Wall clock time and date at job start Wed Apr 1 2020 04:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34864 * 119.10113 * 2 1 4 4 C 1.41667 * 119.33991 * 180.02562 * 3 2 1 5 5 O 1.22091 * 121.06555 * 179.97438 * 4 3 2 6 6 C 1.47100 * 117.86357 * 359.77120 * 4 3 2 7 7 C 1.47285 * 120.87993 * 180.24179 * 6 4 3 8 8 O 1.21616 * 120.00527 * 0.23008 * 7 6 4 9 9 N 1.34782 * 119.99792 * 180.23063 * 7 6 4 10 10 C 1.46501 * 119.99922 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47127 * 35.00093 * 10 9 7 12 12 C 1.53007 * 109.46867 * 154.99968 * 10 9 7 13 13 N 1.46503 * 109.47252 * 305.00165 * 12 10 9 14 14 C 1.36936 * 119.99994 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99726 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99911 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99983 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00025 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47128 * 59.99807 * 18 16 14 20 20 H 1.48503 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47242 * 300.00318 * 18 16 14 22 22 C 1.52998 * 109.47063 * 274.99878 * 10 9 7 23 23 C 1.52998 * 109.47010 * 180.02562 * 22 10 9 24 24 C 1.53001 * 109.47311 * 180.02562 * 23 22 10 25 25 C 1.52992 * 109.46946 * 59.99702 * 24 23 22 26 26 C 1.52998 * 109.47359 * 300.00268 * 25 24 23 27 27 C 1.52994 * 109.47045 * 60.00426 * 22 10 9 28 28 C 1.37985 * 118.23513 * 0.46941 * 6 4 3 29 29 N 1.34355 * 120.37113 * 359.51525 * 28 6 4 30 30 H 0.96996 * 118.80203 * 180.23794 * 29 28 6 31 31 H 1.09002 * 109.46728 * 269.97533 * 1 2 3 32 32 H 1.09002 * 109.46911 * 29.97578 * 1 2 3 33 33 H 1.08994 * 109.47090 * 149.97576 * 1 2 3 34 34 H 1.08007 * 120.33263 * 0.02562 * 3 2 1 35 35 H 0.96999 * 120.00113 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47181 * 65.00177 * 12 10 9 37 37 H 1.08999 * 109.46650 * 184.99994 * 12 10 9 38 38 H 0.97005 * 119.99807 * 359.97438 * 13 12 10 39 39 H 0.97000 * 120.00275 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47325 * 300.00094 * 22 10 9 41 41 H 1.08997 * 109.47025 * 300.00120 * 23 22 10 42 42 H 1.08999 * 109.47100 * 60.00073 * 23 22 10 43 43 H 1.09004 * 109.46705 * 300.00178 * 24 23 22 44 44 H 1.09004 * 109.47026 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.47258 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.47030 * 60.00675 * 25 24 23 47 47 H 1.09002 * 109.46925 * 299.99574 * 26 25 24 48 48 H 1.08999 * 109.47100 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.47235 * 299.99536 * 27 22 10 50 50 H 1.08997 * 109.47330 * 59.99671 * 27 22 10 51 51 H 1.08002 * 119.81675 * 179.80029 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1133 0.0041 7 6 5.7436 -0.1846 0.0091 8 8 6.4021 0.8378 0.0137 9 7 6.3602 -1.3832 0.0086 10 6 7.8235 -1.4542 0.0131 11 1 8.2253 -0.6322 0.6055 12 6 8.2675 -2.7860 0.6215 13 7 7.6712 -2.9387 1.9509 14 6 7.9286 -4.0610 2.6921 15 1 8.5710 -4.8337 2.2964 16 6 7.3640 -4.2053 3.9519 17 7 6.5816 -3.2633 4.4343 18 14 7.7146 -5.7365 4.9627 19 1 9.1751 -5.8429 5.2097 20 1 6.9987 -5.6476 6.2607 21 1 7.2494 -6.9363 4.2214 22 6 8.3434 -1.3504 -1.4221 23 6 9.8716 -1.4253 -1.4174 24 6 10.3917 -1.3209 -2.8525 25 6 9.9481 0.0113 -3.4601 26 6 8.4199 0.0861 -3.4647 27 6 7.8994 -0.0187 -2.0303 28 6 3.5077 -1.2618 -0.0012 29 7 2.1664 -1.1847 -0.0006 30 1 1.6511 -2.0064 -0.0009 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6137 2.1084 0.0004 35 1 5.8350 -2.1987 0.0046 36 1 7.9410 -3.6050 -0.0194 37 1 9.3541 -2.8022 0.7066 38 1 7.0945 -2.2443 2.3064 39 1 6.1867 -3.3643 5.3145 40 1 7.9416 -2.1724 -2.0144 41 1 10.2738 -0.6035 -0.8250 42 1 10.1876 -2.3742 -0.9842 43 1 9.9894 -2.1424 -3.4454 44 1 11.4804 -1.3746 -2.8492 45 1 10.3182 0.0856 -4.4827 46 1 10.3503 0.8329 -2.8672 47 1 8.0178 -0.7354 -4.0576 48 1 8.1039 1.0351 -3.8979 49 1 6.8107 0.0342 -2.0337 50 1 8.3012 0.8033 -1.4379 51 1 3.9900 -2.2281 -0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698883941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:58 Heat of formation + Delta-G solvation = -76.673563 kcal Electronic energy + Delta-G solvation = -31696.318117 eV Core-core repulsion = 27594.146522 eV Total energy + Delta-G solvation = -4102.171595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04601 -40.93077 -39.18814 -38.58821 -37.11319 -35.30913 -34.39899 -33.14758 -32.43231 -31.86961 -31.46011 -29.13551 -28.27672 -25.66959 -25.06513 -23.91966 -23.21899 -22.95990 -22.31992 -21.37743 -20.69188 -19.87143 -19.04414 -18.54756 -17.28142 -17.17451 -16.97592 -16.84217 -16.44733 -16.20085 -15.66666 -15.43243 -15.22901 -15.07154 -14.96013 -14.83346 -14.56588 -14.47211 -14.37222 -13.93580 -13.75254 -13.67768 -13.42689 -13.23870 -13.11459 -13.02225 -12.85692 -12.83244 -12.65207 -12.41124 -12.09484 -11.98391 -11.83254 -11.75558 -11.40780 -11.15095 -11.00541 -10.92852 -10.78303 -10.44333 -10.26664 -9.83684 -9.15851 -8.97865 -7.90671 -5.20707 -0.15165 0.35608 1.49808 1.53228 1.58744 1.78617 1.99343 2.25868 2.58464 2.85126 3.35347 3.43072 3.61302 3.65255 3.74842 3.85417 3.88983 3.99265 4.09763 4.18874 4.27562 4.30883 4.41217 4.48051 4.51761 4.61883 4.66824 4.68530 4.73943 4.74348 4.79735 4.81625 4.84165 4.94372 5.04211 5.17482 5.18432 5.20995 5.28713 5.31740 5.34528 5.36627 5.43905 5.48467 5.54670 5.61709 5.69690 5.72343 6.09840 6.28719 6.72414 7.11550 7.36320 7.46891 8.09789 8.34566 9.31936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.005964 B = 0.004698 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4693.997342 B = 5958.371551 C = 9899.209889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.191 3.809 3 C -0.307 4.307 4 C 0.385 3.615 5 O -0.565 6.565 6 C -0.350 4.350 7 C 0.568 3.432 8 O -0.567 6.567 9 N -0.705 5.705 10 C 0.154 3.846 11 H 0.044 0.956 12 C 0.150 3.850 13 N -0.743 5.743 14 C -0.242 4.242 15 H 0.080 0.920 16 C -0.071 4.071 17 N -0.969 5.969 18 Si 0.972 3.028 19 H -0.284 1.284 20 H -0.300 1.300 21 H -0.271 1.271 22 C -0.078 4.078 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.095 4.095 28 C 0.221 3.779 29 N -0.549 5.549 30 H 0.448 0.552 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.157 0.843 35 H 0.405 0.595 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.373 0.627 39 H 0.249 0.751 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.073 0.927 48 H 0.051 0.949 49 H 0.039 0.961 50 H 0.031 0.969 51 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 -2.545 -17.886 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 C -0.330 4.330 4 C 0.278 3.722 5 O -0.453 6.453 6 C -0.361 4.361 7 C 0.357 3.643 8 O -0.447 6.447 9 N -0.357 5.357 10 C 0.049 3.951 11 H 0.062 0.938 12 C 0.023 3.977 13 N -0.386 5.386 14 C -0.373 4.373 15 H 0.098 0.902 16 C -0.264 4.264 17 N -0.619 5.619 18 Si 0.801 3.199 19 H -0.211 1.211 20 H -0.227 1.227 21 H -0.197 1.197 22 C -0.098 4.098 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.133 4.133 28 C 0.086 3.914 29 N -0.156 5.156 30 H 0.291 0.709 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.174 0.826 35 H 0.242 0.758 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.204 0.796 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.822 -1.438 -17.853 21.461 hybrid contribution -0.077 -0.441 1.461 1.528 sum -11.900 -1.879 -16.391 20.342 Atomic orbital electron populations 1.21301 0.83680 1.06974 1.05962 1.20837 0.96962 0.84265 0.89705 1.22131 0.93950 0.99614 1.17288 1.18941 0.90417 0.87710 0.75162 1.90756 1.71747 1.35450 1.47340 1.22300 0.93735 0.96355 1.23687 1.17849 0.87252 0.83434 0.75778 1.90796 1.67036 1.35845 1.50976 1.45684 1.07139 1.07549 1.75370 1.21080 0.79916 0.97523 0.96601 0.93775 1.21122 0.96580 0.93855 0.86100 1.42557 1.58173 1.22130 1.15694 1.19600 1.23166 0.97142 0.97416 0.90186 1.25512 1.00751 1.01112 0.98980 1.69843 1.37806 1.35704 1.18584 0.85247 0.77267 0.79741 0.77655 1.21085 1.22702 1.19665 1.21417 0.96375 0.98135 0.93842 1.21619 0.93762 1.01881 0.98073 1.21483 1.00815 0.97600 0.94793 1.21535 0.94979 0.97767 1.01189 1.21525 0.96488 1.01503 0.95679 1.21432 0.99189 0.96497 0.96197 1.22548 0.83524 0.99616 0.85735 1.40949 1.05146 1.10268 1.59223 0.70930 0.87612 0.87863 0.87057 0.82568 0.75792 0.93531 0.94486 0.79553 0.94232 0.89293 0.93705 0.90796 0.90668 0.90904 0.90424 0.93457 0.90857 0.92998 0.94252 0.95002 0.77990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.31 10.03 71.24 0.71 0.41 16 2 C 0.19 2.49 6.79 41.21 0.28 2.77 16 3 C -0.31 -7.51 9.57 22.34 0.21 -7.30 16 4 C 0.38 14.57 6.96 25.44 0.18 14.74 16 5 O -0.56 -28.34 16.41 13.52 0.22 -28.12 16 6 C -0.35 -11.58 6.05 -18.63 -0.11 -11.69 16 7 C 0.57 22.74 6.12 86.62 0.53 23.27 16 8 O -0.57 -28.62 12.69 15.06 0.19 -28.43 16 9 N -0.71 -23.84 4.36 -445.93 -1.94 -25.78 16 10 C 0.15 5.53 2.00 44.99 0.09 5.62 16 11 H 0.04 1.97 7.58 -2.39 -0.02 1.95 16 12 C 0.15 5.66 5.31 86.38 0.46 6.12 16 13 N -0.74 -36.16 5.43 -343.43 -1.87 -38.02 16 14 C -0.24 -12.79 9.99 84.03 0.84 -11.96 16 15 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 16 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 17 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 18 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 C -0.08 -2.27 1.96 -10.80 -0.02 -2.29 16 23 C -0.12 -3.05 4.85 30.59 0.15 -2.90 16 24 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 25 C -0.12 -2.59 5.92 30.59 0.18 -2.41 16 26 C -0.11 -2.89 5.92 30.58 0.18 -2.71 16 27 C -0.10 -3.12 3.72 30.58 0.11 -3.00 16 28 C 0.22 4.14 10.74 84.25 0.90 5.04 16 29 N -0.55 -5.61 5.16 -182.38 -0.94 -6.55 16 30 H 0.45 0.08 8.70 -92.71 -0.81 -0.72 16 31 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.10 0.20 8.05 -2.39 -0.02 0.19 16 33 H 0.11 -0.37 8.12 -2.39 -0.02 -0.39 16 34 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.41 11.27 6.68 -92.71 -0.62 10.65 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.42 6.71 -2.39 -0.02 1.40 16 38 H 0.37 20.12 7.33 -92.70 -0.68 19.44 16 39 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.88 6.54 -2.39 -0.02 1.86 16 43 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.04 1.44 5.78 -2.39 -0.01 1.42 16 50 H 0.03 1.26 7.53 -2.39 -0.02 1.25 16 51 H 0.20 2.50 6.42 -2.91 -0.02 2.49 16 Total: -1.00 -94.44 400.41 2.18 -92.26 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -1.13 Total: 37.79 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.35 Total: 8.16 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -4.47 Total: -128.02 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: 0.41 Total: -56.55 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -94.44 2.18 -92.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698883941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.583 kcal (2) G-P(sol) polarization free energy of solvation -94.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds