Wall clock time and date at job start Wed Apr 1 2020 04:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34864 * 119.10113 * 2 1 4 4 C 1.41667 * 119.33991 * 180.02562 * 3 2 1 5 5 O 1.22091 * 121.06555 * 179.97438 * 4 3 2 6 6 C 1.47100 * 117.86357 * 359.77120 * 4 3 2 7 7 C 1.47285 * 120.87993 * 180.24179 * 6 4 3 8 8 O 1.21616 * 120.00527 * 0.23008 * 7 6 4 9 9 N 1.34782 * 119.99792 * 180.23063 * 7 6 4 10 10 C 1.46501 * 119.99922 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47127 * 35.00093 * 10 9 7 12 12 C 1.53007 * 109.46867 * 154.99968 * 10 9 7 13 13 N 1.46503 * 109.47252 * 305.00165 * 12 10 9 14 14 C 1.36936 * 119.99994 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99726 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99911 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99983 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00025 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47128 * 59.99807 * 18 16 14 20 20 H 1.48503 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47242 * 300.00318 * 18 16 14 22 22 C 1.52998 * 109.47063 * 274.99878 * 10 9 7 23 23 C 1.52998 * 109.47010 * 180.02562 * 22 10 9 24 24 C 1.53001 * 109.47311 * 180.02562 * 23 22 10 25 25 C 1.52992 * 109.46946 * 59.99702 * 24 23 22 26 26 C 1.52998 * 109.47359 * 300.00268 * 25 24 23 27 27 C 1.52994 * 109.47045 * 60.00426 * 22 10 9 28 28 C 1.37985 * 118.23513 * 0.46941 * 6 4 3 29 29 N 1.34355 * 120.37113 * 359.51525 * 28 6 4 30 30 H 0.96996 * 118.80203 * 180.23794 * 29 28 6 31 31 H 1.09002 * 109.46728 * 269.97533 * 1 2 3 32 32 H 1.09002 * 109.46911 * 29.97578 * 1 2 3 33 33 H 1.08994 * 109.47090 * 149.97576 * 1 2 3 34 34 H 1.08007 * 120.33263 * 0.02562 * 3 2 1 35 35 H 0.96999 * 120.00113 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47181 * 65.00177 * 12 10 9 37 37 H 1.08999 * 109.46650 * 184.99994 * 12 10 9 38 38 H 0.97005 * 119.99807 * 359.97438 * 13 12 10 39 39 H 0.97000 * 120.00275 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47325 * 300.00094 * 22 10 9 41 41 H 1.08997 * 109.47025 * 300.00120 * 23 22 10 42 42 H 1.08999 * 109.47100 * 60.00073 * 23 22 10 43 43 H 1.09004 * 109.46705 * 300.00178 * 24 23 22 44 44 H 1.09004 * 109.47026 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.47258 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.47030 * 60.00675 * 25 24 23 47 47 H 1.09002 * 109.46925 * 299.99574 * 26 25 24 48 48 H 1.08999 * 109.47100 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47235 * 299.99536 * 27 22 10 50 50 H 1.08997 * 109.47330 * 59.99671 * 27 22 10 51 51 H 1.08002 * 119.81675 * 179.80029 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1133 0.0041 7 6 5.7436 -0.1846 0.0091 8 8 6.4021 0.8378 0.0137 9 7 6.3602 -1.3832 0.0086 10 6 7.8235 -1.4542 0.0131 11 1 8.2253 -0.6322 0.6055 12 6 8.2675 -2.7860 0.6215 13 7 7.6712 -2.9387 1.9509 14 6 7.9286 -4.0610 2.6921 15 1 8.5710 -4.8337 2.2964 16 6 7.3640 -4.2053 3.9519 17 7 6.5816 -3.2633 4.4343 18 14 7.7146 -5.7365 4.9627 19 1 9.1751 -5.8429 5.2097 20 1 6.9987 -5.6476 6.2607 21 1 7.2494 -6.9363 4.2214 22 6 8.3434 -1.3504 -1.4221 23 6 9.8716 -1.4253 -1.4174 24 6 10.3917 -1.3209 -2.8525 25 6 9.9481 0.0113 -3.4601 26 6 8.4199 0.0861 -3.4647 27 6 7.8994 -0.0187 -2.0303 28 6 3.5077 -1.2618 -0.0012 29 7 2.1664 -1.1847 -0.0006 30 1 1.6511 -2.0064 -0.0009 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6137 2.1084 0.0004 35 1 5.8350 -2.1987 0.0046 36 1 7.9410 -3.6050 -0.0194 37 1 9.3541 -2.8022 0.7066 38 1 7.0945 -2.2443 2.3064 39 1 6.1867 -3.3643 5.3145 40 1 7.9416 -2.1724 -2.0144 41 1 10.2738 -0.6035 -0.8250 42 1 10.1876 -2.3742 -0.9842 43 1 9.9894 -2.1424 -3.4454 44 1 11.4804 -1.3746 -2.8492 45 1 10.3182 0.0856 -4.4827 46 1 10.3503 0.8329 -2.8672 47 1 8.0178 -0.7354 -4.0576 48 1 8.1039 1.0351 -3.8979 49 1 6.8107 0.0342 -2.0337 50 1 8.3012 0.8033 -1.4379 51 1 3.9900 -2.2281 -0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698883941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:59 Heat of formation + Delta-G solvation = -49.850019 kcal Electronic energy + Delta-G solvation = -31695.154961 eV Core-core repulsion = 27594.146522 eV Total energy + Delta-G solvation = -4101.008439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.01292 -39.66311 -37.98528 -37.33531 -35.52483 -33.72341 -33.34181 -31.84469 -30.96209 -30.49849 -30.34293 -28.28461 -26.80595 -24.24093 -23.74865 -22.61207 -22.20346 -21.64909 -21.13273 -19.98021 -19.58322 -18.72612 -17.51062 -17.14042 -16.20684 -15.99019 -15.67720 -15.46100 -15.30093 -14.61948 -14.50187 -14.11355 -14.02869 -13.86927 -13.60013 -13.43281 -13.30806 -13.16508 -13.10834 -12.99036 -12.92754 -12.79948 -12.31839 -12.25840 -11.90578 -11.80931 -11.58764 -11.18040 -10.90653 -10.85028 -10.82796 -10.57042 -10.33105 -10.18372 -9.95540 -9.77220 -9.63960 -9.60204 -9.53520 -8.98842 -8.89271 -8.43347 -8.03318 -6.96608 -5.79564 -3.09284 0.87813 1.29308 2.57705 3.28638 3.39413 3.45218 3.45706 3.56962 4.05910 4.07756 4.43255 4.54328 4.61976 4.86528 4.87332 4.95394 4.97038 4.98802 5.03748 5.28398 5.35326 5.38748 5.48176 5.52607 5.54941 5.61834 5.69408 5.72453 5.76360 5.78978 5.84668 5.90956 6.02780 6.09178 6.18808 6.23931 6.30601 6.33348 6.41141 6.44145 6.55110 6.57183 6.61296 6.63887 6.72342 6.75509 6.86111 7.10356 7.65524 8.03874 8.27282 8.38218 8.82008 9.49906 10.07310 10.42976 11.42389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.005964 B = 0.004698 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4693.997342 B = 5958.371551 C = 9899.209889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 C -0.272 4.272 4 C 0.409 3.591 5 O -0.481 6.481 6 C -0.293 4.293 7 C 0.572 3.428 8 O -0.512 6.512 9 N -0.716 5.716 10 C 0.145 3.855 11 H 0.087 0.913 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.069 0.931 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.090 4.090 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.105 4.105 28 C 0.175 3.825 29 N -0.578 5.578 30 H 0.420 0.580 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.394 0.606 36 H 0.022 0.978 37 H 0.036 0.964 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.652 1.707 -16.014 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.047 3.953 3 C -0.297 4.297 4 C 0.294 3.706 5 O -0.361 6.361 6 C -0.304 4.304 7 C 0.359 3.641 8 O -0.387 6.387 9 N -0.368 5.368 10 C 0.041 3.959 11 H 0.105 0.895 12 C 0.017 3.983 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.737 3.263 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.110 4.110 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.142 4.142 28 C 0.043 3.957 29 N -0.185 5.185 30 H 0.256 0.744 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.228 0.772 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.763 2.921 -15.934 18.914 hybrid contribution -0.568 -1.661 0.896 1.971 sum -10.331 1.261 -15.038 18.288 Atomic orbital electron populations 1.21087 0.88083 1.04661 1.04366 1.20255 0.94690 0.85628 0.94746 1.22249 0.96435 0.97190 1.13801 1.18148 0.88171 0.87989 0.76261 1.90813 1.69961 1.33238 1.42127 1.22582 0.94839 0.94920 1.18027 1.17365 0.85922 0.83862 0.76933 1.90830 1.65604 1.33999 1.48262 1.45848 1.07508 1.07565 1.75874 1.21262 0.79264 1.00034 0.95379 0.89487 1.21013 0.96840 0.92511 0.87962 1.42377 1.58131 1.23084 1.14030 1.19174 1.24219 0.96662 0.97240 0.91254 1.24733 1.00214 0.98193 0.97629 1.69666 1.36097 1.33591 1.18533 0.86296 0.77746 0.82646 0.79622 1.21246 1.21754 1.21364 1.21505 0.95453 0.98132 0.95894 1.21610 0.94861 1.02437 0.96411 1.21503 0.99893 0.97377 0.96543 1.21534 0.96182 0.97914 0.99987 1.21551 0.95402 1.00893 0.97791 1.21604 1.00674 0.97279 0.94668 1.22299 0.82498 1.00292 0.90584 1.40691 1.06008 1.08875 1.62888 0.74371 0.89224 0.88900 0.90556 0.83291 0.77173 0.96038 0.94649 0.77945 0.93488 0.91522 0.91787 0.91285 0.92335 0.92369 0.92789 0.92088 0.92761 0.92622 0.92147 0.91130 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.03 36.01 0.36 -0.11 16 2 C 0.15 1.23 6.79 -82.13 -0.56 0.67 16 3 C -0.27 -3.28 9.57 -39.47 -0.38 -3.65 16 4 C 0.41 7.07 6.96 -34.68 -0.24 6.83 16 5 O -0.48 -10.64 16.41 -15.18 -0.25 -10.89 16 6 C -0.29 -4.59 6.05 -102.72 -0.62 -5.22 16 7 C 0.57 10.55 6.12 -12.58 -0.08 10.48 16 8 O -0.51 -11.47 12.69 -14.75 -0.19 -11.65 16 9 N -0.72 -11.67 4.36 -54.92 -0.24 -11.91 16 10 C 0.15 2.50 2.00 -67.93 -0.14 2.37 16 11 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 12 C 0.14 2.77 5.31 -4.04 -0.02 2.75 16 13 N -0.73 -17.76 5.43 -59.90 -0.33 -18.09 16 14 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 18 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.09 -1.30 1.96 -90.62 -0.18 -1.47 16 23 C -0.12 -1.54 4.85 -26.73 -0.13 -1.67 16 24 C -0.12 -1.33 5.92 -26.73 -0.16 -1.48 16 25 C -0.12 -1.38 5.92 -26.74 -0.16 -1.53 16 26 C -0.12 -1.51 5.92 -26.76 -0.16 -1.67 16 27 C -0.10 -1.60 3.72 -26.76 -0.10 -1.70 16 28 C 0.17 1.81 10.74 -16.54 -0.18 1.63 16 29 N -0.58 -4.12 5.16 -9.00 -0.05 -4.16 16 30 H 0.42 1.32 8.70 -40.82 -0.35 0.97 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.29 8.05 -51.93 -0.42 -0.13 16 33 H 0.08 0.13 8.12 -51.93 -0.42 -0.29 16 34 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.39 5.62 6.68 -40.82 -0.27 5.35 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 38 H 0.39 10.16 7.33 -40.82 -0.30 9.86 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 1.02 5.78 -51.93 -0.30 0.72 16 50 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 51 H 0.17 1.36 6.42 -52.49 -0.34 1.02 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -38.25 400.41 -10.36 -48.61 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -8.07 Total: 12.93 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.98 Total: -0.87 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.11 Total: -60.94 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.44 Total: -22.54 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.25 -10.36 -48.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698883941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.237 kcal (2) G-P(sol) polarization free energy of solvation -38.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds