Wall clock time and date at job start Wed Apr 1 2020 04:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34865 * 119.09870 * 2 1 4 4 C 1.41668 * 119.33795 * 179.73358 * 3 2 1 5 5 O 1.22091 * 121.06931 * 180.27678 * 4 3 2 6 6 C 1.47100 * 117.86475 * 0.47430 * 4 3 2 7 7 C 1.47286 * 120.88472 * 179.80101 * 6 4 3 8 8 O 1.21623 * 119.99941 * 359.72110 * 7 6 4 9 9 N 1.34777 * 120.00030 * 179.44748 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27788 * 9 7 6 11 11 H 1.08999 * 109.46902 * 324.99605 * 10 9 7 12 12 C 1.53001 * 109.46711 * 204.99467 * 10 9 7 13 13 N 1.46507 * 109.46859 * 55.00199 * 12 10 9 14 14 C 1.36936 * 119.99340 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00507 * 0.02562 * 14 13 12 16 16 C 1.38823 * 119.99415 * 179.97438 * 14 13 12 17 17 N 1.31613 * 120.00053 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99770 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47392 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47473 * 120.00028 * 18 16 14 21 21 H 1.48498 * 109.47100 * 240.00003 * 18 16 14 22 22 C 1.52995 * 109.47009 * 84.99752 * 10 9 7 23 23 C 1.52995 * 109.47424 * 59.99993 * 22 10 9 24 24 C 1.52998 * 109.47424 * 179.97438 * 23 22 10 25 25 C 1.53005 * 109.47159 * 59.99772 * 24 23 22 26 26 C 1.52995 * 109.47138 * 300.00403 * 25 24 23 27 27 C 1.53001 * 109.47151 * 299.99445 * 22 10 9 28 28 C 1.37990 * 118.23152 * 359.52934 * 6 4 3 29 29 N 1.34342 * 120.37549 * 0.22758 * 28 6 4 30 30 H 0.97002 * 118.80889 * 180.02562 * 29 28 6 31 31 H 1.08994 * 109.47692 * 270.02611 * 1 2 3 32 32 H 1.08998 * 109.46977 * 30.02877 * 1 2 3 33 33 H 1.08998 * 109.46636 * 150.02391 * 1 2 3 34 34 H 1.08001 * 120.33066 * 359.97424 * 3 2 1 35 35 H 0.97000 * 119.99736 * 0.27062 * 9 7 6 36 36 H 1.09005 * 109.46828 * 174.99372 * 12 10 9 37 37 H 1.08999 * 109.47445 * 295.00233 * 12 10 9 38 38 H 0.96992 * 120.00388 * 359.97438 * 13 12 10 39 39 H 0.97006 * 120.00177 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.46569 * 179.97438 * 22 10 9 41 41 H 1.08998 * 109.47245 * 299.99616 * 23 22 10 42 42 H 1.09001 * 109.47411 * 59.99622 * 23 22 10 43 43 H 1.08998 * 109.47434 * 300.00158 * 24 23 22 44 44 H 1.08999 * 109.47409 * 180.02562 * 24 23 22 45 45 H 1.08993 * 109.47142 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.46633 * 59.99894 * 25 24 23 47 47 H 1.08998 * 109.47245 * 299.99758 * 26 25 24 48 48 H 1.09001 * 109.47411 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47169 * 300.00251 * 27 22 10 50 50 H 1.08998 * 109.46912 * 60.00755 * 27 22 10 51 51 H 1.08000 * 119.81313 * 180.24783 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0057 5 8 4.2052 2.2327 0.0110 6 6 4.2725 -0.1132 0.0007 7 6 5.7437 -0.1846 0.0018 8 8 6.4021 0.8380 0.0018 9 7 6.3601 -1.3831 0.0084 10 6 7.8234 -1.4541 0.0157 11 1 8.2299 -0.6327 -0.5744 12 6 8.2723 -2.7865 -0.5876 13 7 7.6865 -2.9405 -1.9217 14 6 7.9499 -4.0636 -2.6595 15 1 8.5891 -4.8360 -2.2579 16 6 7.3945 -4.2098 -3.9233 17 7 6.6152 -3.2687 -4.4125 18 14 7.7531 -5.7421 -4.9296 19 1 8.6507 -6.6409 -4.1601 20 1 6.4810 -6.4484 -5.2266 21 1 8.4133 -5.3553 -6.2022 22 6 8.3320 -1.3488 1.4548 23 6 7.7614 -2.5017 2.2830 24 6 8.2704 -2.3968 3.7220 25 6 7.8220 -1.0643 4.3258 26 6 8.3926 0.0886 3.4975 27 6 7.8831 -0.0163 2.0581 28 6 3.5076 -1.2617 0.0007 29 7 2.1664 -1.1847 0.0006 30 1 1.6510 -2.0064 0.0010 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3632 -0.8902 -0.5135 34 1 1.6136 2.1083 -0.0004 35 1 5.8350 -2.1986 0.0085 36 1 9.3596 -2.8027 -0.6642 37 1 7.9407 -3.6049 0.0514 38 1 7.1122 -2.2470 -2.2822 39 1 6.2267 -3.3710 -5.2955 40 1 9.4207 -1.4021 1.4602 41 1 6.6727 -2.4489 2.2777 42 1 8.0812 -3.4510 1.8532 43 1 9.3591 -2.4498 3.7271 44 1 7.8643 -3.2184 4.3120 45 1 8.1851 -0.9894 5.3507 46 1 6.7333 -1.0113 4.3207 47 1 9.4813 0.0356 3.5025 48 1 8.0728 1.0379 3.9274 49 1 8.2897 0.8050 1.4681 50 1 6.7944 0.0365 2.0528 51 1 3.9900 -2.2280 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698883942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:02 Heat of formation + Delta-G solvation = -47.921906 kcal Electronic energy + Delta-G solvation = -32004.004388 eV Core-core repulsion = 27903.079559 eV Total energy + Delta-G solvation = -4100.924830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.02286 -39.76537 -37.94553 -37.28570 -35.51721 -33.72184 -33.34428 -31.80678 -30.86127 -30.49771 -30.41799 -28.26089 -26.88394 -24.22012 -23.82417 -22.68646 -22.29516 -21.65496 -21.24537 -20.05046 -19.18683 -18.77431 -17.49251 -17.15752 -16.21800 -15.99988 -15.63616 -15.49179 -15.14914 -14.61927 -14.56049 -14.35710 -13.98243 -13.91140 -13.64695 -13.39272 -13.26029 -13.15374 -13.09460 -12.98401 -12.90651 -12.79937 -12.33947 -12.28453 -12.13387 -11.81042 -11.56821 -10.97242 -10.94170 -10.91586 -10.81564 -10.70740 -10.29698 -10.13184 -9.97948 -9.77103 -9.64370 -9.56446 -9.52960 -8.98795 -8.89284 -8.42633 -8.03095 -6.96268 -5.80091 -3.09570 0.87930 1.29229 2.57733 3.29327 3.38430 3.45250 3.47237 3.58757 4.06489 4.07814 4.43121 4.54071 4.63262 4.85499 4.87717 4.91738 4.94772 4.97308 5.01141 5.28617 5.36099 5.39580 5.42392 5.52033 5.54675 5.60307 5.64996 5.71667 5.74899 5.79271 5.81917 5.92422 6.03384 6.07682 6.16672 6.22561 6.27060 6.32966 6.38044 6.42198 6.52845 6.57104 6.61294 6.65282 6.72227 6.77558 6.83408 7.10556 7.66389 8.04526 8.27381 8.37712 8.82944 9.49660 10.07172 10.42744 11.42006 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006641 B = 0.004498 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4215.174930 B = 6223.636912 C = 9219.442105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 C -0.272 4.272 4 C 0.409 3.591 5 O -0.481 6.481 6 C -0.292 4.292 7 C 0.573 3.427 8 O -0.513 6.513 9 N -0.713 5.713 10 C 0.146 3.854 11 H 0.087 0.913 12 C 0.143 3.857 13 N -0.731 5.731 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.093 4.093 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.105 4.105 28 C 0.174 3.826 29 N -0.578 5.578 30 H 0.420 0.580 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.393 0.607 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.386 0.614 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 1.044 16.554 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.047 3.953 3 C -0.297 4.297 4 C 0.294 3.706 5 O -0.361 6.361 6 C -0.303 4.303 7 C 0.359 3.641 8 O -0.388 6.388 9 N -0.365 5.365 10 C 0.041 3.959 11 H 0.105 0.895 12 C 0.015 3.985 13 N -0.376 5.376 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.113 4.113 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.142 4.142 28 C 0.043 3.957 29 N -0.185 5.185 30 H 0.256 0.744 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.167 0.833 35 H 0.228 0.772 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.221 0.779 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.104 2.250 16.497 20.013 hybrid contribution -0.542 -1.622 -0.914 1.939 sum -11.646 0.628 15.583 19.464 Atomic orbital electron populations 1.21084 0.88091 1.04897 1.04129 1.20253 0.94684 0.85626 0.94762 1.22252 0.96446 0.97187 1.13785 1.18149 0.88165 0.87999 0.76265 1.90813 1.69956 1.33244 1.42122 1.22587 0.94871 0.94889 1.17961 1.17353 0.85897 0.83879 0.76937 1.90830 1.65605 1.34008 1.48345 1.45819 1.07462 1.07490 1.75734 1.21243 0.79489 0.99965 0.95203 0.89486 1.21039 0.96700 0.92808 0.87953 1.42389 1.58519 1.23075 1.13647 1.19265 1.24272 0.96589 0.96991 0.91145 1.24737 1.00285 0.98204 0.97618 1.69687 1.36540 1.33556 1.18072 0.86154 0.77306 0.82541 0.80379 1.20572 1.22002 1.21881 1.21519 1.00138 0.95324 0.94277 1.21617 1.00476 0.98578 0.94454 1.21520 1.00737 0.96802 0.96396 1.21517 1.00463 0.95196 0.98279 1.21581 1.00140 0.97662 0.96382 1.21623 1.01393 0.96847 0.94366 1.22290 0.82505 1.00280 0.90658 1.40688 1.06004 1.08871 1.62892 0.74380 0.89399 0.88842 0.90455 0.83304 0.77204 0.95090 0.95405 0.77948 0.93597 0.90698 0.92287 0.91368 0.92218 0.92610 0.92829 0.92489 0.92468 0.92630 0.91287 0.91879 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.03 36.01 0.36 -0.11 16 2 C 0.15 1.23 6.79 -82.13 -0.56 0.67 16 3 C -0.27 -3.27 9.57 -39.47 -0.38 -3.65 16 4 C 0.41 7.05 6.96 -34.68 -0.24 6.81 16 5 O -0.48 -10.62 16.41 -15.18 -0.25 -10.87 16 6 C -0.29 -4.56 6.05 -102.72 -0.62 -5.18 16 7 C 0.57 10.46 6.13 -12.58 -0.08 10.38 16 8 O -0.51 -11.42 12.69 -14.76 -0.19 -11.61 16 9 N -0.71 -11.41 3.59 -54.92 -0.20 -11.60 16 10 C 0.15 2.48 2.16 -67.93 -0.15 2.33 16 11 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 12 C 0.14 2.71 5.60 -4.04 -0.02 2.69 16 13 N -0.73 -17.66 5.43 -59.90 -0.33 -17.98 16 14 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 18 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.09 -1.32 2.07 -90.62 -0.19 -1.51 16 23 C -0.11 -1.40 4.70 -26.73 -0.13 -1.52 16 24 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 25 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 26 C -0.12 -1.52 5.92 -26.71 -0.16 -1.68 16 27 C -0.10 -1.59 3.73 -26.70 -0.10 -1.69 16 28 C 0.17 1.80 10.74 -16.54 -0.18 1.62 16 29 N -0.58 -4.10 5.16 -9.00 -0.05 -4.15 16 30 H 0.42 1.31 8.70 -40.82 -0.35 0.96 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.33 8.05 -51.93 -0.42 -0.09 16 33 H 0.08 0.17 8.12 -51.93 -0.42 -0.25 16 34 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.39 5.56 6.68 -40.82 -0.27 5.29 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 38 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.72 7.60 -51.93 -0.39 0.32 16 42 H 0.07 0.85 6.32 -51.93 -0.33 0.52 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 1.21 7.53 -51.93 -0.39 0.82 16 50 H 0.06 1.06 5.77 -51.93 -0.30 0.76 16 51 H 0.17 1.36 6.42 -52.49 -0.34 1.02 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -38.15 398.76 -10.30 -48.45 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -8.01 Total: 12.49 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.00 Total: -0.75 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.16 Total: -60.48 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.44 Total: -22.47 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.15 -10.30 -48.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698883942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.526 kcal (2) G-P(sol) polarization free energy of solvation -38.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds