Wall clock time and date at job start Wed Apr 1 2020 04:25:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34863 * 119.10397 * 2 1
4 4 C 1.41669 * 119.33749 * 179.73987 * 3 2 1
5 5 O 1.22089 * 121.06415 * 180.27061 * 4 3 2
6 6 C 1.47091 * 117.86547 * 0.51661 * 4 3 2
7 7 C 1.47282 * 120.88271 * 179.78612 * 6 4 3
8 8 O 1.21622 * 120.00378 * 33.82879 * 7 6 4
9 9 N 1.34785 * 120.00224 * 213.83671 * 7 6 4
10 10 C 1.46923 * 120.62481 * 356.59978 * 9 7 6
11 11 C 1.53197 * 108.77441 * 126.41675 * 10 9 7
12 12 C 1.53037 * 109.33848 * 54.61641 * 11 10 9
13 13 C 1.53037 * 109.54058 * 298.68406 * 12 11 10
14 14 H 1.08993 * 109.49683 * 301.35144 * 13 12 11
15 15 C 1.53002 * 109.49937 * 181.28303 * 13 12 11
16 16 H 1.08995 * 109.46952 * 300.06516 * 15 13 12
17 17 C 1.53005 * 109.46709 * 60.06577 * 15 13 12
18 18 N 1.46498 * 109.47308 * 180.02562 * 15 13 12
19 19 C 1.36936 * 120.00108 * 155.00190 * 18 15 13
20 20 H 1.08002 * 119.99696 * 359.97438 * 19 18 15
21 21 C 1.38807 * 119.99904 * 180.02562 * 19 18 15
22 22 N 1.31623 * 119.99838 * 179.72487 * 21 19 18
23 23 Si 1.86800 * 120.00185 * 359.97438 * 21 19 18
24 24 H 1.48501 * 109.46805 * 90.00287 * 23 21 19
25 25 H 1.48494 * 109.47423 * 209.99950 * 23 21 19
26 26 H 1.48497 * 109.47281 * 330.00817 * 23 21 19
27 27 C 1.46921 * 120.63389 * 176.62362 * 9 7 6
28 28 C 1.37994 * 118.23432 * 359.50302 * 6 4 3
29 29 N 1.34345 * 120.37323 * 0.23594 * 28 6 4
30 30 C 1.46492 * 118.80316 * 180.02562 * 29 28 6
31 31 H 1.08999 * 109.46972 * 264.08546 * 1 2 3
32 32 H 1.08998 * 109.46618 * 24.08461 * 1 2 3
33 33 H 1.09001 * 109.47084 * 144.08173 * 1 2 3
34 34 H 1.08007 * 120.32890 * 0.02562 * 3 2 1
35 35 H 1.09008 * 109.58779 * 246.20404 * 10 9 7
36 36 H 1.09005 * 109.59105 * 6.62577 * 10 9 7
37 37 H 1.08999 * 109.49809 * 174.58540 * 11 10 9
38 38 H 1.08998 * 109.49644 * 294.68244 * 11 10 9
39 39 H 1.08999 * 109.48332 * 178.64414 * 12 11 10
40 40 H 1.09000 * 109.43397 * 58.69061 * 12 11 10
41 41 H 1.08998 * 109.46956 * 180.02562 * 17 15 13
42 42 H 1.08998 * 109.47269 * 300.00073 * 17 15 13
43 43 H 1.08993 * 109.46943 * 60.00262 * 17 15 13
44 44 H 0.97005 * 119.99825 * 334.99867 * 18 15 13
45 45 H 0.97003 * 119.99664 * 179.97438 * 22 21 19
46 46 H 1.09005 * 109.58732 * 113.79686 * 27 9 7
47 47 H 1.08999 * 109.58761 * 353.37339 * 27 9 7
48 48 H 1.08004 * 119.81364 * 180.25097 * 28 6 4
49 49 H 1.08996 * 109.47261 * 95.95704 * 30 29 28
50 50 H 1.09000 * 109.46884 * 215.95193 * 30 29 28
51 51 H 1.08993 * 109.47526 * 335.95317 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1630 1.1783 0.0000
4 6 3.5797 1.1841 0.0056
5 8 4.2054 2.2325 0.0107
6 6 4.2725 -0.1134 -0.0005
7 6 5.7436 -0.1849 0.0001
8 8 6.3931 0.6565 0.5911
9 7 6.3701 -1.1827 -0.6545
10 6 5.5990 -2.2475 -1.3104
11 6 6.0438 -2.3490 -2.7729
12 6 7.5605 -2.5455 -2.8289
13 6 8.2566 -1.3394 -2.1943
14 1 7.9689 -0.4322 -2.7255
15 6 9.7733 -1.5220 -2.2795
16 1 10.0604 -2.4293 -1.7481
17 6 10.1915 -1.6363 -3.7468
18 7 10.4391 -0.3675 -1.6712
19 6 11.7046 -0.4956 -1.1641
20 1 12.2117 -1.4480 -1.2122
21 6 12.3353 0.5982 -0.5874
22 7 13.5496 0.4736 -0.0951
23 14 11.4579 2.2452 -0.5036
24 1 10.6903 2.3331 0.7647
25 1 12.4577 3.3419 -0.5540
26 1 10.5279 2.3698 -1.6545
27 6 7.8370 -1.2265 -0.7253
28 6 3.5076 -1.2619 -0.0008
29 7 2.1663 -1.1848 -0.0004
30 6 1.3880 -2.4258 -0.0001
31 1 -0.3633 -0.1059 1.0222
32 1 -0.3632 0.9382 -0.4194
33 1 -0.3633 -0.8323 -0.6029
34 1 1.6137 2.1083 0.0004
35 1 5.7833 -3.1960 -0.8058
36 1 4.5363 -2.0088 -1.2674
37 1 5.5493 -3.1977 -3.2455
38 1 5.7765 -1.4325 -3.2989
39 1 7.8764 -2.6421 -3.8676
40 1 7.8295 -3.4493 -2.2822
41 1 11.2719 -1.7668 -3.8075
42 1 9.6961 -2.4950 -4.2000
43 1 9.9044 -0.7290 -4.2781
44 1 9.9835 0.4878 -1.6278
45 1 13.9904 1.2381 0.3076
46 1 8.2038 -2.0917 -0.1729
47 1 8.2509 -0.3141 -0.2961
48 1 3.9898 -2.2283 -0.0011
49 1 1.1049 -2.6770 1.0221
50 1 0.4900 -2.2916 -0.6032
51 1 1.9898 -3.2322 -0.4190
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001698929475.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:25
Heat of formation + Delta-G solvation = -29.447980 kcal
Electronic energy + Delta-G solvation = -31813.036106 eV
Core-core repulsion = 27712.912365 eV
Total energy + Delta-G solvation = -4100.123740 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-42.46981 -40.99592 -39.38949 -38.72256 -37.13314 -35.09745 -34.25742 -33.69471
-33.15227 -31.80231 -30.33127 -28.90223 -27.72461 -26.91742 -25.73716 -24.83058
-24.30827 -22.86976 -22.18298 -21.34698 -20.47959 -19.64844 -19.17854 -18.24067
-17.64310 -17.19128 -16.85916 -16.81418 -16.55263 -16.23138 -15.86984 -15.66573
-15.41335 -14.98534 -14.94043 -14.82268 -14.43465 -14.34273 -14.29171 -14.18678
-13.93859 -13.85736 -13.77766 -13.53642 -13.28148 -13.22235 -12.96121 -12.69128
-12.57049 -12.52197 -12.35062 -12.24460 -11.93116 -11.85301 -11.66083 -11.42101
-11.28631 -11.13906 -11.04336 -10.47920 -10.32590 -9.68272 -9.32643 -9.07531
-8.08503 -5.36835 -0.21706 0.27002 1.24761 1.32112 1.36079 1.43706
1.67342 2.00435 2.39500 2.65459 3.19203 3.25195 3.41161 3.51268
3.56433 3.74394 3.76573 3.88773 3.92525 4.10292 4.16805 4.20869
4.27799 4.37877 4.43987 4.48550 4.53724 4.58309 4.69661 4.74012
4.74508 4.79826 4.82336 4.87382 4.89244 4.91124 5.00314 5.02718
5.13489 5.17401 5.24805 5.28136 5.36411 5.51353 5.52608 5.61106
5.70151 5.75594 5.77052 6.18551 6.42281 7.03512 7.03823 7.21841
7.82791 7.98976 9.13473
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014565 B = 0.003104 C = 0.002698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1921.964768 B = 9019.634982 C =10374.188933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.193 3.807
3 C -0.308 4.308
4 C 0.379 3.621
5 O -0.584 6.584
6 C -0.348 4.348
7 C 0.561 3.439
8 O -0.594 6.594
9 N -0.606 5.606
10 C 0.070 3.930
11 C -0.128 4.128
12 C -0.108 4.108
13 C -0.096 4.096
14 H 0.045 0.955
15 C 0.176 3.824
16 H 0.057 0.943
17 C -0.155 4.155
18 N -0.757 5.757
19 C -0.210 4.210
20 H 0.072 0.928
21 C -0.053 4.053
22 N -0.978 5.978
23 Si 0.931 3.069
24 H -0.299 1.299
25 H -0.287 1.287
26 H -0.269 1.269
27 C 0.127 3.873
28 C 0.205 3.795
29 N -0.454 5.454
30 C 0.029 3.971
31 H 0.110 0.890
32 H 0.095 0.905
33 H 0.119 0.881
34 H 0.152 0.848
35 H 0.113 0.887
36 H 0.117 0.883
37 H 0.123 0.877
38 H 0.047 0.953
39 H 0.084 0.916
40 H 0.086 0.914
41 H 0.033 0.967
42 H 0.088 0.912
43 H 0.038 0.962
44 H 0.355 0.645
45 H 0.256 0.744
46 H 0.078 0.922
47 H 0.039 0.961
48 H 0.230 0.770
49 H 0.103 0.897
50 H 0.123 0.877
51 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -40.740 -19.432 -5.775 45.505
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.085 3.915
3 C -0.331 4.331
4 C 0.274 3.726
5 O -0.474 6.474
6 C -0.358 4.358
7 C 0.352 3.648
8 O -0.475 6.475
9 N -0.339 5.339
10 C -0.049 4.049
11 C -0.166 4.166
12 C -0.146 4.146
13 C -0.116 4.116
14 H 0.064 0.936
15 C 0.068 3.932
16 H 0.075 0.925
17 C -0.214 4.214
18 N -0.400 5.400
19 C -0.341 4.341
20 H 0.090 0.910
21 C -0.244 4.244
22 N -0.630 5.630
23 Si 0.762 3.238
24 H -0.227 1.227
25 H -0.214 1.214
26 H -0.195 1.195
27 C 0.004 3.996
28 C 0.071 3.929
29 N -0.137 5.137
30 C -0.109 4.109
31 H 0.128 0.872
32 H 0.114 0.886
33 H 0.137 0.863
34 H 0.169 0.831
35 H 0.131 0.869
36 H 0.134 0.866
37 H 0.141 0.859
38 H 0.066 0.934
39 H 0.102 0.898
40 H 0.104 0.896
41 H 0.053 0.947
42 H 0.106 0.894
43 H 0.057 0.943
44 H 0.187 0.813
45 H 0.065 0.935
46 H 0.096 0.904
47 H 0.057 0.943
48 H 0.246 0.754
49 H 0.122 0.878
50 H 0.142 0.858
51 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -40.068 -18.769 -5.413 44.576
hybrid contribution 1.098 2.562 0.567 2.844
sum -38.970 -16.207 -4.846 42.483
Atomic orbital electron populations
1.21420 0.83647 1.06977 1.06139 1.20851 0.97120 0.83886 0.89679
1.22075 0.93582 0.99752 1.17733 1.19052 0.90675 0.87671 0.75228
1.90777 1.71999 1.36045 1.48579 1.22056 0.92707 0.96735 1.24339
1.18284 0.87761 0.80412 0.78361 1.90812 1.68404 1.41848 1.46439
1.48150 1.06721 1.25785 1.53199 1.23007 0.97233 0.90493 0.94212
1.21943 0.95653 1.03510 0.95477 1.21624 0.95058 0.96000 1.01881
1.21694 0.94940 1.00321 0.94651 0.93628 1.20507 0.89969 0.89566
0.93150 0.92453 1.22305 1.00612 1.01398 0.97084 1.43039 1.15535
1.09512 1.71910 1.19076 0.90875 0.96447 1.27734 0.90967 1.25148
0.96997 1.00241 1.02054 1.69807 1.14677 1.31031 1.47452 0.85784
0.77709 0.82579 0.77758 1.22692 1.21358 1.19500 1.21398 0.79131
1.01704 0.97391 1.23198 0.82894 0.99796 0.86973 1.43308 1.04782
1.09089 1.56549 1.23203 0.98746 0.81945 1.06964 0.87177 0.88591
0.86275 0.83065 0.86866 0.86611 0.85872 0.93384 0.89769 0.89591
0.94746 0.89360 0.94310 0.81317 0.93455 0.90376 0.94262 0.75417
0.87827 0.85833 0.85679
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 0.30 9.34 71.24 0.67 0.97 16
2 C 0.19 1.63 6.64 41.20 0.27 1.90 16
3 C -0.31 -6.66 9.57 22.34 0.21 -6.44 16
4 C 0.38 13.56 6.94 25.44 0.18 13.74 16
5 O -0.58 -29.50 16.90 8.07 0.14 -29.36 16
6 C -0.35 -10.05 5.69 -18.63 -0.11 -10.16 16
7 C 0.56 21.82 7.37 86.62 0.64 22.46 16
8 O -0.59 -32.37 15.65 9.57 0.15 -32.22 16
9 N -0.61 -17.88 2.97 -822.92 -2.45 -20.32 16
10 C 0.07 0.92 5.01 86.36 0.43 1.35 16
11 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16
12 C -0.11 -2.03 4.85 30.62 0.15 -1.88 16
13 C -0.10 -3.06 1.97 -10.72 -0.02 -3.08 16
14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
15 C 0.18 6.78 2.48 44.99 0.11 6.89 16
16 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16
17 C -0.15 -5.25 9.14 71.98 0.66 -4.59 16
18 N -0.76 -39.03 4.32 -322.94 -1.40 -40.43 16
19 C -0.21 -12.71 10.41 84.03 0.87 -11.84 16
20 H 0.07 4.59 8.06 -2.91 -0.02 4.56 16
21 C -0.05 -3.39 5.50 84.86 0.47 -2.93 16
22 N -0.98 -66.68 13.97 21.65 0.30 -66.38 16
23 Si 0.93 53.93 27.74 68.60 1.90 55.83 16
24 H -0.30 -18.14 7.11 99.48 0.71 -17.44 16
25 H -0.29 -16.25 7.11 99.48 0.71 -15.55 16
26 H -0.27 -15.00 6.52 99.48 0.65 -14.36 16
27 C 0.13 4.60 5.46 86.36 0.47 5.08 16
28 C 0.20 2.31 7.73 84.25 0.65 2.96 16
29 N -0.45 -1.84 2.97 -534.01 -1.59 -3.43 16
30 C 0.03 -0.26 9.98 127.77 1.28 1.02 16
31 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16
32 H 0.10 -0.13 7.97 -2.39 -0.02 -0.15 16
33 H 0.12 -1.09 6.00 -2.39 -0.01 -1.10 16
34 H 0.15 3.06 8.01 -2.91 -0.02 3.03 16
35 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16
36 H 0.12 0.84 3.51 -3.06 -0.01 0.83 16
37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16
38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.08 1.42 6.36 -2.39 -0.02 1.40 16
40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
42 H 0.09 2.17 6.40 -2.39 -0.02 2.16 16
43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
44 H 0.35 19.27 5.48 -92.70 -0.51 18.77 16
45 H 0.26 16.82 8.31 -92.71 -0.77 16.05 16
46 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16
47 H 0.04 1.92 6.53 -2.39 -0.02 1.90 16
48 H 0.23 0.51 5.24 -2.91 -0.02 0.49 16
49 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16
50 H 0.12 -1.63 5.94 -2.39 -0.01 -1.65 16
51 H 0.12 -1.69 7.86 -2.39 -0.02 -1.71 16
Total: -1.00 -118.96 394.58 4.57 -114.39
By element:
Atomic # 1 Polarization: 7.53 SS G_CDS: 0.38 Total: 7.92 kcal
Atomic # 6 Polarization: 6.88 SS G_CDS: 7.12 Total: 14.00 kcal
Atomic # 7 Polarization: -125.44 SS G_CDS: -5.13 Total: -130.56 kcal
Atomic # 8 Polarization: -61.86 SS G_CDS: 0.29 Total: -61.58 kcal
Atomic # 14 Polarization: 53.93 SS G_CDS: 1.90 Total: 55.83 kcal
Total: -118.96 4.57 -114.39 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698929475.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.943 kcal
(2) G-P(sol) polarization free energy of solvation -118.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.391 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds