Wall clock time and date at job start Wed Apr 1 2020 04:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30018 * 127.33306 * 2 1 4 4 O 1.20659 * 112.29588 * 180.02562 * 3 2 1 5 5 C 1.33488 * 113.16175 * 359.75713 * 4 3 2 6 6 C 1.50698 * 126.83137 * 180.30649 * 5 4 3 7 7 C 1.53003 * 117.49784 * 8.84659 * 6 5 4 8 8 C 1.53004 * 117.49795 * 300.18993 * 6 5 4 9 9 C 1.37359 * 106.34182 * 0.38894 * 5 4 3 10 10 C 1.47389 * 128.56804 * 179.91187 * 9 5 4 11 11 O 1.21616 * 120.00298 * 269.70269 * 10 9 5 12 12 N 1.34784 * 120.00408 * 89.69874 * 10 9 5 13 13 C 1.46992 * 120.60795 * 0.02737 * 12 10 9 14 14 C 1.53196 * 108.73878 * 126.38575 * 13 12 10 15 15 C 1.53039 * 109.33748 * 54.61838 * 14 13 12 16 16 C 1.53042 * 109.54198 * 298.62051 * 15 14 13 17 17 H 1.08998 * 109.49465 * 301.41768 * 16 15 14 18 18 C 1.52996 * 109.50066 * 181.31673 * 16 15 14 19 19 C 1.52997 * 109.47017 * 175.00029 * 18 16 15 20 20 N 1.46498 * 109.47115 * 180.02562 * 19 18 16 21 21 C 1.36938 * 120.00178 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99810 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99910 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00123 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99821 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47413 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47286 * 119.99961 * 25 23 21 28 28 H 1.48507 * 109.47129 * 239.99979 * 25 23 21 29 29 C 1.46922 * 120.63264 * 180.02562 * 12 10 9 30 30 H 1.08998 * 109.47074 * 270.00074 * 1 2 3 31 31 H 1.09002 * 109.47442 * 29.99884 * 1 2 3 32 32 H 1.08998 * 109.47334 * 149.99602 * 1 2 3 33 33 H 1.08993 * 115.55255 * 154.52260 * 6 5 4 34 34 H 1.09002 * 117.49836 * 0.02562 * 7 6 5 35 35 H 1.09000 * 117.49669 * 145.02462 * 7 6 5 36 36 H 1.09000 * 117.50132 * 214.98345 * 8 6 5 37 37 H 1.09003 * 117.49722 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.63362 * 6.59761 * 13 12 10 39 39 H 1.08996 * 109.58160 * 246.14366 * 13 12 10 40 40 H 1.09002 * 109.49815 * 294.65150 * 14 13 12 41 41 H 1.09000 * 109.49595 * 174.58548 * 14 13 12 42 42 H 1.09006 * 109.46255 * 58.64043 * 15 14 13 43 43 H 1.08997 * 109.45914 * 178.59648 * 15 14 13 44 44 H 1.09000 * 109.46674 * 295.00137 * 18 16 15 45 45 H 1.09005 * 109.46974 * 54.99642 * 18 16 15 46 46 H 1.09001 * 109.46964 * 299.99593 * 19 18 16 47 47 H 1.08991 * 109.47336 * 60.00044 * 19 18 16 48 48 H 0.97002 * 119.99810 * 359.97438 * 20 19 18 49 49 H 0.97002 * 119.99745 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.58306 * 113.84962 * 29 12 10 51 51 H 1.08993 * 109.58723 * 353.42140 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0043 6 6 4.9712 -1.3245 0.0116 7 6 6.2341 -0.4870 0.2226 8 6 5.9231 -1.0688 -1.1587 9 6 2.3992 -1.1696 -0.0007 10 6 2.0401 -2.5991 -0.0002 11 8 1.8915 -3.1891 -1.0533 12 7 1.8765 -3.2526 1.1672 13 6 2.0522 -2.5526 2.4477 14 6 0.7959 -2.7614 3.2992 15 6 0.5189 -4.2604 3.4346 16 6 0.2684 -4.8618 2.0497 17 1 -0.5763 -4.3569 1.5812 18 6 -0.0407 -6.3537 2.1891 19 6 -0.4129 -6.9275 0.8205 20 7 -0.7095 -8.3559 0.9541 21 6 -1.0697 -9.0863 -0.1468 22 1 -1.1347 -8.6094 -1.1136 23 6 -1.3503 -10.4398 -0.0203 24 7 -1.2706 -11.0211 1.1578 25 14 -1.8409 -11.4363 -1.5222 26 1 -1.8559 -10.5553 -2.7176 27 1 -0.8624 -12.5340 -1.7293 28 1 -3.1940 -12.0119 -1.3139 29 6 1.5191 -4.6776 1.1837 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 4.9555 -2.3276 0.4376 34 1 6.1089 0.5875 0.3565 35 1 7.0494 -0.9393 0.7871 36 1 6.5339 -1.9037 -1.5023 37 1 5.5931 -0.3774 -1.9340 38 1 2.1976 -1.4877 2.2661 39 1 2.9189 -2.9581 2.9697 40 1 -0.0539 -2.2763 2.8190 41 1 0.9506 -2.3293 4.2879 42 1 1.3792 -4.7489 3.8924 43 1 -0.3603 -4.4121 4.0608 44 1 0.8374 -6.8723 2.5740 45 1 -0.8740 -6.4892 2.8788 46 1 -1.2910 -6.4089 0.4357 47 1 0.4203 -6.7920 0.1310 48 1 -0.6508 -8.7843 1.8224 49 1 -1.4670 -11.9669 1.2463 50 1 2.3425 -5.2559 1.6029 51 1 1.3131 -5.0144 0.1678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698674838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:14 Heat of formation + Delta-G solvation = 50.425598 kcal Electronic energy + Delta-G solvation = -31052.154822 eV Core-core repulsion = 26955.494660 eV Total energy + Delta-G solvation = -4096.660162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.21190 -40.33125 -37.99198 -37.73820 -35.40496 -34.86132 -33.51273 -32.23409 -32.01326 -30.64022 -29.12785 -27.61840 -26.37146 -24.40389 -24.12406 -23.73147 -22.88939 -22.60163 -21.01429 -20.52812 -19.90522 -19.38050 -18.20998 -17.75065 -17.03322 -16.86938 -16.44209 -16.16494 -15.27933 -14.85525 -14.75110 -14.65793 -14.30518 -13.83482 -13.70686 -13.67376 -13.63554 -13.39680 -13.38414 -13.06529 -13.02688 -12.75064 -12.46226 -12.26708 -12.07911 -11.82386 -11.55527 -11.47425 -11.17924 -11.14156 -11.05065 -10.94313 -10.84909 -10.63171 -10.47153 -10.35376 -10.23216 -10.10640 -9.89581 -9.63280 -9.47252 -8.83214 -8.81620 -6.87454 -5.72983 -3.01083 0.90855 1.58424 2.18972 2.40833 2.85730 3.26552 3.46381 3.52299 3.54755 3.71470 3.79344 4.21147 4.24493 4.37573 4.41858 4.49614 4.64289 4.67418 4.76602 4.88339 4.90386 5.01020 5.07733 5.13199 5.14778 5.17082 5.24186 5.28245 5.37456 5.40116 5.49596 5.54836 5.58161 5.58982 5.59187 5.66200 5.70849 5.75391 5.85569 5.94831 6.01382 6.18337 6.21613 6.31499 6.43113 6.46709 6.89755 6.92914 7.13867 7.75643 7.88775 7.91415 8.46521 9.57537 10.15986 10.50568 11.50227 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.002302 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.968293 B =12157.984047 C =12691.217881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.354 5.354 4 O 0.096 5.904 5 C 0.046 3.954 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.235 4.235 10 C 0.597 3.403 11 O -0.518 6.518 12 N -0.599 5.599 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.115 4.115 16 C -0.095 4.095 17 H 0.075 0.925 18 C -0.118 4.118 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.114 3.886 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.072 0.928 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 26.642 5.152 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.061 5.061 4 O 0.035 5.965 5 C -0.017 4.017 6 C -0.114 4.114 7 C -0.198 4.198 8 C -0.192 4.192 9 C -0.242 4.242 10 C 0.383 3.617 11 O -0.394 6.394 12 N -0.332 5.332 13 C -0.014 4.014 14 C -0.172 4.172 15 C -0.153 4.153 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.157 4.157 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.007 4.007 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.156 0.844 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.766 27.596 4.396 30.722 hybrid contribution -0.460 -1.546 -0.419 1.667 sum 12.305 26.050 3.977 29.084 Atomic orbital electron populations 1.20255 0.84989 1.04549 1.03877 1.24750 0.98621 0.86351 1.00860 1.73637 0.88994 1.23169 1.20315 1.84497 1.21571 1.22307 1.68172 1.23498 0.95472 0.83469 0.99251 1.20504 0.83994 0.99409 1.07455 1.23121 0.96740 1.00254 0.99690 1.23144 1.00423 1.03932 0.91711 1.21792 0.92487 0.95416 1.14547 1.16917 0.77147 0.83840 0.83809 1.90869 1.50004 1.67625 1.30856 1.48097 1.68408 1.11427 1.05261 1.21746 0.98493 0.97158 0.84033 1.21917 0.97714 0.97736 0.99806 1.21601 1.02279 0.94292 0.97113 1.21472 0.97560 0.97184 0.95286 0.90700 1.21731 1.01755 0.92760 0.99424 1.20711 0.97000 0.86356 0.93628 1.42380 1.82786 1.03638 1.09016 1.19305 1.37605 0.91052 0.88743 0.91135 1.24737 1.02832 0.96843 0.96783 1.69672 1.56171 1.10855 1.21751 0.86121 0.77765 0.80206 0.82180 1.20505 1.21875 1.21893 1.21924 0.96912 0.78741 1.03134 0.89558 0.89812 0.89520 0.84386 0.87602 0.87274 0.87094 0.87948 0.90444 0.91011 0.91455 0.90699 0.91573 0.91272 0.91726 0.91459 0.96521 0.96183 0.78368 0.93635 0.90967 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.49 36.01 0.38 -0.30 16 2 C 0.06 0.61 7.55 -79.76 -0.60 0.01 16 3 N -0.35 -4.05 12.01 34.78 0.42 -3.63 16 4 O 0.10 1.00 10.86 18.66 0.20 1.21 16 5 C 0.05 0.46 7.00 -34.63 -0.24 0.22 16 6 C -0.09 -0.71 6.15 -91.77 -0.56 -1.27 16 7 C -0.16 -0.83 10.19 -26.69 -0.27 -1.11 16 8 C -0.15 -0.97 10.24 -26.69 -0.27 -1.24 16 9 C -0.24 -2.70 4.19 -102.90 -0.43 -3.13 16 10 C 0.60 7.98 7.52 -12.53 -0.09 7.88 16 11 O -0.52 -9.08 16.52 5.26 0.09 -9.00 16 12 N -0.60 -6.76 2.97 -173.97 -0.52 -7.28 16 13 C 0.11 0.90 6.34 -3.67 -0.02 0.88 16 14 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 15 C -0.12 -1.09 5.17 -26.69 -0.14 -1.22 16 16 C -0.10 -1.17 2.34 -90.48 -0.21 -1.38 16 17 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.12 -1.83 4.80 -26.73 -0.13 -1.96 16 19 C 0.15 3.08 6.02 -4.04 -0.02 3.05 16 20 N -0.73 -19.09 5.60 -59.91 -0.34 -19.42 16 21 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 22 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.94 -28.77 13.06 55.49 0.72 -28.04 16 25 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 C 0.11 1.46 5.33 -3.69 -0.02 1.44 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 0.53 8.02 -51.93 -0.42 0.12 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.62 6.31 -51.93 -0.33 0.30 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.42 6.70 -51.93 -0.35 0.08 16 48 H 0.38 10.34 7.67 -40.82 -0.31 10.02 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.10 1.59 5.73 -51.93 -0.30 1.30 16 LS Contribution 415.76 15.07 6.27 6.27 Total: -1.00 -34.60 415.76 -9.67 -44.26 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.44 Total: 4.59 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.05 Total: -6.88 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.29 Total: -58.37 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.29 Total: -7.79 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.60 -9.67 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698674838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.691 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds