Wall clock time and date at job start Wed Apr 1 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34863 * 119.10397 * 2 1 4 4 C 1.41669 * 119.33749 * 179.73987 * 3 2 1 5 5 O 1.22089 * 121.06415 * 180.27061 * 4 3 2 6 6 C 1.47091 * 117.86547 * 0.51661 * 4 3 2 7 7 C 1.47282 * 120.88271 * 179.78612 * 6 4 3 8 8 O 1.21622 * 120.00378 * 33.82879 * 7 6 4 9 9 N 1.34785 * 120.00224 * 213.83671 * 7 6 4 10 10 C 1.46923 * 120.62481 * 356.59978 * 9 7 6 11 11 C 1.53197 * 108.77441 * 126.41675 * 10 9 7 12 12 C 1.53037 * 109.33848 * 54.61641 * 11 10 9 13 13 C 1.53037 * 109.54058 * 298.68406 * 12 11 10 14 14 H 1.08993 * 109.49683 * 301.35144 * 13 12 11 15 15 C 1.53002 * 109.49937 * 181.28303 * 13 12 11 16 16 H 1.08995 * 109.46952 * 300.06516 * 15 13 12 17 17 C 1.53005 * 109.46709 * 60.06577 * 15 13 12 18 18 N 1.46498 * 109.47308 * 180.02562 * 15 13 12 19 19 C 1.36936 * 120.00108 * 155.00190 * 18 15 13 20 20 H 1.08002 * 119.99696 * 359.97438 * 19 18 15 21 21 C 1.38807 * 119.99904 * 180.02562 * 19 18 15 22 22 N 1.31623 * 119.99838 * 179.72487 * 21 19 18 23 23 Si 1.86800 * 120.00185 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46805 * 90.00287 * 23 21 19 25 25 H 1.48494 * 109.47423 * 209.99950 * 23 21 19 26 26 H 1.48497 * 109.47281 * 330.00817 * 23 21 19 27 27 C 1.46921 * 120.63389 * 176.62362 * 9 7 6 28 28 C 1.37994 * 118.23432 * 359.50302 * 6 4 3 29 29 N 1.34345 * 120.37323 * 0.23594 * 28 6 4 30 30 C 1.46492 * 118.80316 * 180.02562 * 29 28 6 31 31 H 1.08999 * 109.46972 * 264.08546 * 1 2 3 32 32 H 1.08998 * 109.46618 * 24.08461 * 1 2 3 33 33 H 1.09001 * 109.47084 * 144.08173 * 1 2 3 34 34 H 1.08007 * 120.32890 * 0.02562 * 3 2 1 35 35 H 1.09008 * 109.58779 * 246.20404 * 10 9 7 36 36 H 1.09005 * 109.59105 * 6.62577 * 10 9 7 37 37 H 1.08999 * 109.49809 * 174.58540 * 11 10 9 38 38 H 1.08998 * 109.49644 * 294.68244 * 11 10 9 39 39 H 1.08999 * 109.48332 * 178.64414 * 12 11 10 40 40 H 1.09000 * 109.43397 * 58.69061 * 12 11 10 41 41 H 1.08998 * 109.46956 * 180.02562 * 17 15 13 42 42 H 1.08998 * 109.47269 * 300.00073 * 17 15 13 43 43 H 1.08993 * 109.46943 * 60.00262 * 17 15 13 44 44 H 0.97005 * 119.99825 * 334.99867 * 18 15 13 45 45 H 0.97003 * 119.99664 * 179.97438 * 22 21 19 46 46 H 1.09005 * 109.58732 * 113.79686 * 27 9 7 47 47 H 1.08999 * 109.58761 * 353.37339 * 27 9 7 48 48 H 1.08004 * 119.81364 * 180.25097 * 28 6 4 49 49 H 1.08996 * 109.47261 * 95.95704 * 30 29 28 50 50 H 1.09000 * 109.46884 * 215.95193 * 30 29 28 51 51 H 1.08993 * 109.47526 * 335.95317 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5797 1.1841 0.0056 5 8 4.2054 2.2325 0.0107 6 6 4.2725 -0.1134 -0.0005 7 6 5.7436 -0.1849 0.0001 8 8 6.3931 0.6565 0.5911 9 7 6.3701 -1.1827 -0.6545 10 6 5.5990 -2.2475 -1.3104 11 6 6.0438 -2.3490 -2.7729 12 6 7.5605 -2.5455 -2.8289 13 6 8.2566 -1.3394 -2.1943 14 1 7.9689 -0.4322 -2.7255 15 6 9.7733 -1.5220 -2.2795 16 1 10.0604 -2.4293 -1.7481 17 6 10.1915 -1.6363 -3.7468 18 7 10.4391 -0.3675 -1.6712 19 6 11.7046 -0.4956 -1.1641 20 1 12.2117 -1.4480 -1.2122 21 6 12.3353 0.5982 -0.5874 22 7 13.5496 0.4736 -0.0951 23 14 11.4579 2.2452 -0.5036 24 1 10.6903 2.3331 0.7647 25 1 12.4577 3.3419 -0.5540 26 1 10.5279 2.3698 -1.6545 27 6 7.8370 -1.2265 -0.7253 28 6 3.5076 -1.2619 -0.0008 29 7 2.1663 -1.1848 -0.0004 30 6 1.3880 -2.4258 -0.0001 31 1 -0.3633 -0.1059 1.0222 32 1 -0.3632 0.9382 -0.4194 33 1 -0.3633 -0.8323 -0.6029 34 1 1.6137 2.1083 0.0004 35 1 5.7833 -3.1960 -0.8058 36 1 4.5363 -2.0088 -1.2674 37 1 5.5493 -3.1977 -3.2455 38 1 5.7765 -1.4325 -3.2989 39 1 7.8764 -2.6421 -3.8676 40 1 7.8295 -3.4493 -2.2822 41 1 11.2719 -1.7668 -3.8075 42 1 9.6961 -2.4950 -4.2000 43 1 9.9044 -0.7290 -4.2781 44 1 9.9835 0.4878 -1.6278 45 1 13.9904 1.2381 0.3076 46 1 8.2038 -2.0917 -0.1729 47 1 8.2509 -0.3141 -0.2961 48 1 3.9898 -2.2283 -0.0011 49 1 1.1049 -2.6770 1.0221 50 1 0.4900 -2.2916 -0.6032 51 1 1.9898 -3.2322 -0.4190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698929475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:25 Heat of formation + Delta-G solvation = -29.447980 kcal Electronic energy + Delta-G solvation = -31813.036106 eV Core-core repulsion = 27712.912365 eV Total energy + Delta-G solvation = -4100.123740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.46981 -40.99592 -39.38949 -38.72256 -37.13314 -35.09745 -34.25742 -33.69471 -33.15227 -31.80231 -30.33127 -28.90223 -27.72461 -26.91742 -25.73716 -24.83058 -24.30827 -22.86976 -22.18298 -21.34698 -20.47959 -19.64844 -19.17854 -18.24067 -17.64310 -17.19128 -16.85916 -16.81418 -16.55263 -16.23138 -15.86984 -15.66573 -15.41335 -14.98534 -14.94043 -14.82268 -14.43465 -14.34273 -14.29171 -14.18678 -13.93859 -13.85736 -13.77766 -13.53642 -13.28148 -13.22235 -12.96121 -12.69128 -12.57049 -12.52197 -12.35062 -12.24460 -11.93116 -11.85301 -11.66083 -11.42101 -11.28631 -11.13906 -11.04336 -10.47920 -10.32590 -9.68272 -9.32643 -9.07531 -8.08503 -5.36835 -0.21706 0.27002 1.24761 1.32112 1.36079 1.43706 1.67342 2.00435 2.39500 2.65459 3.19203 3.25195 3.41161 3.51268 3.56433 3.74394 3.76573 3.88773 3.92525 4.10292 4.16805 4.20869 4.27799 4.37877 4.43987 4.48550 4.53724 4.58309 4.69661 4.74012 4.74508 4.79826 4.82336 4.87382 4.89244 4.91124 5.00314 5.02718 5.13489 5.17401 5.24805 5.28136 5.36411 5.51353 5.52608 5.61106 5.70151 5.75594 5.77052 6.18551 6.42281 7.03512 7.03823 7.21841 7.82791 7.98976 9.13473 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.003104 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.964768 B = 9019.634982 C =10374.188933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.193 3.807 3 C -0.308 4.308 4 C 0.379 3.621 5 O -0.584 6.584 6 C -0.348 4.348 7 C 0.561 3.439 8 O -0.594 6.594 9 N -0.606 5.606 10 C 0.070 3.930 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.096 4.096 14 H 0.045 0.955 15 C 0.176 3.824 16 H 0.057 0.943 17 C -0.155 4.155 18 N -0.757 5.757 19 C -0.210 4.210 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.978 5.978 23 Si 0.931 3.069 24 H -0.299 1.299 25 H -0.287 1.287 26 H -0.269 1.269 27 C 0.127 3.873 28 C 0.205 3.795 29 N -0.454 5.454 30 C 0.029 3.971 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.033 0.967 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.355 0.645 45 H 0.256 0.744 46 H 0.078 0.922 47 H 0.039 0.961 48 H 0.230 0.770 49 H 0.103 0.897 50 H 0.123 0.877 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.740 -19.432 -5.775 45.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 C -0.331 4.331 4 C 0.274 3.726 5 O -0.474 6.474 6 C -0.358 4.358 7 C 0.352 3.648 8 O -0.475 6.475 9 N -0.339 5.339 10 C -0.049 4.049 11 C -0.166 4.166 12 C -0.146 4.146 13 C -0.116 4.116 14 H 0.064 0.936 15 C 0.068 3.932 16 H 0.075 0.925 17 C -0.214 4.214 18 N -0.400 5.400 19 C -0.341 4.341 20 H 0.090 0.910 21 C -0.244 4.244 22 N -0.630 5.630 23 Si 0.762 3.238 24 H -0.227 1.227 25 H -0.214 1.214 26 H -0.195 1.195 27 C 0.004 3.996 28 C 0.071 3.929 29 N -0.137 5.137 30 C -0.109 4.109 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.169 0.831 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.187 0.813 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.246 0.754 49 H 0.122 0.878 50 H 0.142 0.858 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -40.068 -18.769 -5.413 44.576 hybrid contribution 1.098 2.562 0.567 2.844 sum -38.970 -16.207 -4.846 42.483 Atomic orbital electron populations 1.21420 0.83647 1.06977 1.06139 1.20851 0.97120 0.83886 0.89679 1.22075 0.93582 0.99752 1.17733 1.19052 0.90675 0.87671 0.75228 1.90777 1.71999 1.36045 1.48579 1.22056 0.92707 0.96735 1.24339 1.18284 0.87761 0.80412 0.78361 1.90812 1.68404 1.41848 1.46439 1.48150 1.06721 1.25785 1.53199 1.23007 0.97233 0.90493 0.94212 1.21943 0.95653 1.03510 0.95477 1.21624 0.95058 0.96000 1.01881 1.21694 0.94940 1.00321 0.94651 0.93628 1.20507 0.89969 0.89566 0.93150 0.92453 1.22305 1.00612 1.01398 0.97084 1.43039 1.15535 1.09512 1.71910 1.19076 0.90875 0.96447 1.27734 0.90967 1.25148 0.96997 1.00241 1.02054 1.69807 1.14677 1.31031 1.47452 0.85784 0.77709 0.82579 0.77758 1.22692 1.21358 1.19500 1.21398 0.79131 1.01704 0.97391 1.23198 0.82894 0.99796 0.86973 1.43308 1.04782 1.09089 1.56549 1.23203 0.98746 0.81945 1.06964 0.87177 0.88591 0.86275 0.83065 0.86866 0.86611 0.85872 0.93384 0.89769 0.89591 0.94746 0.89360 0.94310 0.81317 0.93455 0.90376 0.94262 0.75417 0.87827 0.85833 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.30 9.34 71.24 0.67 0.97 16 2 C 0.19 1.63 6.64 41.20 0.27 1.90 16 3 C -0.31 -6.66 9.57 22.34 0.21 -6.44 16 4 C 0.38 13.56 6.94 25.44 0.18 13.74 16 5 O -0.58 -29.50 16.90 8.07 0.14 -29.36 16 6 C -0.35 -10.05 5.69 -18.63 -0.11 -10.16 16 7 C 0.56 21.82 7.37 86.62 0.64 22.46 16 8 O -0.59 -32.37 15.65 9.57 0.15 -32.22 16 9 N -0.61 -17.88 2.97 -822.92 -2.45 -20.32 16 10 C 0.07 0.92 5.01 86.36 0.43 1.35 16 11 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 12 C -0.11 -2.03 4.85 30.62 0.15 -1.88 16 13 C -0.10 -3.06 1.97 -10.72 -0.02 -3.08 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 15 C 0.18 6.78 2.48 44.99 0.11 6.89 16 16 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 17 C -0.15 -5.25 9.14 71.98 0.66 -4.59 16 18 N -0.76 -39.03 4.32 -322.94 -1.40 -40.43 16 19 C -0.21 -12.71 10.41 84.03 0.87 -11.84 16 20 H 0.07 4.59 8.06 -2.91 -0.02 4.56 16 21 C -0.05 -3.39 5.50 84.86 0.47 -2.93 16 22 N -0.98 -66.68 13.97 21.65 0.30 -66.38 16 23 Si 0.93 53.93 27.74 68.60 1.90 55.83 16 24 H -0.30 -18.14 7.11 99.48 0.71 -17.44 16 25 H -0.29 -16.25 7.11 99.48 0.71 -15.55 16 26 H -0.27 -15.00 6.52 99.48 0.65 -14.36 16 27 C 0.13 4.60 5.46 86.36 0.47 5.08 16 28 C 0.20 2.31 7.73 84.25 0.65 2.96 16 29 N -0.45 -1.84 2.97 -534.01 -1.59 -3.43 16 30 C 0.03 -0.26 9.98 127.77 1.28 1.02 16 31 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.10 -0.13 7.97 -2.39 -0.02 -0.15 16 33 H 0.12 -1.09 6.00 -2.39 -0.01 -1.10 16 34 H 0.15 3.06 8.01 -2.91 -0.02 3.03 16 35 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.12 0.84 3.51 -3.06 -0.01 0.83 16 37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.42 6.36 -2.39 -0.02 1.40 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 2.17 6.40 -2.39 -0.02 2.16 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.35 19.27 5.48 -92.70 -0.51 18.77 16 45 H 0.26 16.82 8.31 -92.71 -0.77 16.05 16 46 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 47 H 0.04 1.92 6.53 -2.39 -0.02 1.90 16 48 H 0.23 0.51 5.24 -2.91 -0.02 0.49 16 49 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 50 H 0.12 -1.63 5.94 -2.39 -0.01 -1.65 16 51 H 0.12 -1.69 7.86 -2.39 -0.02 -1.71 16 Total: -1.00 -118.96 394.58 4.57 -114.39 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.38 Total: 7.92 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 7.12 Total: 14.00 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -5.13 Total: -130.56 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: 0.29 Total: -61.58 kcal Atomic # 14 Polarization: 53.93 SS G_CDS: 1.90 Total: 55.83 kcal Total: -118.96 4.57 -114.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698929475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.943 kcal (2) G-P(sol) polarization free energy of solvation -118.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds