Wall clock time and date at job start Wed Apr 1 2020 05:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 113.30947 * 2 1 4 4 C 1.54516 * 113.96369 * 227.67770 * 2 1 3 5 5 H 1.08996 * 113.81441 * 94.96864 * 4 2 1 6 6 N 1.46502 * 114.83313 * 322.18170 * 4 2 1 7 7 C 1.34772 * 119.99778 * 161.36133 * 6 4 2 8 8 O 1.21281 * 120.00103 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99944 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47363 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47259 * 180.02562 * 10 9 7 12 12 C 1.41382 * 126.80410 * 125.00107 * 11 10 9 13 13 C 1.35445 * 103.98604 * 179.97438 * 12 11 10 14 14 O 1.34042 * 106.44581 * 359.97438 * 13 12 11 15 15 N 1.20926 * 111.56768 * 359.70936 * 14 13 12 16 16 C 1.49999 * 83.56718 * 208.53673 * 4 2 1 17 17 H 1.08995 * 112.50789 * 284.35031 * 16 4 2 18 18 C 1.51214 * 126.16967 * 141.95513 * 16 4 2 19 19 C 1.54093 * 106.19105 * 198.57416 * 18 16 4 20 20 C 1.52490 * 112.67536 * 55.43760 * 19 18 16 21 21 N 1.48409 * 111.87124 * 313.21482 * 20 19 18 22 22 C 1.36942 * 123.16356 * 231.83971 * 21 20 19 23 23 H 1.08001 * 119.99990 * 144.75403 * 22 21 20 24 24 C 1.38812 * 119.99981 * 324.74726 * 22 21 20 25 25 N 1.31624 * 119.99946 * 166.71065 * 24 22 21 26 26 Si 1.86796 * 120.00215 * 346.72090 * 24 22 21 27 27 H 1.48496 * 109.47606 * 86.95618 * 26 24 22 28 28 H 1.48500 * 109.47325 * 206.96362 * 26 24 22 29 29 H 1.48503 * 109.46958 * 326.95696 * 26 24 22 30 30 C 1.45379 * 113.66652 * 51.83351 * 21 20 19 31 31 H 1.09006 * 112.08716 * 59.77110 * 30 21 20 32 32 H 1.08997 * 109.46752 * 287.20778 * 1 2 3 33 33 H 1.09003 * 109.46879 * 47.20684 * 1 2 3 34 34 H 1.08999 * 109.46692 * 167.20641 * 1 2 3 35 35 H 1.09004 * 109.46837 * 181.59242 * 3 2 1 36 36 H 1.08993 * 109.47329 * 301.59163 * 3 2 1 37 37 H 1.08996 * 109.47091 * 61.59498 * 3 2 1 38 38 H 0.96999 * 120.00171 * 341.37146 * 6 4 2 39 39 H 1.08999 * 109.47204 * 300.00232 * 9 7 6 40 40 H 1.09002 * 109.47373 * 60.00235 * 9 7 6 41 41 H 1.09007 * 109.47101 * 299.99489 * 10 9 7 42 42 H 1.08995 * 109.47716 * 59.99578 * 10 9 7 43 43 H 1.07997 * 128.00486 * 359.96112 * 12 11 10 44 44 H 1.08000 * 126.77843 * 180.02562 * 13 12 11 45 45 H 1.08995 * 110.10202 * 79.40319 * 18 16 4 46 46 H 1.08998 * 110.09691 * 317.74064 * 18 16 4 47 47 H 1.08997 * 108.84294 * 294.60700 * 19 18 16 48 48 H 1.09003 * 108.83664 * 176.26150 * 19 18 16 49 49 H 1.08997 * 109.00283 * 73.82769 * 20 19 18 50 50 H 1.09004 * 109.00322 * 192.67495 * 20 19 18 51 51 H 0.96997 * 120.00245 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1355 1.4052 0.0000 4 6 2.1576 -0.9507 -1.0440 5 1 2.4153 -0.4633 -1.9842 6 7 1.4477 -2.2192 -1.2262 7 6 1.6552 -2.9540 -2.3368 8 8 2.4299 -2.5652 -3.1851 9 6 0.9246 -4.2585 -2.5245 10 6 1.3379 -4.8875 -3.8566 11 6 0.6068 -6.1918 -4.0446 12 6 -0.1974 -6.5607 -5.1474 13 6 -0.6201 -7.8105 -4.8407 14 8 -0.0845 -8.1106 -3.6492 15 7 0.5964 -7.2047 -3.2270 16 6 3.2859 -1.0157 -0.0578 17 1 3.9025 -0.1169 -0.0693 18 6 4.1033 -2.2412 0.2837 19 6 4.7829 -1.9419 1.6339 20 6 3.7853 -1.5604 2.7223 21 7 2.8028 -0.5560 2.2444 22 6 2.5433 0.6131 2.9086 23 1 2.3204 1.5119 2.3528 24 6 2.5666 0.6429 4.2962 25 7 2.5791 1.7966 4.9296 26 14 2.5803 -0.9544 5.2646 27 1 3.9807 -1.4184 5.4344 28 1 1.9681 -0.7297 6.5988 29 1 1.8029 -1.9850 4.5306 30 6 2.1420 -0.9301 1.0046 31 1 1.5931 -1.8671 1.0993 32 1 -0.3633 0.3040 0.9817 33 1 -0.3633 0.6982 -0.7541 34 1 -0.3633 -1.0022 -0.2276 35 1 3.2227 1.3323 -0.0286 36 1 1.7849 1.9519 -0.8753 37 1 1.8303 1.9323 0.9039 38 1 0.8283 -2.5302 -0.5476 39 1 1.1766 -4.9367 -1.7093 40 1 -0.1501 -4.0762 -2.5264 41 1 1.0861 -4.2095 -4.6722 42 1 2.4125 -5.0700 -3.8544 43 1 -0.4226 -5.9803 -6.0298 44 1 -1.2614 -8.4410 -5.4386 45 1 4.8567 -2.4150 -0.4846 46 1 3.4532 -3.1111 0.3762 47 1 5.4877 -1.1215 1.4990 48 1 5.3329 -2.8266 1.9548 49 1 3.2511 -2.4546 3.0433 50 1 4.3283 -1.1474 3.5725 51 1 2.5950 1.8175 5.8992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691920704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:04 Heat of formation + Delta-G solvation = 77.430948 kcal Electronic energy + Delta-G solvation = -31805.053400 eV Core-core repulsion = 27709.564277 eV Total energy + Delta-G solvation = -4095.489122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.84024 -42.75061 -40.23904 -37.20145 -36.23209 -34.88700 -34.42277 -33.05709 -32.66932 -32.04817 -30.84211 -28.55332 -27.68100 -27.07919 -25.76692 -24.01646 -23.93253 -22.57459 -22.04830 -21.24944 -20.75012 -19.61259 -18.83080 -18.69351 -18.45519 -17.89284 -17.06815 -16.76551 -16.67484 -16.04716 -15.64142 -15.49938 -15.36948 -15.31553 -15.04617 -14.64087 -14.50263 -14.23636 -14.12101 -14.06576 -13.92703 -13.42671 -13.30211 -13.27335 -13.13745 -12.90045 -12.80270 -12.67967 -12.60050 -12.25753 -11.99831 -11.97054 -11.93329 -11.64596 -11.49808 -11.33694 -11.21458 -11.05172 -10.80917 -10.67802 -10.49972 -10.28992 -9.93663 -8.56053 -8.09602 -5.49901 0.68173 1.29710 1.32815 1.38921 1.47249 1.64468 2.11768 2.45041 2.54375 3.05868 3.19258 3.25077 3.46781 3.61496 3.64212 3.79573 3.83767 4.01043 4.08249 4.12064 4.22276 4.28860 4.33815 4.37138 4.42005 4.52116 4.54747 4.61824 4.65999 4.73671 4.76768 4.83167 4.87278 4.94244 4.96114 4.99785 5.04489 5.08094 5.13062 5.14708 5.17734 5.22583 5.23982 5.34173 5.41498 5.50128 5.51856 5.75394 5.97588 6.36299 6.55239 6.95479 7.25423 7.41015 7.66140 8.23308 9.09142 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002630 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.586230 B =10643.564978 C =11228.923521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.119 4.119 4 C 0.160 3.840 5 H 0.094 0.906 6 N -0.697 5.697 7 C 0.521 3.479 8 O -0.575 6.575 9 C -0.126 4.126 10 C -0.021 4.021 11 C 0.004 3.996 12 C -0.242 4.242 13 C -0.045 4.045 14 O 0.084 5.916 15 N -0.399 5.399 16 C -0.164 4.164 17 H 0.088 0.912 18 C -0.078 4.078 19 C -0.123 4.123 20 C 0.122 3.878 21 N -0.601 5.601 22 C -0.230 4.230 23 H 0.079 0.921 24 C -0.033 4.033 25 N -0.961 5.961 26 Si 0.940 3.060 27 H -0.281 1.281 28 H -0.317 1.317 29 H -0.264 1.264 30 C 0.133 3.867 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.410 0.590 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.195 0.805 44 H 0.260 0.740 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.076 0.924 49 H 0.024 0.976 50 H 0.044 0.956 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.047 -17.599 -21.955 29.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.063 4.063 3 C -0.176 4.176 4 C 0.054 3.946 5 H 0.112 0.888 6 N -0.349 5.349 7 C 0.310 3.690 8 O -0.454 6.454 9 C -0.166 4.166 10 C -0.059 4.059 11 C -0.154 4.154 12 C -0.263 4.263 13 C -0.126 4.126 14 O 0.019 5.981 15 N -0.105 5.105 16 C -0.185 4.185 17 H 0.106 0.894 18 C -0.116 4.116 19 C -0.162 4.162 20 C -0.002 4.002 21 N -0.325 5.325 22 C -0.360 4.360 23 H 0.096 0.904 24 C -0.227 4.227 25 N -0.608 5.608 26 Si 0.770 3.230 27 H -0.208 1.208 28 H -0.246 1.246 29 H -0.188 1.188 30 C 0.027 3.973 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.248 0.752 39 H 0.118 0.882 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.212 0.788 44 H 0.276 0.724 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.042 0.958 50 H 0.063 0.937 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.933 -17.486 -21.175 28.323 hybrid contribution -0.192 0.028 1.031 1.049 sum -7.124 -17.458 -20.144 27.592 Atomic orbital electron populations 1.21655 0.93052 1.02483 1.01626 1.21615 0.96077 0.94926 0.93653 1.21697 1.00224 0.94097 1.01593 1.20878 0.91873 0.84875 0.96989 0.88794 1.45654 1.45756 1.21278 1.22163 1.20909 0.81582 0.86013 0.80533 1.90690 1.38199 1.72652 1.43894 1.21567 1.02402 0.93090 0.99589 1.19641 0.99002 0.89304 0.97951 1.23884 1.01148 0.97082 0.93328 1.23146 1.02885 0.97985 1.02284 1.26893 1.00237 0.98057 0.87373 1.84807 1.46817 1.35264 1.31183 1.73870 1.13722 0.98813 1.24099 1.23339 0.96949 0.99536 0.98641 0.89427 1.20955 0.98444 0.96810 0.95350 1.21821 0.97836 1.00969 0.95609 1.21410 0.91018 0.91513 0.96307 1.44266 1.41614 1.19706 1.26915 1.19145 1.40489 0.87676 0.88641 0.90382 1.26094 1.00307 0.98304 0.98037 1.69895 1.56935 1.25917 1.08063 0.85991 0.77626 0.82255 0.77099 1.20753 1.24574 1.18823 1.22060 0.94434 0.96026 0.84800 0.92206 0.93736 0.91354 0.91152 0.92892 0.91274 0.92881 0.75243 0.88211 0.86555 0.88039 0.90632 0.78793 0.72386 0.92388 0.92146 0.93060 0.90574 0.95774 0.93746 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.21 71.98 0.66 -2.82 16 2 C -0.06 -1.89 1.36 -57.14 -0.08 -1.97 16 3 C -0.12 -4.00 8.15 71.98 0.59 -3.41 16 4 C 0.16 4.44 3.82 42.02 0.16 4.61 16 5 H 0.09 2.75 7.60 -2.39 -0.02 2.73 16 6 N -0.70 -15.80 4.26 -456.92 -1.95 -17.75 16 7 C 0.52 11.99 7.83 87.66 0.69 12.68 16 8 O -0.57 -17.36 15.65 -3.03 -0.05 -17.40 16 9 C -0.13 -2.13 5.67 29.85 0.17 -1.96 16 10 C -0.02 -0.36 5.10 29.85 0.15 -0.20 16 11 C 0.00 0.06 6.59 43.58 0.29 0.35 16 12 C -0.24 -2.57 11.12 22.40 0.25 -2.32 16 13 C -0.04 -0.36 12.30 67.17 0.83 0.47 16 14 O 0.08 1.36 11.20 71.61 0.80 2.16 16 15 N -0.40 -8.18 12.06 -49.57 -0.60 -8.78 16 16 C -0.16 -5.26 2.98 -15.68 -0.05 -5.31 16 17 H 0.09 3.17 5.76 -2.39 -0.01 3.15 16 18 C -0.08 -2.38 5.94 30.38 0.18 -2.20 16 19 C -0.12 -4.17 5.90 30.80 0.18 -3.98 16 20 C 0.12 5.07 4.23 85.84 0.36 5.44 16 21 N -0.60 -26.93 2.58 -689.92 -1.78 -28.70 16 22 C -0.23 -12.38 9.75 84.03 0.82 -11.56 16 23 H 0.08 4.46 4.93 -2.91 -0.01 4.44 16 24 C -0.03 -1.90 5.37 84.86 0.46 -1.45 16 25 N -0.96 -59.85 13.97 21.65 0.30 -59.54 16 26 Si 0.94 46.79 24.44 68.60 1.68 48.47 16 27 H -0.28 -13.45 6.56 99.48 0.65 -12.80 16 28 H -0.32 -16.22 7.11 99.48 0.71 -15.52 16 29 H -0.26 -12.52 6.70 99.48 0.67 -11.86 16 30 C 0.13 4.75 2.99 42.87 0.13 4.88 16 31 H 0.06 2.03 6.59 -2.38 -0.02 2.01 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.52 6.38 -2.39 -0.02 1.50 16 35 H 0.05 1.88 5.81 -2.39 -0.01 1.87 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 2.14 5.64 -2.39 -0.01 2.12 16 38 H 0.41 7.96 6.30 -92.71 -0.58 7.38 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.10 1.59 8.09 -2.38 -0.02 1.57 16 42 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 43 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.26 -0.68 8.06 -2.91 -0.02 -0.70 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 1.75 7.98 -2.39 -0.02 1.73 16 47 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.02 0.99 6.95 -2.39 -0.02 0.97 16 50 H 0.04 2.05 5.21 -2.38 -0.01 2.04 16 51 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -73.29 387.71 4.47 -68.82 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.28 Total: 21.49 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 5.78 Total: -8.77 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.02 Total: -114.77 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.75 Total: -15.25 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.68 Total: 48.47 kcal Total: -73.29 4.47 -68.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691920704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.250 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds