Wall clock time and date at job start Wed Apr 1 2020 05:02:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53006 * 113.30947 * 2 1
4 4 C 1.54516 * 113.96369 * 227.67770 * 2 1 3
5 5 H 1.08996 * 113.81441 * 94.96864 * 4 2 1
6 6 N 1.46502 * 114.83313 * 322.18170 * 4 2 1
7 7 C 1.34772 * 119.99778 * 161.36133 * 6 4 2
8 8 O 1.21281 * 120.00103 * 0.02562 * 7 6 4
9 9 C 1.50698 * 119.99944 * 180.02562 * 7 6 4
10 10 C 1.52997 * 109.47363 * 180.02562 * 9 7 6
11 11 C 1.50703 * 109.47259 * 180.02562 * 10 9 7
12 12 C 1.41382 * 126.80410 * 125.00107 * 11 10 9
13 13 C 1.35445 * 103.98604 * 179.97438 * 12 11 10
14 14 O 1.34042 * 106.44581 * 359.97438 * 13 12 11
15 15 N 1.20926 * 111.56768 * 359.70936 * 14 13 12
16 16 C 1.49999 * 83.56718 * 208.53673 * 4 2 1
17 17 H 1.08995 * 112.50789 * 284.35031 * 16 4 2
18 18 C 1.51214 * 126.16967 * 141.95513 * 16 4 2
19 19 C 1.54093 * 106.19105 * 198.57416 * 18 16 4
20 20 C 1.52490 * 112.67536 * 55.43760 * 19 18 16
21 21 N 1.48409 * 111.87124 * 313.21482 * 20 19 18
22 22 C 1.36942 * 123.16356 * 231.83971 * 21 20 19
23 23 H 1.08001 * 119.99990 * 144.75403 * 22 21 20
24 24 C 1.38812 * 119.99981 * 324.74726 * 22 21 20
25 25 N 1.31624 * 119.99946 * 166.71065 * 24 22 21
26 26 Si 1.86796 * 120.00215 * 346.72090 * 24 22 21
27 27 H 1.48496 * 109.47606 * 86.95618 * 26 24 22
28 28 H 1.48500 * 109.47325 * 206.96362 * 26 24 22
29 29 H 1.48503 * 109.46958 * 326.95696 * 26 24 22
30 30 C 1.45379 * 113.66652 * 51.83351 * 21 20 19
31 31 H 1.09006 * 112.08716 * 59.77110 * 30 21 20
32 32 H 1.08997 * 109.46752 * 287.20778 * 1 2 3
33 33 H 1.09003 * 109.46879 * 47.20684 * 1 2 3
34 34 H 1.08999 * 109.46692 * 167.20641 * 1 2 3
35 35 H 1.09004 * 109.46837 * 181.59242 * 3 2 1
36 36 H 1.08993 * 109.47329 * 301.59163 * 3 2 1
37 37 H 1.08996 * 109.47091 * 61.59498 * 3 2 1
38 38 H 0.96999 * 120.00171 * 341.37146 * 6 4 2
39 39 H 1.08999 * 109.47204 * 300.00232 * 9 7 6
40 40 H 1.09002 * 109.47373 * 60.00235 * 9 7 6
41 41 H 1.09007 * 109.47101 * 299.99489 * 10 9 7
42 42 H 1.08995 * 109.47716 * 59.99578 * 10 9 7
43 43 H 1.07997 * 128.00486 * 359.96112 * 12 11 10
44 44 H 1.08000 * 126.77843 * 180.02562 * 13 12 11
45 45 H 1.08995 * 110.10202 * 79.40319 * 18 16 4
46 46 H 1.08998 * 110.09691 * 317.74064 * 18 16 4
47 47 H 1.08997 * 108.84294 * 294.60700 * 19 18 16
48 48 H 1.09003 * 108.83664 * 176.26150 * 19 18 16
49 49 H 1.08997 * 109.00283 * 73.82769 * 20 19 18
50 50 H 1.09004 * 109.00322 * 192.67495 * 20 19 18
51 51 H 0.96997 * 120.00245 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1355 1.4052 0.0000
4 6 2.1576 -0.9507 -1.0440
5 1 2.4153 -0.4633 -1.9842
6 7 1.4477 -2.2192 -1.2262
7 6 1.6552 -2.9540 -2.3368
8 8 2.4299 -2.5652 -3.1851
9 6 0.9246 -4.2585 -2.5245
10 6 1.3379 -4.8875 -3.8566
11 6 0.6068 -6.1918 -4.0446
12 6 -0.1974 -6.5607 -5.1474
13 6 -0.6201 -7.8105 -4.8407
14 8 -0.0845 -8.1106 -3.6492
15 7 0.5964 -7.2047 -3.2270
16 6 3.2859 -1.0157 -0.0578
17 1 3.9025 -0.1169 -0.0693
18 6 4.1033 -2.2412 0.2837
19 6 4.7829 -1.9419 1.6339
20 6 3.7853 -1.5604 2.7223
21 7 2.8028 -0.5560 2.2444
22 6 2.5433 0.6131 2.9086
23 1 2.3204 1.5119 2.3528
24 6 2.5666 0.6429 4.2962
25 7 2.5791 1.7966 4.9296
26 14 2.5803 -0.9544 5.2646
27 1 3.9807 -1.4184 5.4344
28 1 1.9681 -0.7297 6.5988
29 1 1.8029 -1.9850 4.5306
30 6 2.1420 -0.9301 1.0046
31 1 1.5931 -1.8671 1.0993
32 1 -0.3633 0.3040 0.9817
33 1 -0.3633 0.6982 -0.7541
34 1 -0.3633 -1.0022 -0.2276
35 1 3.2227 1.3323 -0.0286
36 1 1.7849 1.9519 -0.8753
37 1 1.8303 1.9323 0.9039
38 1 0.8283 -2.5302 -0.5476
39 1 1.1766 -4.9367 -1.7093
40 1 -0.1501 -4.0762 -2.5264
41 1 1.0861 -4.2095 -4.6722
42 1 2.4125 -5.0700 -3.8544
43 1 -0.4226 -5.9803 -6.0298
44 1 -1.2614 -8.4410 -5.4386
45 1 4.8567 -2.4150 -0.4846
46 1 3.4532 -3.1111 0.3762
47 1 5.4877 -1.1215 1.4990
48 1 5.3329 -2.8266 1.9548
49 1 3.2511 -2.4546 3.0433
50 1 4.3283 -1.1474 3.5725
51 1 2.5950 1.8175 5.8992
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691920704.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:02:04
Heat of formation + Delta-G solvation = 77.430948 kcal
Electronic energy + Delta-G solvation = -31805.053400 eV
Core-core repulsion = 27709.564277 eV
Total energy + Delta-G solvation = -4095.489122 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-45.84024 -42.75061 -40.23904 -37.20145 -36.23209 -34.88700 -34.42277 -33.05709
-32.66932 -32.04817 -30.84211 -28.55332 -27.68100 -27.07919 -25.76692 -24.01646
-23.93253 -22.57459 -22.04830 -21.24944 -20.75012 -19.61259 -18.83080 -18.69351
-18.45519 -17.89284 -17.06815 -16.76551 -16.67484 -16.04716 -15.64142 -15.49938
-15.36948 -15.31553 -15.04617 -14.64087 -14.50263 -14.23636 -14.12101 -14.06576
-13.92703 -13.42671 -13.30211 -13.27335 -13.13745 -12.90045 -12.80270 -12.67967
-12.60050 -12.25753 -11.99831 -11.97054 -11.93329 -11.64596 -11.49808 -11.33694
-11.21458 -11.05172 -10.80917 -10.67802 -10.49972 -10.28992 -9.93663 -8.56053
-8.09602 -5.49901 0.68173 1.29710 1.32815 1.38921 1.47249 1.64468
2.11768 2.45041 2.54375 3.05868 3.19258 3.25077 3.46781 3.61496
3.64212 3.79573 3.83767 4.01043 4.08249 4.12064 4.22276 4.28860
4.33815 4.37138 4.42005 4.52116 4.54747 4.61824 4.65999 4.73671
4.76768 4.83167 4.87278 4.94244 4.96114 4.99785 5.04489 5.08094
5.13062 5.14708 5.17734 5.22583 5.23982 5.34173 5.41498 5.50128
5.51856 5.75394 5.97588 6.36299 6.55239 6.95479 7.25423 7.41015
7.66140 8.23308 9.09142
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015927 B = 0.002630 C = 0.002493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1757.586230 B =10643.564978 C =11228.923521
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.061 4.061
3 C -0.119 4.119
4 C 0.160 3.840
5 H 0.094 0.906
6 N -0.697 5.697
7 C 0.521 3.479
8 O -0.575 6.575
9 C -0.126 4.126
10 C -0.021 4.021
11 C 0.004 3.996
12 C -0.242 4.242
13 C -0.045 4.045
14 O 0.084 5.916
15 N -0.399 5.399
16 C -0.164 4.164
17 H 0.088 0.912
18 C -0.078 4.078
19 C -0.123 4.123
20 C 0.122 3.878
21 N -0.601 5.601
22 C -0.230 4.230
23 H 0.079 0.921
24 C -0.033 4.033
25 N -0.961 5.961
26 Si 0.940 3.060
27 H -0.281 1.281
28 H -0.317 1.317
29 H -0.264 1.264
30 C 0.133 3.867
31 H 0.061 0.939
32 H 0.043 0.957
33 H 0.067 0.933
34 H 0.070 0.930
35 H 0.052 0.948
36 H 0.068 0.932
37 H 0.052 0.948
38 H 0.410 0.590
39 H 0.100 0.900
40 H 0.116 0.884
41 H 0.101 0.899
42 H 0.075 0.925
43 H 0.195 0.805
44 H 0.260 0.740
45 H 0.057 0.943
46 H 0.060 0.940
47 H 0.051 0.949
48 H 0.076 0.924
49 H 0.024 0.976
50 H 0.044 0.956
51 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.047 -17.599 -21.955 29.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.063 4.063
3 C -0.176 4.176
4 C 0.054 3.946
5 H 0.112 0.888
6 N -0.349 5.349
7 C 0.310 3.690
8 O -0.454 6.454
9 C -0.166 4.166
10 C -0.059 4.059
11 C -0.154 4.154
12 C -0.263 4.263
13 C -0.126 4.126
14 O 0.019 5.981
15 N -0.105 5.105
16 C -0.185 4.185
17 H 0.106 0.894
18 C -0.116 4.116
19 C -0.162 4.162
20 C -0.002 4.002
21 N -0.325 5.325
22 C -0.360 4.360
23 H 0.096 0.904
24 C -0.227 4.227
25 N -0.608 5.608
26 Si 0.770 3.230
27 H -0.208 1.208
28 H -0.246 1.246
29 H -0.188 1.188
30 C 0.027 3.973
31 H 0.078 0.922
32 H 0.063 0.937
33 H 0.086 0.914
34 H 0.088 0.912
35 H 0.071 0.929
36 H 0.087 0.913
37 H 0.071 0.929
38 H 0.248 0.752
39 H 0.118 0.882
40 H 0.134 0.866
41 H 0.120 0.880
42 H 0.094 0.906
43 H 0.212 0.788
44 H 0.276 0.724
45 H 0.076 0.924
46 H 0.079 0.921
47 H 0.069 0.931
48 H 0.094 0.906
49 H 0.042 0.958
50 H 0.063 0.937
51 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -6.933 -17.486 -21.175 28.323
hybrid contribution -0.192 0.028 1.031 1.049
sum -7.124 -17.458 -20.144 27.592
Atomic orbital electron populations
1.21655 0.93052 1.02483 1.01626 1.21615 0.96077 0.94926 0.93653
1.21697 1.00224 0.94097 1.01593 1.20878 0.91873 0.84875 0.96989
0.88794 1.45654 1.45756 1.21278 1.22163 1.20909 0.81582 0.86013
0.80533 1.90690 1.38199 1.72652 1.43894 1.21567 1.02402 0.93090
0.99589 1.19641 0.99002 0.89304 0.97951 1.23884 1.01148 0.97082
0.93328 1.23146 1.02885 0.97985 1.02284 1.26893 1.00237 0.98057
0.87373 1.84807 1.46817 1.35264 1.31183 1.73870 1.13722 0.98813
1.24099 1.23339 0.96949 0.99536 0.98641 0.89427 1.20955 0.98444
0.96810 0.95350 1.21821 0.97836 1.00969 0.95609 1.21410 0.91018
0.91513 0.96307 1.44266 1.41614 1.19706 1.26915 1.19145 1.40489
0.87676 0.88641 0.90382 1.26094 1.00307 0.98304 0.98037 1.69895
1.56935 1.25917 1.08063 0.85991 0.77626 0.82255 0.77099 1.20753
1.24574 1.18823 1.22060 0.94434 0.96026 0.84800 0.92206 0.93736
0.91354 0.91152 0.92892 0.91274 0.92881 0.75243 0.88211 0.86555
0.88039 0.90632 0.78793 0.72386 0.92388 0.92146 0.93060 0.90574
0.95774 0.93746 0.93343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.48 9.21 71.98 0.66 -2.82 16
2 C -0.06 -1.89 1.36 -57.14 -0.08 -1.97 16
3 C -0.12 -4.00 8.15 71.98 0.59 -3.41 16
4 C 0.16 4.44 3.82 42.02 0.16 4.61 16
5 H 0.09 2.75 7.60 -2.39 -0.02 2.73 16
6 N -0.70 -15.80 4.26 -456.92 -1.95 -17.75 16
7 C 0.52 11.99 7.83 87.66 0.69 12.68 16
8 O -0.57 -17.36 15.65 -3.03 -0.05 -17.40 16
9 C -0.13 -2.13 5.67 29.85 0.17 -1.96 16
10 C -0.02 -0.36 5.10 29.85 0.15 -0.20 16
11 C 0.00 0.06 6.59 43.58 0.29 0.35 16
12 C -0.24 -2.57 11.12 22.40 0.25 -2.32 16
13 C -0.04 -0.36 12.30 67.17 0.83 0.47 16
14 O 0.08 1.36 11.20 71.61 0.80 2.16 16
15 N -0.40 -8.18 12.06 -49.57 -0.60 -8.78 16
16 C -0.16 -5.26 2.98 -15.68 -0.05 -5.31 16
17 H 0.09 3.17 5.76 -2.39 -0.01 3.15 16
18 C -0.08 -2.38 5.94 30.38 0.18 -2.20 16
19 C -0.12 -4.17 5.90 30.80 0.18 -3.98 16
20 C 0.12 5.07 4.23 85.84 0.36 5.44 16
21 N -0.60 -26.93 2.58 -689.92 -1.78 -28.70 16
22 C -0.23 -12.38 9.75 84.03 0.82 -11.56 16
23 H 0.08 4.46 4.93 -2.91 -0.01 4.44 16
24 C -0.03 -1.90 5.37 84.86 0.46 -1.45 16
25 N -0.96 -59.85 13.97 21.65 0.30 -59.54 16
26 Si 0.94 46.79 24.44 68.60 1.68 48.47 16
27 H -0.28 -13.45 6.56 99.48 0.65 -12.80 16
28 H -0.32 -16.22 7.11 99.48 0.71 -15.52 16
29 H -0.26 -12.52 6.70 99.48 0.67 -11.86 16
30 C 0.13 4.75 2.99 42.87 0.13 4.88 16
31 H 0.06 2.03 6.59 -2.38 -0.02 2.01 16
32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16
34 H 0.07 1.52 6.38 -2.39 -0.02 1.50 16
35 H 0.05 1.88 5.81 -2.39 -0.01 1.87 16
36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
37 H 0.05 2.14 5.64 -2.39 -0.01 2.12 16
38 H 0.41 7.96 6.30 -92.71 -0.58 7.38 16
39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
40 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16
41 H 0.10 1.59 8.09 -2.38 -0.02 1.57 16
42 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16
43 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16
44 H 0.26 -0.68 8.06 -2.91 -0.02 -0.70 16
45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
46 H 0.06 1.75 7.98 -2.39 -0.02 1.73 16
47 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16
48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16
49 H 0.02 0.99 6.95 -2.39 -0.02 0.97 16
50 H 0.04 2.05 5.21 -2.38 -0.01 2.04 16
51 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16
Total: -1.00 -73.29 387.71 4.47 -68.82
By element:
Atomic # 1 Polarization: 21.22 SS G_CDS: 0.28 Total: 21.49 kcal
Atomic # 6 Polarization: -14.55 SS G_CDS: 5.78 Total: -8.77 kcal
Atomic # 7 Polarization: -110.75 SS G_CDS: -4.02 Total: -114.77 kcal
Atomic # 8 Polarization: -16.00 SS G_CDS: 0.75 Total: -15.25 kcal
Atomic # 14 Polarization: 46.79 SS G_CDS: 1.68 Total: 48.47 kcal
Total: -73.29 4.47 -68.82 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691920704.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.250 kcal
(2) G-P(sol) polarization free energy of solvation -73.293 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.957 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.819 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds