Wall clock time and date at job start Wed Apr 1 2020 04:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34859 * 119.09781 * 2 1 4 4 C 1.41673 * 119.33889 * 179.74063 * 3 2 1 5 5 O 1.22086 * 121.07065 * 180.25416 * 4 3 2 6 6 C 1.47105 * 117.86144 * 0.49271 * 4 3 2 7 7 C 1.47286 * 120.87834 * 179.77974 * 6 4 3 8 8 O 1.21619 * 120.00202 * 37.34060 * 7 6 4 9 9 N 1.34781 * 119.99816 * 217.33873 * 7 6 4 10 10 C 1.46955 * 120.65266 * 5.22684 * 9 7 6 11 11 C 1.53198 * 108.88668 * 126.46345 * 10 9 7 12 12 C 1.53039 * 109.31123 * 54.55951 * 11 10 9 13 13 C 1.53046 * 109.53672 * 298.63596 * 12 11 10 14 14 H 1.09003 * 109.49778 * 181.31942 * 13 12 11 15 15 C 1.52998 * 109.49453 * 301.41157 * 13 12 11 16 16 C 1.46927 * 120.62931 * 185.04624 * 9 7 6 17 17 H 1.09001 * 109.58752 * 113.68061 * 16 9 7 18 18 C 1.53000 * 109.58611 * 353.39530 * 16 9 7 19 19 C 1.53004 * 109.46815 * 180.57703 * 18 16 9 20 20 N 1.46494 * 109.47014 * 185.24213 * 19 18 16 21 21 C 1.36937 * 120.00289 * 180.02562 * 20 19 18 22 22 H 1.08004 * 119.99620 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00204 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00122 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99913 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46943 * 59.99723 * 25 23 21 27 27 H 1.48498 * 109.47114 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47219 * 299.99890 * 25 23 21 29 29 C 1.37990 * 118.23428 * 359.51025 * 6 4 3 30 30 N 1.34339 * 120.37316 * 0.26926 * 29 6 4 31 31 H 0.97007 * 118.80827 * 179.97438 * 30 29 6 32 32 H 1.09004 * 109.47339 * 269.98033 * 1 2 3 33 33 H 1.09002 * 109.47134 * 29.98303 * 1 2 3 34 34 H 1.09005 * 109.47050 * 149.98064 * 1 2 3 35 35 H 1.08001 * 120.33060 * 359.97438 * 3 2 1 36 36 H 1.09005 * 109.59994 * 6.60648 * 10 9 7 37 37 H 1.09004 * 109.58981 * 246.31835 * 10 9 7 38 38 H 1.08999 * 109.49809 * 294.60619 * 11 10 9 39 39 H 1.09005 * 109.52392 * 174.52208 * 11 10 9 40 40 H 1.08995 * 109.46276 * 178.61433 * 12 11 10 41 41 H 1.09003 * 109.45275 * 58.64404 * 12 11 10 42 42 H 1.09000 * 109.47317 * 179.83533 * 15 13 12 43 43 H 1.09000 * 109.47766 * 299.84299 * 15 13 12 44 44 H 1.09003 * 109.47192 * 59.84016 * 15 13 12 45 45 H 1.09004 * 109.47221 * 60.58210 * 18 16 9 46 46 H 1.08996 * 109.47099 * 300.57482 * 18 16 9 47 47 H 1.09000 * 109.46620 * 65.24803 * 19 18 16 48 48 H 1.08998 * 109.47366 * 305.24529 * 19 18 16 49 49 H 0.97008 * 120.00111 * 0.02562 * 20 19 18 50 50 H 0.96995 * 120.00110 * 180.02562 * 24 23 21 51 51 H 1.07999 * 119.81347 * 180.24774 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1844 0.0056 5 8 4.2052 2.2327 0.0104 6 6 4.2725 -0.1132 0.0000 7 6 5.7436 -0.1845 0.0005 8 8 6.3913 0.6195 0.6433 9 7 6.3722 -1.1409 -0.7116 10 6 5.6119 -2.0476 -1.5830 11 6 6.2149 -2.0040 -2.9907 12 6 7.7109 -2.3167 -2.9104 13 6 8.4095 -1.2592 -2.0526 14 1 9.4784 -1.4692 -2.0150 15 6 8.1816 0.1252 -2.6628 16 6 7.8314 -1.2943 -0.6344 17 1 8.0743 -2.2473 -0.1643 18 6 8.4245 -0.1499 0.1898 19 6 9.9453 -0.3043 0.2564 20 7 10.5013 0.7173 1.1470 21 6 11.8523 0.7758 1.3628 22 1 12.5079 0.0685 0.8765 23 6 12.3791 1.7435 2.2072 24 7 11.5801 2.6051 2.8001 25 14 14.2220 1.8228 2.5019 26 1 14.9201 2.0537 1.2118 27 1 14.5265 2.9368 3.4354 28 1 14.6845 0.5411 3.0925 29 6 3.5077 -1.2618 0.0001 30 7 2.1665 -1.1847 -0.0004 31 1 1.6510 -2.0065 -0.0007 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8899 -0.5142 35 1 1.6135 2.1083 -0.0004 36 1 4.5701 -1.7294 -1.6219 37 1 5.6693 -3.0636 -1.1923 38 1 6.0733 -1.0107 -3.4166 39 1 5.7220 -2.7440 -3.6213 40 1 8.1376 -2.3106 -3.9133 41 1 7.8526 -3.2999 -2.4614 42 1 8.6769 0.8784 -2.0500 43 1 8.5931 0.1498 -3.6719 44 1 7.1124 0.3338 -2.7013 45 1 8.0122 -0.1767 1.1985 46 1 8.1762 0.8022 -0.2791 47 1 10.3666 -0.1844 -0.7417 48 1 10.1936 -1.2942 0.6391 49 1 9.9125 1.3523 1.5841 50 1 11.9483 3.2815 3.3898 51 1 3.9900 -2.2281 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691731617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:22 Heat of formation + Delta-G solvation = -39.895809 kcal Electronic energy + Delta-G solvation = -31945.510354 eV Core-core repulsion = 27844.933562 eV Total energy + Delta-G solvation = -4100.576792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.32715 -41.24822 -39.06916 -38.36937 -37.04085 -35.38544 -34.16907 -33.83628 -32.61438 -32.26735 -29.97696 -29.00693 -27.71963 -26.59429 -25.41367 -24.60165 -24.09370 -23.16184 -22.05757 -21.87224 -19.92553 -19.28468 -18.71015 -18.54460 -17.46275 -17.03592 -16.97371 -16.78846 -16.57518 -16.28189 -15.78862 -15.60685 -15.31644 -15.10130 -15.01547 -14.71396 -14.63724 -14.47948 -14.20989 -13.96535 -13.93284 -13.70061 -13.51587 -13.40538 -13.12564 -13.03393 -12.98643 -12.82067 -12.52044 -12.39875 -12.36806 -12.15928 -11.86422 -11.76675 -11.69634 -11.32139 -11.23321 -10.91450 -10.59069 -10.37871 -9.96493 -9.47419 -9.14951 -9.03589 -7.95216 -5.27404 -0.11038 0.33179 1.41544 1.48653 1.54841 1.74813 1.80613 2.08977 2.54457 2.72548 3.35792 3.35989 3.48893 3.63276 3.77127 3.80056 3.89916 3.97086 4.06954 4.12570 4.21241 4.24068 4.38402 4.40869 4.48529 4.55280 4.59316 4.70390 4.73440 4.75854 4.78615 4.79768 4.82170 4.85685 4.90998 4.98177 5.10436 5.21004 5.22348 5.24225 5.30923 5.35641 5.41215 5.44457 5.53915 5.58919 5.69357 5.80299 6.14627 6.24595 6.54834 7.09832 7.27832 7.40415 8.05380 8.30989 9.29242 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002855 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.425634 B = 9804.729045 C =11283.981984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.199 3.801 3 C -0.310 4.310 4 C 0.379 3.621 5 O -0.582 6.582 6 C -0.348 4.348 7 C 0.560 3.440 8 O -0.569 6.569 9 N -0.602 5.602 10 C 0.087 3.913 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.102 4.102 14 H 0.079 0.921 15 C -0.140 4.140 16 C 0.165 3.835 17 H 0.093 0.907 18 C -0.092 4.092 19 C 0.150 3.850 20 N -0.751 5.751 21 C -0.249 4.249 22 H 0.082 0.918 23 C -0.088 4.088 24 N -0.978 5.978 25 Si 0.987 3.013 26 H -0.274 1.274 27 H -0.295 1.295 28 H -0.270 1.270 29 C 0.218 3.782 30 N -0.546 5.546 31 H 0.452 0.548 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.019 0.981 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.022 0.978 48 H 0.024 0.976 49 H 0.366 0.634 50 H 0.251 0.749 51 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.114 -23.585 -14.861 42.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 C -0.333 4.333 4 C 0.273 3.727 5 O -0.472 6.472 6 C -0.358 4.358 7 C 0.350 3.650 8 O -0.447 6.447 9 N -0.336 5.336 10 C -0.033 4.033 11 C -0.173 4.173 12 C -0.144 4.144 13 C -0.122 4.122 14 H 0.097 0.903 15 C -0.197 4.197 16 C 0.062 3.938 17 H 0.111 0.889 18 C -0.130 4.130 19 C 0.024 3.976 20 N -0.393 5.393 21 C -0.380 4.380 22 H 0.100 0.900 23 C -0.279 4.279 24 N -0.628 5.628 25 Si 0.814 3.186 26 H -0.200 1.200 27 H -0.221 1.221 28 H -0.196 1.196 29 C 0.084 3.916 30 N -0.154 5.154 31 H 0.296 0.704 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.166 0.834 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.197 0.803 50 H 0.060 0.940 51 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -31.336 -22.702 -14.564 41.346 hybrid contribution 1.231 1.497 0.802 2.098 sum -30.105 -21.205 -13.762 39.311 Atomic orbital electron populations 1.21307 0.83755 1.06979 1.05992 1.20725 0.96808 0.84260 0.89243 1.22059 0.93753 0.99802 1.17736 1.19099 0.90634 0.87867 0.75070 1.90801 1.71998 1.36196 1.48179 1.22165 0.93501 0.96386 1.23794 1.18213 0.87371 0.80245 0.79185 1.90968 1.66832 1.41539 1.45409 1.48087 1.06865 1.33739 1.44878 1.22551 0.96329 0.94475 0.89968 1.21987 0.96044 1.02712 0.96583 1.21539 0.95190 0.97810 0.99814 1.21562 1.00656 0.95996 0.93939 0.90263 1.21793 1.00655 0.96999 1.00231 1.21160 0.79033 0.97815 0.95835 0.88902 1.21912 0.92938 0.98321 0.99862 1.20978 0.93137 0.91116 0.92389 1.42701 1.04730 1.36981 1.54854 1.19715 0.84834 1.11806 1.21660 0.90041 1.25836 1.03282 0.98281 1.00476 1.69915 1.35907 1.21435 1.35589 0.85016 0.78764 0.77196 0.77584 1.20003 1.22089 1.19609 1.22784 0.83085 0.99597 0.86142 1.40968 1.05173 1.10021 1.59220 0.70429 0.87524 0.88492 0.86552 0.83398 0.87958 0.86847 0.93384 0.86926 0.90706 0.89415 0.96191 0.91540 0.93591 0.93428 0.94066 0.96037 0.95855 0.80342 0.94042 0.76051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.37 10.03 71.24 0.71 1.08 16 2 C 0.20 1.33 6.79 41.20 0.28 1.61 16 3 C -0.31 -6.39 9.57 22.34 0.21 -6.18 16 4 C 0.38 13.10 6.94 25.45 0.18 13.27 16 5 O -0.58 -29.12 16.99 6.19 0.11 -29.01 16 6 C -0.35 -9.29 5.40 -18.63 -0.10 -9.39 16 7 C 0.56 20.03 7.20 86.62 0.62 20.65 16 8 O -0.57 -29.12 11.74 7.70 0.09 -29.03 16 9 N -0.60 -15.47 2.43 -798.93 -1.94 -17.41 16 10 C 0.09 0.97 4.85 86.36 0.42 1.39 16 11 C -0.14 -1.57 5.74 30.67 0.18 -1.40 16 12 C -0.11 -1.59 5.43 30.62 0.17 -1.42 16 13 C -0.10 -2.66 2.29 -10.72 -0.02 -2.68 16 14 H 0.08 2.18 6.88 -2.39 -0.02 2.17 16 15 C -0.14 -4.45 8.20 71.98 0.59 -3.86 16 16 C 0.17 5.01 2.72 44.97 0.12 5.13 16 17 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 18 C -0.09 -4.18 2.75 30.60 0.08 -4.09 16 19 C 0.15 7.38 5.75 86.38 0.50 7.87 16 20 N -0.75 -46.68 5.60 -343.46 -1.92 -48.61 16 21 C -0.25 -15.87 9.99 84.03 0.84 -15.03 16 22 H 0.08 4.85 7.83 -2.91 -0.02 4.82 16 23 C -0.09 -5.67 5.50 84.86 0.47 -5.20 16 24 N -0.98 -68.50 13.06 21.65 0.28 -68.22 16 25 Si 0.99 50.81 29.55 68.60 2.03 52.83 16 26 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 29 C 0.22 1.90 8.57 84.25 0.72 2.62 16 30 N -0.55 -0.53 5.16 -182.39 -0.94 -1.47 16 31 H 0.45 -4.71 8.70 -92.70 -0.81 -5.52 16 32 H 0.11 -0.46 8.14 -2.38 -0.02 -0.48 16 33 H 0.10 -0.18 8.05 -2.39 -0.02 -0.19 16 34 H 0.12 -1.13 8.12 -2.38 -0.02 -1.15 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.10 0.70 4.56 -2.38 -0.01 0.69 16 37 H 0.11 0.36 8.10 -2.39 -0.02 0.34 16 38 H 0.05 0.82 6.33 -2.39 -0.02 0.81 16 39 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.02 0.80 6.30 -2.39 -0.02 0.78 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.50 5.97 -2.39 -0.01 1.49 16 45 H 0.05 2.47 6.48 -2.38 -0.02 2.45 16 46 H 0.04 2.18 5.22 -2.39 -0.01 2.17 16 47 H 0.02 1.04 6.81 -2.39 -0.02 1.02 16 48 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.37 25.24 7.67 -92.70 -0.71 24.53 16 50 H 0.25 16.86 8.31 -92.71 -0.77 16.09 16 51 H 0.22 -0.12 6.27 -2.91 -0.02 -0.14 16 Total: -1.00 -118.78 390.23 3.13 -115.66 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.54 Total: 20.89 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 5.97 Total: 4.37 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -4.52 Total: -135.71 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: 0.20 Total: -58.04 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.03 Total: 52.83 kcal Total: -118.78 3.13 -115.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691731617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.759 kcal (2) G-P(sol) polarization free energy of solvation -118.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds