Wall clock time and date at job start Wed Apr 1 2020 04:29:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.41384 * 126.79474 * 2 1
4 4 C 1.35456 * 103.98068 * 179.97438 * 3 2 1
5 5 C 1.50704 * 126.77303 * 180.02562 * 4 3 2
6 6 C 1.50695 * 115.55138 * 30.07737 * 5 4 3
7 7 O 1.21283 * 120.00759 * 247.45364 * 6 5 4
8 8 N 1.34781 * 119.99698 * 67.45917 * 6 5 4
9 9 C 1.46921 * 120.63148 * 4.84776 * 8 6 5
10 10 C 1.52762 * 109.00877 * 233.58491 * 9 8 6
11 11 C 1.53041 * 109.38266 * 305.58672 * 10 9 8
12 12 C 1.53038 * 109.53808 * 61.24074 * 11 10 9
13 13 C 1.46927 * 120.62688 * 185.12621 * 8 6 5
14 14 H 1.08998 * 109.58823 * 246.14972 * 13 8 6
15 15 C 1.53001 * 109.59225 * 6.58451 * 13 8 6
16 16 H 1.09003 * 109.46997 * 46.62722 * 15 13 8
17 17 C 1.52993 * 109.47310 * 166.62833 * 15 13 8
18 18 N 1.46495 * 109.46593 * 286.63374 * 15 13 8
19 19 C 1.36936 * 120.00043 * 164.79521 * 18 15 13
20 20 H 1.08010 * 119.99989 * 359.97438 * 19 18 15
21 21 C 1.38813 * 120.00403 * 179.97438 * 19 18 15
22 22 N 1.31619 * 119.99851 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 120.00108 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.47474 * 60.00031 * 23 21 19
25 25 H 1.48501 * 109.47128 * 180.02562 * 23 21 19
26 26 H 1.48511 * 109.47034 * 300.00074 * 23 21 19
27 27 C 1.53000 * 117.49438 * 244.41134 * 5 4 3
28 28 C 1.52996 * 117.49651 * 175.75285 * 5 4 3
29 29 O 1.34034 * 106.44632 * 0.02562 * 4 3 2
30 30 N 1.20913 * 111.56876 * 359.70724 * 29 4 3
31 31 H 1.09005 * 109.46962 * 90.00458 * 1 2 3
32 32 H 1.09004 * 109.46698 * 209.99770 * 1 2 3
33 33 H 1.08992 * 109.47434 * 329.99963 * 1 2 3
34 34 H 1.08001 * 128.00968 * 359.96539 * 3 2 1
35 35 H 1.09006 * 109.58463 * 353.42006 * 9 8 6
36 36 H 1.09000 * 109.58892 * 113.84483 * 9 8 6
37 37 H 1.08999 * 109.56290 * 185.55042 * 10 9 8
38 38 H 1.09003 * 109.38315 * 65.51609 * 10 9 8
39 39 H 1.08992 * 109.45970 * 301.22072 * 11 10 9
40 40 H 1.09005 * 109.45866 * 181.26109 * 11 10 9
41 41 H 1.08996 * 109.50216 * 178.67888 * 12 11 10
42 42 H 1.09004 * 109.49592 * 58.58197 * 12 11 10
43 43 H 1.08997 * 109.47307 * 183.38516 * 17 15 13
44 44 H 1.09000 * 109.47288 * 303.38827 * 17 15 13
45 45 H 1.09002 * 109.46848 * 63.38488 * 17 15 13
46 46 H 0.97001 * 120.00548 * 344.78693 * 18 15 13
47 47 H 0.96996 * 120.00072 * 180.02562 * 22 21 19
48 48 H 1.09001 * 117.50401 * 0.02562 * 27 5 4
49 49 H 1.09007 * 117.49915 * 145.02281 * 27 5 4
50 50 H 1.09005 * 117.50039 * 214.97555 * 28 5 4
51 51 H 1.08998 * 117.50099 * 359.97438 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3538 1.1322 0.0000
4 6 3.6024 0.6070 0.0006
5 6 4.9021 1.3699 0.0014
6 6 4.8667 2.7134 0.6829
7 8 4.9963 3.7279 0.0310
8 7 4.6911 2.7878 2.0172
9 6 4.6389 1.5680 2.8345
10 6 3.3578 1.5810 3.6665
11 6 3.2882 2.8808 4.4715
12 6 3.2567 4.0745 3.5143
13 6 4.5423 4.0900 2.6812
14 1 5.3978 4.2678 3.3328
15 6 4.4575 5.1963 1.6277
16 1 3.7563 4.9015 0.8469
17 6 3.9742 6.4905 2.2851
18 7 5.7813 5.4123 1.0389
19 6 5.9049 6.1186 -0.1277
20 1 5.0262 6.5162 -0.6140
21 6 7.1594 6.3238 -0.6854
22 7 8.2301 5.8389 -0.0932
23 14 7.3279 7.2880 -2.2765
24 1 6.7926 8.6596 -2.0832
25 1 8.7606 7.3646 -2.6595
26 1 6.5643 6.6056 -3.3520
27 6 5.8086 1.2221 -1.2222
28 6 6.1963 0.5603 0.1025
29 8 3.4538 -0.7251 0.0003
30 7 2.2869 -1.0422 0.0054
31 1 -0.3633 -0.0001 -1.0277
32 1 -0.3633 -0.8901 0.5138
33 1 -0.3634 0.8899 0.5138
34 1 2.0707 2.1744 -0.0005
35 1 4.6422 0.6925 2.1850
36 1 5.5024 1.5359 3.4988
37 1 3.3566 0.7304 4.3481
38 1 2.4951 1.5170 3.0034
39 1 4.1635 2.9556 5.1166
40 1 2.3856 2.8815 5.0827
41 1 3.1835 4.9987 4.0875
42 1 2.3952 3.9873 2.8522
43 1 3.8562 7.2623 1.5245
44 1 3.0167 6.3137 2.7749
45 1 4.7055 6.8176 3.0242
46 1 6.5705 5.0551 1.4754
47 1 9.1068 5.9826 -0.4827
48 1 5.4649 0.5735 -2.0280
49 1 6.3798 2.0966 -1.5340
50 1 7.0225 0.9996 0.6617
51 1 6.1078 -0.5241 0.1688
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713000900.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:29:58
Heat of formation + Delta-G solvation = 107.092156 kcal
Electronic energy + Delta-G solvation = -33692.825631 eV
Core-core repulsion = 29598.622715 eV
Total energy + Delta-G solvation = -4094.202916 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-44.94999 -40.41258 -37.84844 -36.33479 -34.94458 -34.75763 -32.54763 -32.21861
-31.44171 -29.87816 -28.78872 -27.79907 -25.85547 -24.26082 -23.89839 -23.19395
-22.76392 -22.25526 -20.96416 -19.99636 -19.92960 -18.69719 -17.59705 -17.39480
-16.69428 -16.29145 -15.59646 -15.23287 -14.85649 -14.46481 -14.35144 -14.11059
-13.80254 -13.56189 -13.53178 -13.51300 -13.25849 -13.09777 -13.06664 -12.70606
-12.50488 -12.28718 -12.13828 -11.96660 -11.48004 -11.38209 -11.32307 -11.14990
-11.00770 -10.89948 -10.82304 -10.69051 -10.59170 -10.55105 -10.35905 -10.11552
-10.03470 -9.70232 -9.42600 -9.12804 -8.65919 -8.41490 -8.01056 -6.50809
-5.49457 -2.70131 1.39782 2.18835 2.66507 3.27881 3.47136 3.57697
3.61732 3.62967 3.86248 4.12325 4.31540 4.65466 4.76856 4.80511
4.82271 4.92797 4.95131 5.00268 5.15037 5.18937 5.21105 5.29600
5.43083 5.45128 5.50858 5.58783 5.62493 5.67683 5.72266 5.77750
5.78101 5.83787 5.87954 5.89916 6.01746 6.02652 6.07835 6.09681
6.11262 6.14625 6.32194 6.33715 6.45521 6.46192 6.78810 6.92085
7.01944 7.34172 7.91597 7.93988 8.22591 8.67396 8.91056 9.79719
10.36369 10.72152 11.74793
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010866 B = 0.004597 C = 0.003857
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2576.132575 B = 6089.642884 C = 7257.171857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.019 3.981
3 C -0.219 4.219
4 C 0.026 3.974
5 C -0.089 4.089
6 C 0.520 3.480
7 O -0.414 6.414
8 N -0.605 5.605
9 C 0.113 3.887
10 C -0.133 4.133
11 C -0.118 4.118
12 C -0.128 4.128
13 C 0.148 3.852
14 H 0.067 0.933
15 C 0.182 3.818
16 H 0.057 0.943
17 C -0.169 4.169
18 N -0.692 5.692
19 C -0.182 4.182
20 H 0.061 0.939
21 C -0.025 4.025
22 N -0.945 5.945
23 Si 0.896 3.104
24 H -0.292 1.292
25 H -0.296 1.296
26 H -0.291 1.291
27 C -0.125 4.125
28 C -0.153 4.153
29 O 0.095 5.905
30 N -0.370 5.370
31 H 0.079 0.921
32 H 0.074 0.926
33 H 0.081 0.919
34 H 0.168 0.832
35 H 0.077 0.923
36 H 0.063 0.937
37 H 0.067 0.933
38 H 0.062 0.938
39 H 0.062 0.938
40 H 0.060 0.940
41 H 0.077 0.923
42 H 0.064 0.936
43 H 0.053 0.947
44 H 0.038 0.962
45 H 0.046 0.954
46 H 0.377 0.623
47 H 0.248 0.752
48 H 0.101 0.899
49 H 0.123 0.877
50 H 0.111 0.889
51 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.590 -13.145 7.435 19.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.139 4.139
3 C -0.241 4.241
4 C -0.037 4.037
5 C -0.094 4.094
6 C 0.302 3.698
7 O -0.280 6.280
8 N -0.342 5.342
9 C -0.011 4.011
10 C -0.172 4.172
11 C -0.155 4.155
12 C -0.167 4.167
13 C 0.045 3.955
14 H 0.085 0.915
15 C 0.072 3.928
16 H 0.075 0.925
17 C -0.230 4.230
18 N -0.332 5.332
19 C -0.315 4.315
20 H 0.079 0.921
21 C -0.218 4.218
22 N -0.596 5.596
23 Si 0.729 3.271
24 H -0.219 1.219
25 H -0.222 1.222
26 H -0.218 1.218
27 C -0.162 4.162
28 C -0.191 4.191
29 O 0.030 5.970
30 N -0.077 5.077
31 H 0.098 0.902
32 H 0.093 0.907
33 H 0.100 0.900
34 H 0.186 0.814
35 H 0.096 0.904
36 H 0.081 0.919
37 H 0.085 0.915
38 H 0.081 0.919
39 H 0.081 0.919
40 H 0.078 0.922
41 H 0.095 0.905
42 H 0.082 0.918
43 H 0.072 0.928
44 H 0.057 0.943
45 H 0.065 0.935
46 H 0.211 0.789
47 H 0.058 0.942
48 H 0.119 0.881
49 H 0.141 0.859
50 H 0.129 0.871
51 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -12.747 -13.774 6.861 19.982
hybrid contribution 0.298 1.073 -0.709 1.321
sum -12.449 -12.700 6.151 18.818
Atomic orbital electron populations
1.20149 0.86071 1.03634 1.03315 1.23526 0.98878 0.88797 1.02743
1.22299 0.90853 1.01089 1.09854 1.23024 0.95985 0.83112 1.01586
1.19711 0.86593 0.95743 1.07381 1.18936 0.80256 0.88034 0.82536
1.91317 1.41243 1.31696 1.63742 1.47735 1.74362 1.06206 1.05892
1.21489 0.97394 0.87835 0.94344 1.21825 0.98464 0.98009 0.98869
1.21513 1.01724 0.94567 0.97723 1.22036 0.98289 0.98291 0.98035
1.21529 0.96522 0.82885 0.94589 0.91495 1.20389 0.91151 0.89618
0.91666 0.92549 1.22597 0.98780 1.00927 1.00694 1.42230 1.01161
1.63895 1.25928 1.18951 0.91783 1.22174 0.98543 0.92086 1.24517
0.95734 1.02692 0.98858 1.69626 0.97168 1.52063 1.40766 0.86404
0.76122 0.79855 0.84707 1.21922 1.22182 1.21845 1.23187 0.99012
1.03568 0.90441 1.23191 0.95347 0.99136 1.01389 1.84776 1.21687
1.22442 1.68079 1.73820 0.89208 1.23896 1.20729 0.90248 0.90698
0.90016 0.81406 0.90441 0.91881 0.91464 0.91878 0.91889 0.92160
0.90458 0.91753 0.92826 0.94333 0.93528 0.78920 0.94218 0.88097
0.85858 0.87079 0.87634
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.64 10.47 36.01 0.38 -0.26 16
2 C 0.02 0.24 7.33 -82.10 -0.60 -0.37 16
3 C -0.22 -2.92 10.60 -39.38 -0.42 -3.33 16
4 C 0.03 0.36 5.40 -35.30 -0.19 0.17 16
5 C -0.09 -1.32 1.29 -156.81 -0.20 -1.52 16
6 C 0.52 9.15 6.29 -10.99 -0.07 9.08 16
7 O -0.41 -9.26 9.69 5.56 0.05 -9.21 16
8 N -0.60 -9.17 2.98 -165.48 -0.49 -9.67 16
9 C 0.11 1.37 6.08 -3.93 -0.02 1.34 16
10 C -0.13 -1.39 6.06 -26.83 -0.16 -1.55 16
11 C -0.12 -1.21 5.89 -26.69 -0.16 -1.36 16
12 C -0.13 -1.57 4.39 -26.61 -0.12 -1.69 16
13 C 0.15 2.34 2.63 -67.59 -0.18 2.16 16
14 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16
15 C 0.18 3.57 1.83 -67.94 -0.12 3.45 16
16 H 0.06 1.22 6.34 -51.93 -0.33 0.89 16
17 C -0.17 -3.03 8.74 37.15 0.32 -2.71 16
18 N -0.69 -17.08 3.27 -53.43 -0.17 -17.26 16
19 C -0.18 -5.11 8.29 -15.06 -0.12 -5.23 16
20 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16
21 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16
22 N -0.94 -28.89 13.06 55.49 0.72 -28.16 16
23 Si 0.90 23.34 29.55 -169.99 -5.02 18.32 16
24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16
25 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16
26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16
27 C -0.12 -1.82 9.77 -26.69 -0.26 -2.08 16
28 C -0.15 -1.97 9.23 -26.70 -0.25 -2.21 16
29 O 0.09 1.31 10.97 17.19 0.19 1.50 16
30 N -0.37 -5.13 12.07 33.42 0.40 -4.73 16
31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
34 H 0.17 2.24 8.06 -52.49 -0.42 1.81 16
35 H 0.08 0.93 4.95 -51.93 -0.26 0.67 16
36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.08 0.90 6.63 -51.93 -0.34 0.56 16
42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
43 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16
44 H 0.04 0.56 6.22 -51.93 -0.32 0.24 16
45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
46 H 0.38 10.12 7.69 -40.82 -0.31 9.80 16
47 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16
48 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16
49 H 0.12 2.16 8.03 -51.93 -0.42 1.74 16
50 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16
51 H 0.11 1.13 8.00 -51.93 -0.42 0.71 16
LS Contribution 398.67 15.07 6.01 6.01
Total: -1.00 -32.32 398.67 -8.87 -41.18
By element:
Atomic # 1 Polarization: 17.24 SS G_CDS: -8.28 Total: 8.96 kcal
Atomic # 6 Polarization: -4.66 SS G_CDS: -2.27 Total: -6.93 kcal
Atomic # 7 Polarization: -60.28 SS G_CDS: 0.46 Total: -59.82 kcal
Atomic # 8 Polarization: -7.96 SS G_CDS: 0.24 Total: -7.71 kcal
Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -32.32 -8.87 -41.18 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713000900.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 148.275 kcal
(2) G-P(sol) polarization free energy of solvation -32.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.958 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds