Wall clock time and date at job start Wed Apr 1 2020 04:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34863 * 119.10397 * 2 1 4 4 C 1.41669 * 119.33749 * 179.73987 * 3 2 1 5 5 O 1.22089 * 121.06415 * 180.27061 * 4 3 2 6 6 C 1.47091 * 117.86547 * 0.51661 * 4 3 2 7 7 C 1.47282 * 120.88271 * 179.78612 * 6 4 3 8 8 O 1.21622 * 120.00378 * 33.82879 * 7 6 4 9 9 N 1.34785 * 120.00224 * 213.83671 * 7 6 4 10 10 C 1.46923 * 120.62481 * 356.59978 * 9 7 6 11 11 C 1.53197 * 108.77441 * 126.41675 * 10 9 7 12 12 C 1.53037 * 109.33848 * 54.61641 * 11 10 9 13 13 C 1.53037 * 109.54058 * 298.68406 * 12 11 10 14 14 H 1.08993 * 109.49683 * 301.35144 * 13 12 11 15 15 C 1.53002 * 109.49937 * 181.28303 * 13 12 11 16 16 H 1.08995 * 109.46952 * 300.06516 * 15 13 12 17 17 C 1.53005 * 109.46709 * 60.06577 * 15 13 12 18 18 N 1.46498 * 109.47308 * 180.02562 * 15 13 12 19 19 C 1.36936 * 120.00108 * 155.00190 * 18 15 13 20 20 H 1.08002 * 119.99696 * 359.97438 * 19 18 15 21 21 C 1.38807 * 119.99904 * 180.02562 * 19 18 15 22 22 N 1.31623 * 119.99838 * 179.72487 * 21 19 18 23 23 Si 1.86800 * 120.00185 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46805 * 90.00287 * 23 21 19 25 25 H 1.48494 * 109.47423 * 209.99950 * 23 21 19 26 26 H 1.48497 * 109.47281 * 330.00817 * 23 21 19 27 27 C 1.46921 * 120.63389 * 176.62362 * 9 7 6 28 28 C 1.37994 * 118.23432 * 359.50302 * 6 4 3 29 29 N 1.34345 * 120.37323 * 0.23594 * 28 6 4 30 30 C 1.46492 * 118.80316 * 180.02562 * 29 28 6 31 31 H 1.08999 * 109.46972 * 264.08546 * 1 2 3 32 32 H 1.08998 * 109.46618 * 24.08461 * 1 2 3 33 33 H 1.09001 * 109.47084 * 144.08173 * 1 2 3 34 34 H 1.08007 * 120.32890 * 0.02562 * 3 2 1 35 35 H 1.09008 * 109.58779 * 246.20404 * 10 9 7 36 36 H 1.09005 * 109.59105 * 6.62577 * 10 9 7 37 37 H 1.08999 * 109.49809 * 174.58540 * 11 10 9 38 38 H 1.08998 * 109.49644 * 294.68244 * 11 10 9 39 39 H 1.08999 * 109.48332 * 178.64414 * 12 11 10 40 40 H 1.09000 * 109.43397 * 58.69061 * 12 11 10 41 41 H 1.08998 * 109.46956 * 180.02562 * 17 15 13 42 42 H 1.08998 * 109.47269 * 300.00073 * 17 15 13 43 43 H 1.08993 * 109.46943 * 60.00262 * 17 15 13 44 44 H 0.97005 * 119.99825 * 334.99867 * 18 15 13 45 45 H 0.97003 * 119.99664 * 179.97438 * 22 21 19 46 46 H 1.09005 * 109.58732 * 113.79686 * 27 9 7 47 47 H 1.08999 * 109.58761 * 353.37339 * 27 9 7 48 48 H 1.08004 * 119.81364 * 180.25097 * 28 6 4 49 49 H 1.08996 * 109.47261 * 95.95704 * 30 29 28 50 50 H 1.09000 * 109.46884 * 215.95193 * 30 29 28 51 51 H 1.08993 * 109.47526 * 335.95317 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5797 1.1841 0.0056 5 8 4.2054 2.2325 0.0107 6 6 4.2725 -0.1134 -0.0005 7 6 5.7436 -0.1849 0.0001 8 8 6.3931 0.6565 0.5911 9 7 6.3701 -1.1827 -0.6545 10 6 5.5990 -2.2475 -1.3104 11 6 6.0438 -2.3490 -2.7729 12 6 7.5605 -2.5455 -2.8289 13 6 8.2566 -1.3394 -2.1943 14 1 7.9689 -0.4322 -2.7255 15 6 9.7733 -1.5220 -2.2795 16 1 10.0604 -2.4293 -1.7481 17 6 10.1915 -1.6363 -3.7468 18 7 10.4391 -0.3675 -1.6712 19 6 11.7046 -0.4956 -1.1641 20 1 12.2117 -1.4480 -1.2122 21 6 12.3353 0.5982 -0.5874 22 7 13.5496 0.4736 -0.0951 23 14 11.4579 2.2452 -0.5036 24 1 10.6903 2.3331 0.7647 25 1 12.4577 3.3419 -0.5540 26 1 10.5279 2.3698 -1.6545 27 6 7.8370 -1.2265 -0.7253 28 6 3.5076 -1.2619 -0.0008 29 7 2.1663 -1.1848 -0.0004 30 6 1.3880 -2.4258 -0.0001 31 1 -0.3633 -0.1059 1.0222 32 1 -0.3632 0.9382 -0.4194 33 1 -0.3633 -0.8323 -0.6029 34 1 1.6137 2.1083 0.0004 35 1 5.7833 -3.1960 -0.8058 36 1 4.5363 -2.0088 -1.2674 37 1 5.5493 -3.1977 -3.2455 38 1 5.7765 -1.4325 -3.2989 39 1 7.8764 -2.6421 -3.8676 40 1 7.8295 -3.4493 -2.2822 41 1 11.2719 -1.7668 -3.8075 42 1 9.6961 -2.4950 -4.2000 43 1 9.9044 -0.7290 -4.2781 44 1 9.9835 0.4878 -1.6278 45 1 13.9904 1.2381 0.3076 46 1 8.2038 -2.0917 -0.1729 47 1 8.2509 -0.3141 -0.2961 48 1 3.9898 -2.2283 -0.0011 49 1 1.1049 -2.6770 1.0221 50 1 0.4900 -2.2916 -0.6032 51 1 1.9898 -3.2322 -0.4190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698929475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:26 Heat of formation + Delta-G solvation = 4.367223 kcal Electronic energy + Delta-G solvation = -31811.569768 eV Core-core repulsion = 27712.912365 eV Total energy + Delta-G solvation = -4098.657403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69294 -39.90144 -38.26072 -37.38824 -35.62505 -34.00454 -33.18515 -32.51903 -31.76617 -30.27989 -29.01069 -28.02551 -27.33643 -25.90644 -24.23061 -23.78149 -22.90318 -21.95486 -21.01918 -19.80385 -19.46260 -18.39236 -17.57025 -17.28699 -16.89461 -16.50777 -15.84306 -15.59709 -15.01805 -14.82315 -14.77519 -14.36367 -14.02041 -13.99145 -13.95686 -13.89351 -13.62100 -13.49678 -13.13024 -12.96607 -12.93079 -12.79952 -12.66629 -12.41983 -12.32260 -12.28097 -12.01088 -11.50952 -11.12008 -11.07767 -10.86401 -10.72124 -10.56449 -10.26759 -10.02023 -9.92493 -9.80335 -9.65950 -9.44358 -9.24299 -8.80789 -8.46480 -8.16522 -7.14184 -5.65035 -2.99960 0.63035 0.99971 1.95807 2.89152 3.10027 3.56829 3.60930 3.63600 3.68411 3.69350 3.97136 4.09676 4.27998 4.35867 4.53971 4.58875 4.68816 4.74510 4.75255 4.79595 4.83796 4.88153 4.99652 5.15128 5.19230 5.21865 5.28810 5.38726 5.47378 5.56356 5.63838 5.70132 5.72307 5.86235 5.93972 6.04777 6.07510 6.11707 6.19278 6.22184 6.39497 6.42227 6.43378 6.49408 6.61936 6.74431 6.89728 7.08432 7.56302 8.02651 8.10519 8.45207 8.54320 9.33260 10.06898 10.26137 11.53143 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.003104 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.964768 B = 9019.634982 C =10374.188933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.269 4.269 4 C 0.408 3.592 5 O -0.483 6.483 6 C -0.288 4.288 7 C 0.572 3.428 8 O -0.507 6.507 9 N -0.613 5.613 10 C 0.081 3.919 11 C -0.134 4.134 12 C -0.113 4.113 13 C -0.108 4.108 14 H 0.069 0.931 15 C 0.186 3.814 16 H 0.056 0.944 17 C -0.165 4.165 18 N -0.749 5.749 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.007 3.993 22 N -0.936 5.936 23 Si 0.879 3.121 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.277 1.277 27 C 0.125 3.875 28 C 0.150 3.850 29 N -0.475 5.475 30 C 0.049 3.951 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.152 0.848 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.362 0.638 45 H 0.258 0.742 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.184 0.816 49 H 0.082 0.918 50 H 0.094 0.906 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.693 -13.513 -3.795 37.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 C -0.293 4.293 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.299 4.299 7 C 0.359 3.641 8 O -0.381 6.381 9 N -0.347 5.347 10 C -0.042 4.042 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.076 3.924 16 H 0.074 0.926 17 C -0.225 4.225 18 N -0.392 5.392 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.189 4.189 22 N -0.584 5.584 23 Si 0.709 3.291 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.003 3.997 28 C 0.021 3.979 29 N -0.162 5.162 30 C -0.092 4.092 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.170 0.830 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.195 0.805 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.119 0.881 48 H 0.201 0.799 49 H 0.100 0.900 50 H 0.112 0.888 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -33.884 -12.711 -3.353 36.345 hybrid contribution -0.505 1.069 -0.026 1.183 sum -34.389 -11.642 -3.379 36.463 Atomic orbital electron populations 1.21182 0.88069 1.05025 1.04079 1.20260 0.94826 0.85034 0.95042 1.22254 0.96182 0.97259 1.13600 1.18159 0.88327 0.87776 0.76379 1.90843 1.69987 1.33297 1.42262 1.22558 0.94573 0.95235 1.17502 1.17531 0.85982 0.81139 0.79412 1.90878 1.66290 1.38476 1.42447 1.48087 1.07684 1.25081 1.53872 1.22461 0.96701 0.90987 0.94082 1.21922 0.97455 1.02208 0.95608 1.21601 0.93609 0.98295 1.01593 1.21825 0.97014 0.98504 0.95499 0.91223 1.20134 0.88043 0.91791 0.92422 0.92629 1.22455 1.01785 0.99607 0.98650 1.42849 1.16767 1.07918 1.71673 1.19016 0.89890 0.97739 1.30394 0.89270 1.24621 0.96181 0.97551 1.00515 1.69706 1.13216 1.30390 1.45058 0.86637 0.78819 0.85106 0.78541 1.20620 1.21886 1.20336 1.21673 0.76897 1.04474 0.96635 1.22812 0.82002 1.00532 0.92544 1.42590 1.05226 1.07122 1.61301 1.22526 0.97822 0.84368 1.04509 0.89345 0.88891 0.90133 0.83029 0.91030 0.89153 0.91035 0.91529 0.91059 0.91658 0.92408 0.94032 0.93723 0.80497 0.93174 0.91268 0.88105 0.79906 0.89976 0.88769 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.23 9.34 36.01 0.34 0.11 16 2 C 0.15 0.95 6.64 -82.13 -0.54 0.40 16 3 C -0.27 -2.81 9.57 -39.47 -0.38 -3.19 16 4 C 0.41 6.55 6.94 -34.68 -0.24 6.31 16 5 O -0.48 -10.47 16.90 -9.47 -0.16 -10.63 16 6 C -0.29 -4.02 5.69 -102.72 -0.58 -4.61 16 7 C 0.57 10.27 7.37 -12.58 -0.09 10.17 16 8 O -0.51 -12.12 15.65 -9.05 -0.14 -12.27 16 9 N -0.61 -9.03 2.97 -174.08 -0.52 -9.54 16 10 C 0.08 0.72 5.01 -3.71 -0.02 0.70 16 11 C -0.13 -1.21 6.08 -26.61 -0.16 -1.38 16 12 C -0.11 -1.30 4.85 -26.69 -0.13 -1.43 16 13 C -0.11 -1.74 1.97 -90.50 -0.18 -1.92 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.19 3.58 2.48 -67.93 -0.17 3.42 16 16 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 17 C -0.16 -2.91 9.14 37.16 0.34 -2.57 16 18 N -0.75 -18.51 4.32 -53.43 -0.23 -18.74 16 19 C -0.24 -7.00 10.41 -15.06 -0.16 -7.16 16 20 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 22 N -0.94 -30.61 13.97 55.49 0.78 -29.84 16 23 Si 0.88 24.45 27.74 -169.99 -4.71 19.74 16 24 H -0.28 -8.01 7.11 56.52 0.40 -7.60 16 25 H -0.29 -8.13 7.11 56.52 0.40 -7.73 16 26 H -0.28 -7.46 6.52 56.52 0.37 -7.09 16 27 C 0.12 2.17 5.46 -3.71 -0.02 2.15 16 28 C 0.15 1.16 7.73 -16.54 -0.13 1.03 16 29 N -0.47 -2.37 2.97 -120.14 -0.36 -2.73 16 30 C 0.05 0.00 9.98 59.84 0.60 0.60 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.09 0.15 7.97 -51.93 -0.41 -0.27 16 33 H 0.08 -0.03 6.00 -51.93 -0.31 -0.34 16 34 H 0.15 1.38 8.01 -52.48 -0.42 0.96 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.09 0.61 3.51 -52.64 -0.18 0.42 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.59 6.40 -51.93 -0.33 0.25 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.36 9.27 5.48 -40.82 -0.22 9.04 16 45 H 0.26 8.11 8.31 -40.82 -0.34 7.77 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.10 2.23 6.53 -51.93 -0.34 1.89 16 48 H 0.18 0.86 5.24 -52.48 -0.27 0.58 16 49 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 50 H 0.09 -0.16 5.94 -51.93 -0.31 -0.46 16 51 H 0.09 -0.15 7.86 -51.93 -0.41 -0.56 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -43.75 394.58 -8.81 -52.56 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.79 Total: 2.74 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.62 Total: 2.76 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.33 Total: -60.85 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.30 Total: -22.89 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.71 Total: 19.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -43.75 -8.81 -52.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698929475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.923 kcal (2) G-P(sol) polarization free energy of solvation -43.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds