 7.41 84.82 0.63 13.92 16 17 O -0.62 -23.54 16.64 -5.52 -0.09 -23.63 16 18 C 0.08 2.29 5.90 86.73 0.51 2.80 16 19 C 0.17 5.47 2.86 46.18 0.13 5.60 16 20 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 21 N -0.74 -31.55 4.42 -317.33 -1.40 -32.95 16 22 C -0.22 -11.38 10.46 84.03 0.88 -10.50 16 23 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 24 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 25 N -0.98 -61.12 13.97 21.65 0.30 -60.82 16 26 Si 0.94 45.61 27.74 68.60 1.90 47.51 16 27 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 29 H -0.27 -12.24 6.52 99.48 0.65 -11.59 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.11 7.91 -2.39 -0.02 1.09 16 33 H 0.03 1.10 6.37 -2.39 -0.02 1.09 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.04 1.39 7.99 -2.38 -0.02 1.37 16 37 H 0.08 2.23 7.95 -2.39 -0.02 2.21 16 38 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 41 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 42 H 0.14 0.90 8.01 -2.39 -0.02 0.88 16 43 H 0.08 1.75 7.39 -2.39 -0.02 1.73 16 44 H 0.21 -0.16 8.04 -2.91 -0.02 -0.18 16 45 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 46 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 47 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 48 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 49 H 0.06 1.90 8.05 -2.39 -0.02 1.88 16 50 H 0.36 15.70 3.96 -92.71 -0.37 15.33 16 51 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -86.20 411.93 4.04 -82.16 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.49 Total: 25.86 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 7.26 Total: 15.25 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.47 Total: -125.04 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -0.14 Total: -45.74 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -86.20 4.04 -82.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571562807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.686 kcal (2) G-P(sol) polarization free energy of solvation -86.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds