Wall clock time and date at job start Wed Apr 1 2020 05:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 113.30947 * 2 1 4 4 C 1.54516 * 113.96369 * 227.67770 * 2 1 3 5 5 H 1.08996 * 113.81441 * 94.96864 * 4 2 1 6 6 N 1.46502 * 114.83313 * 322.18170 * 4 2 1 7 7 C 1.34772 * 119.99778 * 161.36133 * 6 4 2 8 8 O 1.21281 * 120.00103 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99944 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47363 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47259 * 180.02562 * 10 9 7 12 12 C 1.41382 * 126.80410 * 125.00107 * 11 10 9 13 13 C 1.35445 * 103.98604 * 179.97438 * 12 11 10 14 14 O 1.34042 * 106.44581 * 359.97438 * 13 12 11 15 15 N 1.20926 * 111.56768 * 359.70936 * 14 13 12 16 16 C 1.49999 * 83.56718 * 208.53673 * 4 2 1 17 17 H 1.08995 * 112.50789 * 284.35031 * 16 4 2 18 18 C 1.51214 * 126.16967 * 141.95513 * 16 4 2 19 19 C 1.54093 * 106.19105 * 198.57416 * 18 16 4 20 20 C 1.52490 * 112.67536 * 55.43760 * 19 18 16 21 21 N 1.48409 * 111.87124 * 313.21482 * 20 19 18 22 22 C 1.36942 * 123.16356 * 231.83971 * 21 20 19 23 23 H 1.08001 * 119.99990 * 144.75403 * 22 21 20 24 24 C 1.38812 * 119.99981 * 324.74726 * 22 21 20 25 25 N 1.31624 * 119.99946 * 166.71065 * 24 22 21 26 26 Si 1.86796 * 120.00215 * 346.72090 * 24 22 21 27 27 H 1.48496 * 109.47606 * 86.95618 * 26 24 22 28 28 H 1.48500 * 109.47325 * 206.96362 * 26 24 22 29 29 H 1.48503 * 109.46958 * 326.95696 * 26 24 22 30 30 C 1.45379 * 113.66652 * 51.83351 * 21 20 19 31 31 H 1.09006 * 112.08716 * 59.77110 * 30 21 20 32 32 H 1.08997 * 109.46752 * 287.20778 * 1 2 3 33 33 H 1.09003 * 109.46879 * 47.20684 * 1 2 3 34 34 H 1.08999 * 109.46692 * 167.20641 * 1 2 3 35 35 H 1.09004 * 109.46837 * 181.59242 * 3 2 1 36 36 H 1.08993 * 109.47329 * 301.59163 * 3 2 1 37 37 H 1.08996 * 109.47091 * 61.59498 * 3 2 1 38 38 H 0.96999 * 120.00171 * 341.37146 * 6 4 2 39 39 H 1.08999 * 109.47204 * 300.00232 * 9 7 6 40 40 H 1.09002 * 109.47373 * 60.00235 * 9 7 6 41 41 H 1.09007 * 109.47101 * 299.99489 * 10 9 7 42 42 H 1.08995 * 109.47716 * 59.99578 * 10 9 7 43 43 H 1.07997 * 128.00486 * 359.96112 * 12 11 10 44 44 H 1.08000 * 126.77843 * 180.02562 * 13 12 11 45 45 H 1.08995 * 110.10202 * 79.40319 * 18 16 4 46 46 H 1.08998 * 110.09691 * 317.74064 * 18 16 4 47 47 H 1.08997 * 108.84294 * 294.60700 * 19 18 16 48 48 H 1.09003 * 108.83664 * 176.26150 * 19 18 16 49 49 H 1.08997 * 109.00283 * 73.82769 * 20 19 18 50 50 H 1.09004 * 109.00322 * 192.67495 * 20 19 18 51 51 H 0.96997 * 120.00245 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1355 1.4052 0.0000 4 6 2.1576 -0.9507 -1.0440 5 1 2.4153 -0.4633 -1.9842 6 7 1.4477 -2.2192 -1.2262 7 6 1.6552 -2.9540 -2.3368 8 8 2.4299 -2.5652 -3.1851 9 6 0.9246 -4.2585 -2.5245 10 6 1.3379 -4.8875 -3.8566 11 6 0.6068 -6.1918 -4.0446 12 6 -0.1974 -6.5607 -5.1474 13 6 -0.6201 -7.8105 -4.8407 14 8 -0.0845 -8.1106 -3.6492 15 7 0.5964 -7.2047 -3.2270 16 6 3.2859 -1.0157 -0.0578 17 1 3.9025 -0.1169 -0.0693 18 6 4.1033 -2.2412 0.2837 19 6 4.7829 -1.9419 1.6339 20 6 3.7853 -1.5604 2.7223 21 7 2.8028 -0.5560 2.2444 22 6 2.5433 0.6131 2.9086 23 1 2.3204 1.5119 2.3528 24 6 2.5666 0.6429 4.2962 25 7 2.5791 1.7966 4.9296 26 14 2.5803 -0.9544 5.2646 27 1 3.9807 -1.4184 5.4344 28 1 1.9681 -0.7297 6.5988 29 1 1.8029 -1.9850 4.5306 30 6 2.1420 -0.9301 1.0046 31 1 1.5931 -1.8671 1.0993 32 1 -0.3633 0.3040 0.9817 33 1 -0.3633 0.6982 -0.7541 34 1 -0.3633 -1.0022 -0.2276 35 1 3.2227 1.3323 -0.0286 36 1 1.7849 1.9519 -0.8753 37 1 1.8303 1.9323 0.9039 38 1 0.8283 -2.5302 -0.5476 39 1 1.1766 -4.9367 -1.7093 40 1 -0.1501 -4.0762 -2.5264 41 1 1.0861 -4.2095 -4.6722 42 1 2.4125 -5.0700 -3.8544 43 1 -0.4226 -5.9803 -6.0298 44 1 -1.2614 -8.4410 -5.4386 45 1 4.8567 -2.4150 -0.4846 46 1 3.4532 -3.1111 0.3762 47 1 5.4877 -1.1215 1.4990 48 1 5.3329 -2.8266 1.9548 49 1 3.2511 -2.4546 3.0433 50 1 4.3283 -1.1474 3.5725 51 1 2.5950 1.8175 5.8992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691920704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:05 Heat of formation + Delta-G solvation = 97.939594 kcal Electronic energy + Delta-G solvation = -31804.164078 eV Core-core repulsion = 27709.564277 eV Total energy + Delta-G solvation = -4094.599801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.24374 -41.40645 -39.12371 -35.74260 -35.43112 -33.43083 -32.93166 -32.40811 -31.40654 -30.78639 -29.47709 -27.21639 -26.38724 -25.62925 -24.44731 -23.46234 -22.39607 -21.41000 -20.80243 -20.35379 -19.42944 -18.20855 -18.17715 -17.82019 -16.97874 -16.81162 -15.83799 -15.50591 -15.24549 -15.09553 -14.36076 -14.27706 -14.08669 -13.86560 -13.73300 -13.62231 -13.19780 -13.08417 -12.85737 -12.71404 -12.53487 -12.48449 -12.35923 -11.91811 -11.67085 -11.52688 -11.45901 -11.27035 -11.26317 -11.16208 -10.65501 -10.48345 -10.42775 -10.38228 -10.08619 -9.99446 -9.82948 -9.74309 -9.73490 -9.52139 -8.99417 -8.74796 -8.43866 -6.70987 -5.94697 -3.40102 1.17897 1.89742 2.65800 2.94164 3.16394 3.31325 3.45961 3.48724 3.86771 4.20205 4.52041 4.60401 4.61981 4.77736 4.80935 4.84261 4.87192 5.02051 5.10835 5.17208 5.24741 5.32473 5.35489 5.46390 5.55134 5.60679 5.66336 5.69137 5.77695 5.83588 5.87502 5.90538 6.01026 6.05756 6.09435 6.25422 6.34715 6.38892 6.41885 6.46770 6.51667 6.58999 6.63566 6.74588 6.79428 6.86273 6.90363 7.13656 7.57450 7.95910 7.98761 8.26979 8.42344 8.92020 9.70992 10.22061 11.20514 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002630 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.586230 B =10643.564978 C =11228.923521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C -0.124 4.124 4 C 0.140 3.860 5 H 0.096 0.904 6 N -0.703 5.703 7 C 0.517 3.483 8 O -0.543 6.543 9 C -0.137 4.137 10 C -0.024 4.024 11 C 0.018 3.982 12 C -0.232 4.232 13 C -0.061 4.061 14 O 0.098 5.902 15 N -0.362 5.362 16 C -0.172 4.172 17 H 0.105 0.895 18 C -0.084 4.084 19 C -0.130 4.130 20 C 0.126 3.874 21 N -0.588 5.588 22 C -0.256 4.256 23 H 0.097 0.903 24 C 0.027 3.973 25 N -0.912 5.912 26 Si 0.886 3.114 27 H -0.288 1.288 28 H -0.305 1.305 29 H -0.273 1.273 30 C 0.150 3.850 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.401 0.599 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.172 0.828 44 H 0.216 0.784 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.020 0.980 50 H 0.069 0.931 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -14.809 -19.268 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.181 4.181 4 C 0.034 3.966 5 H 0.114 0.886 6 N -0.354 5.354 7 C 0.304 3.696 8 O -0.420 6.420 9 C -0.178 4.178 10 C -0.063 4.063 11 C -0.141 4.141 12 C -0.253 4.253 13 C -0.143 4.143 14 O 0.032 5.968 15 N -0.066 5.066 16 C -0.193 4.193 17 H 0.123 0.877 18 C -0.122 4.122 19 C -0.169 4.169 20 C 0.001 3.999 21 N -0.311 5.311 22 C -0.384 4.384 23 H 0.114 0.886 24 C -0.172 4.172 25 N -0.555 5.555 26 Si 0.717 3.283 27 H -0.215 1.215 28 H -0.233 1.233 29 H -0.198 1.198 30 C 0.042 3.958 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.237 0.763 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.189 0.811 44 H 0.232 0.768 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.087 0.913 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.609 -14.638 -18.456 24.215 hybrid contribution -0.600 -0.836 0.356 1.089 sum -6.209 -15.474 -18.100 24.609 Atomic orbital electron populations 1.21687 0.94662 1.00595 1.02306 1.21618 0.94778 0.95648 0.94179 1.21809 1.00906 0.93294 1.02098 1.21217 0.93108 0.84317 0.97972 0.88603 1.45724 1.45855 1.22087 1.21695 1.20436 0.82233 0.85539 0.81416 1.90695 1.36734 1.71759 1.42825 1.21612 1.01609 0.95123 0.99422 1.19719 0.99914 0.88838 0.97804 1.23736 1.00595 0.97419 0.92330 1.22800 1.03134 0.97210 1.02151 1.26043 1.01484 0.98003 0.88766 1.84860 1.46694 1.35528 1.29745 1.73872 1.12148 0.97967 1.22609 1.23414 0.97232 0.99869 0.98786 0.87709 1.20998 0.98225 0.96885 0.96065 1.21912 0.98826 1.00233 0.95954 1.21373 0.90702 0.92098 0.95701 1.44140 1.40310 1.20461 1.26153 1.19077 1.43877 0.86667 0.88741 0.88570 1.25531 0.98761 0.96084 0.96820 1.69766 1.53471 1.24028 1.08243 0.86877 0.77407 0.85113 0.78873 1.21521 1.23297 1.19790 1.21719 0.92923 0.94778 0.86336 0.93480 0.91524 0.92998 0.93485 0.91694 0.93849 0.89642 0.76338 0.88367 0.88777 0.88704 0.88955 0.81056 0.76762 0.93399 0.93111 0.92253 0.93023 0.96224 0.91311 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.21 37.16 0.34 -1.59 16 2 C -0.06 -0.98 1.36 -162.16 -0.22 -1.20 16 3 C -0.12 -2.08 8.15 37.16 0.30 -1.78 16 4 C 0.14 2.09 3.82 -72.52 -0.28 1.81 16 5 H 0.10 1.51 7.60 -51.93 -0.39 1.12 16 6 N -0.70 -8.99 4.26 -58.35 -0.25 -9.24 16 7 C 0.52 6.63 7.83 -10.99 -0.09 6.54 16 8 O -0.54 -8.74 15.65 5.56 0.09 -8.65 16 9 C -0.14 -1.33 5.67 -27.89 -0.16 -1.49 16 10 C -0.02 -0.23 5.10 -27.88 -0.14 -0.38 16 11 C 0.02 0.17 6.59 -82.10 -0.54 -0.37 16 12 C -0.23 -1.57 11.12 -39.38 -0.44 -2.01 16 13 C -0.06 -0.34 12.30 29.74 0.37 0.02 16 14 O 0.10 0.89 11.20 17.17 0.19 1.08 16 15 N -0.36 -3.98 12.06 33.42 0.40 -3.57 16 16 C -0.17 -2.90 2.98 -98.16 -0.29 -3.19 16 17 H 0.11 1.92 5.76 -51.93 -0.30 1.62 16 18 C -0.08 -1.39 5.94 -27.06 -0.16 -1.55 16 19 C -0.13 -2.31 5.90 -26.42 -0.16 -2.47 16 20 C 0.13 2.69 4.23 -3.25 -0.01 2.67 16 21 N -0.59 -13.22 2.58 -169.42 -0.44 -13.66 16 22 C -0.26 -6.72 9.75 -15.06 -0.15 -6.86 16 23 H 0.10 2.63 4.93 -52.49 -0.26 2.37 16 24 C 0.03 0.77 5.37 -17.43 -0.09 0.67 16 25 N -0.91 -27.30 13.97 55.49 0.78 -26.52 16 26 Si 0.89 22.25 24.44 -169.99 -4.16 18.10 16 27 H -0.29 -7.05 6.56 56.52 0.37 -6.68 16 28 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 29 H -0.27 -6.74 6.70 56.52 0.38 -6.36 16 30 C 0.15 2.77 2.99 -72.14 -0.22 2.56 16 31 H 0.05 0.86 6.59 -51.93 -0.34 0.52 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.58 6.38 -51.93 -0.33 0.25 16 35 H 0.06 1.14 5.81 -51.93 -0.30 0.83 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.66 5.64 -51.93 -0.29 1.37 16 38 H 0.40 4.59 6.30 -40.82 -0.26 4.33 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.09 0.99 8.10 -51.93 -0.42 0.56 16 43 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.22 0.22 8.06 -52.49 -0.42 -0.20 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.82 7.98 -51.93 -0.41 0.40 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.02 0.42 6.95 -51.93 -0.36 0.06 16 50 H 0.07 1.60 5.21 -51.93 -0.27 1.33 16 51 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -32.60 387.71 -7.25 -39.85 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.78 Total: 5.39 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.93 Total: -8.61 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.49 Total: -53.00 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.28 Total: -7.58 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.16 Total: 18.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.60 -7.25 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691920704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.788 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds