Wall clock time and date at job start Wed Apr 1 2020 04:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34865 * 119.09870 * 2 1 4 4 C 1.41668 * 119.33795 * 179.73358 * 3 2 1 5 5 O 1.22091 * 121.06931 * 180.27678 * 4 3 2 6 6 C 1.47100 * 117.86475 * 0.47430 * 4 3 2 7 7 C 1.47286 * 120.88472 * 179.80101 * 6 4 3 8 8 O 1.21623 * 119.99941 * 359.72110 * 7 6 4 9 9 N 1.34777 * 120.00030 * 179.44748 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27788 * 9 7 6 11 11 H 1.08999 * 109.46902 * 324.99605 * 10 9 7 12 12 C 1.53001 * 109.46711 * 204.99467 * 10 9 7 13 13 N 1.46507 * 109.46859 * 55.00199 * 12 10 9 14 14 C 1.36936 * 119.99340 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00507 * 0.02562 * 14 13 12 16 16 C 1.38823 * 119.99415 * 179.97438 * 14 13 12 17 17 N 1.31613 * 120.00053 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99770 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47392 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47473 * 120.00028 * 18 16 14 21 21 H 1.48498 * 109.47100 * 240.00003 * 18 16 14 22 22 C 1.52995 * 109.47009 * 84.99752 * 10 9 7 23 23 C 1.52995 * 109.47424 * 59.99993 * 22 10 9 24 24 C 1.52998 * 109.47424 * 179.97438 * 23 22 10 25 25 C 1.53005 * 109.47159 * 59.99772 * 24 23 22 26 26 C 1.52995 * 109.47138 * 300.00403 * 25 24 23 27 27 C 1.53001 * 109.47151 * 299.99445 * 22 10 9 28 28 C 1.37990 * 118.23152 * 359.52934 * 6 4 3 29 29 N 1.34342 * 120.37549 * 0.22758 * 28 6 4 30 30 H 0.97002 * 118.80889 * 180.02562 * 29 28 6 31 31 H 1.08994 * 109.47692 * 270.02611 * 1 2 3 32 32 H 1.08998 * 109.46977 * 30.02877 * 1 2 3 33 33 H 1.08998 * 109.46636 * 150.02391 * 1 2 3 34 34 H 1.08001 * 120.33066 * 359.97424 * 3 2 1 35 35 H 0.97000 * 119.99736 * 0.27062 * 9 7 6 36 36 H 1.09005 * 109.46828 * 174.99372 * 12 10 9 37 37 H 1.08999 * 109.47445 * 295.00233 * 12 10 9 38 38 H 0.96992 * 120.00388 * 359.97438 * 13 12 10 39 39 H 0.97006 * 120.00177 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.46569 * 179.97438 * 22 10 9 41 41 H 1.08998 * 109.47245 * 299.99616 * 23 22 10 42 42 H 1.09001 * 109.47411 * 59.99622 * 23 22 10 43 43 H 1.08998 * 109.47434 * 300.00158 * 24 23 22 44 44 H 1.08999 * 109.47409 * 180.02562 * 24 23 22 45 45 H 1.08993 * 109.47142 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.46633 * 59.99894 * 25 24 23 47 47 H 1.08998 * 109.47245 * 299.99758 * 26 25 24 48 48 H 1.09001 * 109.47411 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47169 * 300.00251 * 27 22 10 50 50 H 1.08998 * 109.46912 * 60.00755 * 27 22 10 51 51 H 1.08000 * 119.81313 * 180.24783 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0057 5 8 4.2052 2.2327 0.0110 6 6 4.2725 -0.1132 0.0007 7 6 5.7437 -0.1846 0.0018 8 8 6.4021 0.8380 0.0018 9 7 6.3601 -1.3831 0.0084 10 6 7.8234 -1.4541 0.0157 11 1 8.2299 -0.6327 -0.5744 12 6 8.2723 -2.7865 -0.5876 13 7 7.6865 -2.9405 -1.9217 14 6 7.9499 -4.0636 -2.6595 15 1 8.5891 -4.8360 -2.2579 16 6 7.3945 -4.2098 -3.9233 17 7 6.6152 -3.2687 -4.4125 18 14 7.7531 -5.7421 -4.9296 19 1 8.6507 -6.6409 -4.1601 20 1 6.4810 -6.4484 -5.2266 21 1 8.4133 -5.3553 -6.2022 22 6 8.3320 -1.3488 1.4548 23 6 7.7614 -2.5017 2.2830 24 6 8.2704 -2.3968 3.7220 25 6 7.8220 -1.0643 4.3258 26 6 8.3926 0.0886 3.4975 27 6 7.8831 -0.0163 2.0581 28 6 3.5076 -1.2617 0.0007 29 7 2.1664 -1.1847 0.0006 30 1 1.6510 -2.0064 0.0010 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3632 -0.8902 -0.5135 34 1 1.6136 2.1083 -0.0004 35 1 5.8350 -2.1986 0.0085 36 1 9.3596 -2.8027 -0.6642 37 1 7.9407 -3.6049 0.0514 38 1 7.1122 -2.2470 -2.2822 39 1 6.2267 -3.3710 -5.2955 40 1 9.4207 -1.4021 1.4602 41 1 6.6727 -2.4489 2.2777 42 1 8.0812 -3.4510 1.8532 43 1 9.3591 -2.4498 3.7271 44 1 7.8643 -3.2184 4.3120 45 1 8.1851 -0.9894 5.3507 46 1 6.7333 -1.0113 4.3207 47 1 9.4813 0.0356 3.5025 48 1 8.0728 1.0379 3.9274 49 1 8.2897 0.8050 1.4681 50 1 6.7944 0.0365 2.0528 51 1 3.9900 -2.2280 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698883942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:01 Heat of formation + Delta-G solvation = -74.331754 kcal Electronic energy + Delta-G solvation = -32005.149605 eV Core-core repulsion = 27903.079559 eV Total energy + Delta-G solvation = -4102.070047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.05838 -41.00164 -39.13715 -38.53202 -37.08751 -35.29114 -34.39501 -33.09852 -32.42473 -31.69666 -31.55198 -29.10621 -28.33430 -25.67860 -25.08175 -23.98755 -23.32911 -22.94914 -22.39542 -21.28832 -20.38086 -19.89467 -19.06449 -18.52875 -17.28281 -17.17130 -16.95468 -16.73114 -16.42198 -16.17026 -15.74518 -15.51099 -15.32677 -15.08112 -14.86609 -14.74484 -14.67513 -14.43864 -14.20077 -13.93542 -13.76276 -13.69237 -13.42730 -13.40019 -13.19461 -13.03099 -12.90912 -12.80959 -12.57422 -12.20234 -12.00939 -11.96571 -11.91297 -11.73630 -11.32665 -11.19529 -10.97930 -10.95844 -10.69237 -10.43894 -10.26410 -9.81644 -9.15165 -8.96948 -7.90861 -5.20512 -0.14533 0.35956 1.48978 1.52029 1.60684 1.78959 2.01002 2.28117 2.58375 2.86249 3.35593 3.43346 3.63358 3.65428 3.78103 3.82184 3.89551 3.99764 4.12503 4.20249 4.29614 4.29749 4.42385 4.49687 4.52596 4.61418 4.68467 4.70818 4.74590 4.76854 4.81118 4.82956 4.86187 4.94808 5.07314 5.18231 5.18681 5.25260 5.28248 5.32830 5.35916 5.36770 5.44923 5.54794 5.55812 5.63173 5.70097 5.73098 6.10099 6.29034 6.73931 7.12142 7.36632 7.48756 8.10225 8.34815 9.32203 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006641 B = 0.004498 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4215.174930 B = 6223.636912 C = 9219.442105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.191 3.809 3 C -0.307 4.307 4 C 0.385 3.615 5 O -0.565 6.565 6 C -0.349 4.349 7 C 0.568 3.432 8 O -0.568 6.568 9 N -0.700 5.700 10 C 0.154 3.846 11 H 0.044 0.956 12 C 0.148 3.852 13 N -0.742 5.742 14 C -0.238 4.238 15 H 0.081 0.919 16 C -0.072 4.072 17 N -0.969 5.969 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.303 1.303 22 C -0.083 4.083 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.096 4.096 28 C 0.220 3.780 29 N -0.549 5.549 30 H 0.448 0.552 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.405 0.595 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.373 0.627 39 H 0.249 0.751 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.050 0.950 49 H 0.030 0.970 50 H 0.042 0.958 51 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 -3.313 18.439 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 C -0.330 4.330 4 C 0.278 3.722 5 O -0.453 6.453 6 C -0.360 4.360 7 C 0.357 3.643 8 O -0.448 6.448 9 N -0.352 5.352 10 C 0.049 3.951 11 H 0.062 0.938 12 C 0.022 3.978 13 N -0.385 5.385 14 C -0.370 4.370 15 H 0.098 0.902 16 C -0.264 4.264 17 N -0.620 5.620 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.217 1.217 21 H -0.231 1.231 22 C -0.103 4.103 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.133 4.133 28 C 0.085 3.915 29 N -0.156 5.156 30 H 0.291 0.709 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.174 0.826 35 H 0.241 0.759 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.205 0.795 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -13.475 -2.216 18.430 22.938 hybrid contribution 0.065 -0.352 -1.479 1.521 sum -13.410 -2.568 16.951 21.766 Atomic orbital electron populations 1.21298 0.83696 1.06727 1.06197 1.20833 0.96950 0.84264 0.89707 1.22129 0.93978 0.99599 1.17319 1.18939 0.90399 0.87725 0.75162 1.90756 1.71740 1.35462 1.47340 1.22303 0.93790 0.96296 1.23567 1.17828 0.87202 0.83459 0.75792 1.90796 1.67034 1.35868 1.51072 1.45621 1.07002 1.07416 1.75186 1.21041 0.80183 0.97451 0.96435 0.93776 1.21156 0.96285 0.94290 0.86105 1.42569 1.58525 1.22107 1.15326 1.19672 1.23128 0.97033 0.97137 0.90153 1.25502 1.00879 1.01085 0.98960 1.69854 1.38275 1.35674 1.18176 0.85118 0.77168 0.79429 0.78264 1.18855 1.21747 1.23118 1.21434 1.00400 0.95917 0.92591 1.21588 1.00592 0.97205 0.95221 1.21506 1.01170 0.97121 0.95194 1.21494 1.00177 0.94440 0.98902 1.21565 1.00690 0.98640 0.94628 1.21450 0.99897 0.96149 0.95848 1.22534 0.83534 0.99603 0.85861 1.40941 1.05142 1.10258 1.59238 0.70940 0.86871 0.88216 0.87457 0.82612 0.75868 0.95221 0.92640 0.79534 0.94255 0.90178 0.91991 0.90775 0.91639 0.90467 0.90822 0.92864 0.91567 0.93108 0.95139 0.93896 0.78076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.30 10.03 71.24 0.71 0.41 16 2 C 0.19 2.47 6.79 41.21 0.28 2.75 16 3 C -0.31 -7.50 9.57 22.34 0.21 -7.29 16 4 C 0.38 14.51 6.96 25.44 0.18 14.69 16 5 O -0.56 -28.28 16.41 13.52 0.22 -28.06 16 6 C -0.35 -11.46 6.05 -18.63 -0.11 -11.57 16 7 C 0.57 22.54 6.13 86.62 0.53 23.07 16 8 O -0.57 -28.51 12.69 15.03 0.19 -28.32 16 9 N -0.70 -23.24 3.59 -445.93 -1.60 -24.85 16 10 C 0.15 5.48 2.16 44.99 0.10 5.58 16 11 H 0.04 1.95 7.58 -2.39 -0.02 1.93 16 12 C 0.15 5.55 5.60 86.38 0.48 6.03 16 13 N -0.74 -35.90 5.43 -343.42 -1.87 -37.77 16 14 C -0.24 -12.55 9.99 84.04 0.84 -11.71 16 15 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -3.97 5.50 84.87 0.47 -3.50 16 17 N -0.97 -57.87 13.06 21.65 0.28 -57.59 16 18 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 C -0.08 -2.42 2.07 -10.80 -0.02 -2.44 16 23 C -0.11 -2.44 4.70 30.59 0.14 -2.30 16 24 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 25 C -0.11 -2.29 5.92 30.59 0.18 -2.10 16 26 C -0.12 -3.00 5.92 30.61 0.18 -2.82 16 27 C -0.10 -3.12 3.73 30.61 0.11 -3.00 16 28 C 0.22 4.09 10.74 84.25 0.90 4.99 16 29 N -0.55 -5.55 5.16 -182.38 -0.94 -6.49 16 30 H 0.45 0.04 8.70 -92.71 -0.81 -0.76 16 31 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.10 0.28 8.05 -2.39 -0.02 0.26 16 33 H 0.11 -0.25 8.12 -2.39 -0.02 -0.27 16 34 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.40 11.12 6.68 -92.71 -0.62 10.51 16 36 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 1.83 6.17 -2.39 -0.01 1.82 16 38 H 0.37 20.00 7.33 -92.71 -0.68 19.32 16 39 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 40 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.06 1.36 7.60 -2.39 -0.02 1.35 16 42 H 0.07 1.60 6.32 -2.39 -0.02 1.59 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.03 1.20 7.53 -2.39 -0.02 1.18 16 50 H 0.04 1.56 5.77 -2.39 -0.01 1.55 16 51 H 0.20 2.48 6.42 -2.91 -0.02 2.47 16 Total: -1.00 -94.08 398.76 2.56 -91.53 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -1.13 Total: 36.30 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.37 Total: 8.88 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -4.13 Total: -126.70 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: 0.41 Total: -56.38 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -94.08 2.56 -91.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698883942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.193 kcal (2) G-P(sol) polarization free energy of solvation -94.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds