Wall clock time and date at job start Wed Apr 1 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30174 * 126.80569 * 2 1 4 4 O 1.20919 * 111.60936 * 180.25516 * 3 2 1 5 5 C 1.34044 * 111.56425 * 359.74966 * 4 3 2 6 6 C 1.50704 * 126.77824 * 179.97438 * 5 4 3 7 7 C 1.35444 * 106.44944 * 359.97438 * 5 4 3 8 8 C 1.50704 * 128.01250 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46984 * 273.29133 * 8 7 5 10 10 C 1.53003 * 109.47227 * 153.28884 * 8 7 5 11 11 C 1.50702 * 109.46749 * 33.28617 * 8 7 5 12 12 O 1.21275 * 120.00193 * 236.19635 * 11 8 7 13 13 N 1.34774 * 119.99664 * 56.20329 * 11 8 7 14 14 C 1.47390 * 135.85780 * 4.34522 * 13 11 8 15 15 C 1.52074 * 87.41378 * 154.38597 * 14 13 11 16 16 C 1.47399 * 135.84939 * 184.71083 * 13 11 8 17 17 C 1.53519 * 117.21204 * 267.27777 * 15 14 13 18 18 C 1.54630 * 102.70285 * 262.92934 * 17 15 14 19 19 N 1.47147 * 107.37742 * 339.38970 * 18 17 15 20 20 C 1.36933 * 125.57847 * 179.12801 * 19 18 17 21 21 H 1.08007 * 120.00071 * 185.84419 * 20 19 18 22 22 C 1.38813 * 120.00303 * 5.83409 * 20 19 18 23 23 N 1.31617 * 119.99848 * 6.46309 * 22 20 19 24 24 Si 1.86796 * 120.00151 * 186.45605 * 22 20 19 25 25 H 1.48503 * 109.47107 * 94.99773 * 24 22 20 26 26 H 1.48500 * 109.47274 * 214.99536 * 24 22 20 27 27 H 1.48498 * 109.47243 * 334.99410 * 24 22 20 28 28 C 1.47756 * 108.84003 * 359.08078 * 19 18 17 29 29 H 1.09004 * 109.46644 * 263.13348 * 1 2 3 30 30 H 1.08997 * 109.46854 * 23.13392 * 1 2 3 31 31 H 1.09000 * 109.47366 * 143.13839 * 1 2 3 32 32 H 1.08998 * 109.47168 * 267.22233 * 6 5 4 33 33 H 1.09002 * 109.46817 * 27.21552 * 6 5 4 34 34 H 1.08992 * 109.46982 * 147.21436 * 6 5 4 35 35 H 1.09002 * 109.47061 * 295.32014 * 9 8 7 36 36 H 1.08993 * 109.47128 * 175.32559 * 9 8 7 37 37 H 1.09000 * 109.47337 * 55.31954 * 9 8 7 38 38 H 1.08998 * 109.46595 * 195.32255 * 10 8 7 39 39 H 1.08996 * 109.46959 * 315.32193 * 10 8 7 40 40 H 1.08996 * 109.46754 * 75.32837 * 10 8 7 41 41 H 1.09000 * 113.54287 * 269.00059 * 14 13 11 42 42 H 1.08999 * 113.54220 * 39.67469 * 14 13 11 43 43 H 1.08997 * 113.54383 * 320.32353 * 16 13 11 44 44 H 1.08996 * 113.54083 * 90.93711 * 16 13 11 45 45 H 1.09000 * 110.76080 * 21.23377 * 17 15 14 46 46 H 1.09000 * 110.76049 * 144.62888 * 17 15 14 47 47 H 1.09004 * 109.86025 * 98.83521 * 18 17 15 48 48 H 1.09001 * 109.86607 * 219.80231 * 18 17 15 49 49 H 0.97003 * 120.00622 * 179.97438 * 23 22 20 50 50 H 1.08998 * 110.40759 * 263.50811 * 28 19 18 51 51 H 1.09004 * 110.40342 * 141.08126 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6069 -0.0036 6 6 4.9021 -1.3697 -0.0091 7 6 2.3540 -1.1321 0.0036 8 6 1.9590 -2.5865 0.0075 9 6 1.8976 -3.1020 -1.4318 10 6 0.5853 -2.7401 0.6634 11 6 2.9777 -3.3815 0.7828 12 8 3.5439 -4.3170 0.2583 13 7 3.2595 -3.0531 2.0592 14 6 2.7490 -2.0756 3.0371 15 6 3.2330 -3.0179 4.1282 16 6 4.2166 -3.5107 3.0824 17 6 2.2241 -4.0391 4.6722 18 6 1.6960 -3.3476 5.9505 19 7 2.6892 -2.3363 6.3453 20 6 2.5854 -1.4949 7.4206 21 1 3.3232 -0.7213 7.5743 22 6 1.5316 -1.6360 8.3132 23 7 0.7052 -2.6542 8.2000 24 14 1.2866 -0.3812 9.6750 25 1 0.3089 0.6452 9.2323 26 1 0.7724 -1.0630 10.8899 27 1 2.5836 0.2720 9.9855 28 6 3.8175 -2.3780 5.3922 29 1 -0.3633 -0.1229 1.0204 30 1 -0.3633 0.9450 -0.4037 31 1 -0.3634 -0.8222 -0.6165 32 1 5.1850 -1.5982 -1.0367 33 1 5.6804 -0.7646 0.4559 34 1 4.7810 -2.2977 0.5494 35 1 1.1037 -2.5839 -1.9697 36 1 1.6935 -4.1726 -1.4258 37 1 2.8517 -2.9167 -1.9252 38 1 0.4173 -3.7877 0.9135 39 1 0.5471 -2.1390 1.5718 40 1 -0.1871 -2.4034 -0.0280 41 1 3.2787 -1.1231 3.0178 42 1 1.6657 -1.9579 3.0102 43 1 4.3587 -4.5913 3.0934 44 1 5.1577 -2.9610 3.0751 45 1 1.4161 -4.2017 3.9589 46 1 2.7194 -4.9786 4.9175 47 1 0.7399 -2.8668 5.7434 48 1 1.5761 -4.0825 6.7466 49 1 -0.0309 -2.7531 8.8239 50 1 4.6274 -2.9905 5.7885 51 1 4.1720 -1.3696 5.1785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686308571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:25 Heat of formation + Delta-G solvation = 77.974986 kcal Electronic energy + Delta-G solvation = -33108.703283 eV Core-core repulsion = 29013.237752 eV Total energy + Delta-G solvation = -4095.465531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.00076 -42.16821 -40.18368 -37.46987 -37.28336 -34.83409 -34.06801 -33.58231 -31.28024 -30.30898 -29.99032 -28.64864 -28.11016 -27.48383 -27.07150 -25.68754 -24.55127 -22.80281 -22.12391 -21.38603 -20.07327 -19.61826 -18.73473 -18.56811 -18.20154 -17.41363 -17.16832 -16.88611 -16.68254 -15.99689 -15.84557 -15.63161 -15.01781 -14.82085 -14.63215 -14.33559 -14.23856 -14.16964 -14.10114 -13.80243 -13.71060 -13.63482 -13.54826 -13.40144 -13.29495 -13.03121 -12.83028 -12.80078 -12.72386 -12.45982 -12.29230 -12.14388 -12.08680 -12.00579 -11.85632 -11.79518 -11.57932 -11.23394 -10.94427 -10.69909 -10.65064 -10.13441 -9.72899 -8.84205 -7.81033 -5.17330 0.41732 1.15343 1.47377 1.48235 1.48791 1.57579 1.74630 2.09880 2.51605 3.07484 3.20594 3.31674 3.42200 3.48585 3.54255 3.69451 3.79430 3.83840 3.94660 4.06429 4.18680 4.21365 4.32816 4.37584 4.43920 4.48727 4.51792 4.58090 4.62345 4.64801 4.68483 4.69952 4.71756 4.79398 4.83213 4.86256 4.90444 4.93059 4.99516 5.03156 5.05285 5.07758 5.17043 5.20251 5.26997 5.33890 5.48913 5.67797 5.81680 6.23409 6.64784 7.03798 7.13434 7.25803 7.81055 8.45222 9.27889 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.003471 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.094809 B = 8064.798849 C = 8719.336360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.036 3.964 3 N -0.393 5.393 4 O 0.085 5.915 5 C -0.019 4.019 6 C -0.085 4.085 7 C -0.197 4.197 8 C 0.011 3.989 9 C -0.121 4.121 10 C -0.148 4.148 11 C 0.557 3.443 12 O -0.568 6.568 13 N -0.634 5.634 14 C 0.132 3.868 15 C -0.098 4.098 16 C 0.125 3.875 17 C -0.099 4.099 18 C 0.186 3.814 19 N -0.623 5.623 20 C -0.237 4.237 21 H 0.083 0.917 22 C -0.063 4.063 23 N -0.949 5.949 24 Si 0.971 3.029 25 H -0.290 1.290 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.151 3.849 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.075 0.925 47 H -0.002 1.002 48 H 0.020 0.980 49 H 0.245 0.755 50 H 0.034 0.966 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 0.702 -20.561 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 N -0.102 5.102 4 O 0.024 5.976 5 C -0.082 4.082 6 C -0.142 4.142 7 C -0.202 4.202 8 C 0.007 3.993 9 C -0.179 4.179 10 C -0.205 4.205 11 C 0.348 3.652 12 O -0.447 6.447 13 N -0.367 5.367 14 C 0.009 3.991 15 C -0.100 4.100 16 C 0.003 3.997 17 C -0.137 4.137 18 C 0.061 3.939 19 N -0.349 5.349 20 C -0.366 4.366 21 H 0.101 0.899 22 C -0.256 4.256 23 N -0.598 5.598 24 Si 0.800 3.200 25 H -0.217 1.217 26 H -0.224 1.224 27 H -0.192 1.192 28 C 0.026 3.974 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.016 0.984 48 H 0.038 0.962 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.437 1.506 -20.892 21.226 hybrid contribution -0.444 -0.093 1.294 1.371 sum 2.993 1.413 -19.598 19.876 Atomic orbital electron populations 1.20578 0.84238 1.04871 1.04458 1.23762 0.99992 0.87572 1.00975 1.73849 0.89646 1.24811 1.21936 1.84785 1.21622 1.22847 1.68373 1.24571 0.98903 0.83531 1.01201 1.20664 0.89908 0.98504 1.05169 1.20586 0.91956 0.95844 1.11780 1.19006 0.95431 0.87356 0.97512 1.21692 1.02912 1.01781 0.91467 1.22187 0.93798 1.02967 1.01582 1.20107 0.82422 0.83572 0.79142 1.90699 1.54319 1.31098 1.68621 1.49744 1.38221 1.38105 1.10653 1.22773 1.00434 0.92784 0.83078 1.21996 0.97462 0.97144 0.93377 1.22818 0.93570 1.01749 0.81574 1.22229 0.97757 0.97146 0.96545 1.20960 0.90387 0.90155 0.92427 1.44801 1.19407 1.41353 1.29375 1.19436 1.08445 1.08184 1.00529 0.89938 1.25550 0.98682 0.99992 1.01376 1.70166 1.18929 1.31144 1.39595 0.85168 0.78011 0.78292 0.78551 1.21741 1.22393 1.19203 1.21297 0.90226 0.98233 0.87687 0.89414 0.90237 0.87459 0.87995 0.88008 0.89676 0.89775 0.91307 0.92634 0.91770 0.92027 0.88070 0.89661 0.90743 0.89848 0.87242 0.90951 0.90684 0.98399 0.96212 0.94559 0.94824 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 8.73 71.23 0.62 -0.72 16 2 C 0.04 0.80 7.19 43.58 0.31 1.12 16 3 N -0.39 -10.43 12.07 -49.55 -0.60 -11.03 16 4 O 0.08 2.14 11.20 71.60 0.80 2.94 16 5 C -0.02 -0.40 7.36 25.04 0.18 -0.22 16 6 C -0.09 -1.48 10.01 71.24 0.71 -0.77 16 7 C -0.20 -4.22 4.00 -19.73 -0.08 -4.30 16 8 C 0.01 0.21 0.76 -53.67 -0.04 0.17 16 9 C -0.12 -2.15 7.80 71.98 0.56 -1.59 16 10 C -0.15 -2.65 6.97 71.98 0.50 -2.15 16 11 C 0.56 13.88 3.96 87.66 0.35 14.23 16 12 O -0.57 -17.19 16.42 -3.02 -0.05 -17.24 16 13 N -0.63 -15.33 2.77 -859.79 -2.38 -17.71 16 14 C 0.13 3.48 6.73 83.77 0.56 4.04 16 15 C -0.10 -2.86 1.06 -52.62 -0.06 -2.91 16 16 C 0.13 2.91 8.02 83.67 0.67 3.58 16 17 C -0.10 -3.33 6.41 31.32 0.20 -3.13 16 18 C 0.19 8.68 5.43 86.81 0.47 9.16 16 19 N -0.62 -29.99 3.41 -693.43 -2.36 -32.35 16 20 C -0.24 -12.73 10.26 84.03 0.86 -11.87 16 21 H 0.08 4.24 7.84 -2.91 -0.02 4.22 16 22 C -0.06 -3.48 5.45 84.86 0.46 -3.02 16 23 N -0.95 -55.90 10.43 21.65 0.23 -55.68 16 24 Si 0.97 44.91 29.56 68.60 2.03 46.94 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 C 0.15 5.42 6.70 86.23 0.58 6.00 16 29 H 0.09 1.38 7.83 -2.38 -0.02 1.36 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 1.18 6.04 -2.39 -0.01 1.17 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.74 4.39 -2.39 -0.01 1.73 16 35 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 36 H 0.07 1.28 7.91 -2.39 -0.02 1.27 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 39 H 0.06 1.23 5.35 -2.39 -0.01 1.22 16 40 H 0.10 1.26 5.61 -2.39 -0.01 1.25 16 41 H 0.09 2.22 8.06 -2.39 -0.02 2.20 16 42 H 0.07 2.09 6.12 -2.39 -0.01 2.07 16 43 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 44 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 46 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.00 -0.12 7.87 -2.38 -0.02 -0.14 16 48 H 0.02 1.07 7.02 -2.39 -0.02 1.05 16 49 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.05 1.73 8.00 -2.38 -0.02 1.72 16 Total: -1.00 -69.18 393.69 5.48 -63.70 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.94 Total: 12.82 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 6.88 Total: 7.61 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.12 Total: -116.77 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.75 Total: -14.31 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.18 5.48 -63.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686308571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.678 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds