Wall clock time and date at job start Wed Apr 1 2020 04:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 126.79908 * 2 1 4 4 C 1.35456 * 103.98293 * 180.16636 * 3 2 1 5 5 C 1.50695 * 126.77937 * 179.90889 * 4 3 2 6 6 C 1.50701 * 115.54690 * 330.15489 * 5 4 3 7 7 O 1.21288 * 120.00180 * 124.17902 * 6 5 4 8 8 N 1.34781 * 120.00167 * 304.17397 * 6 5 4 9 9 C 1.46929 * 120.62847 * 174.30078 * 8 6 5 10 10 C 1.53194 * 108.76929 * 126.41592 * 9 8 6 11 11 C 1.53045 * 109.31415 * 54.63934 * 10 9 8 12 12 C 1.53002 * 109.46127 * 178.61388 * 11 10 9 13 13 H 1.09000 * 109.47253 * 59.99129 * 12 11 10 14 14 C 1.53005 * 109.46875 * 299.99650 * 12 11 10 15 15 N 1.46493 * 109.46902 * 179.97438 * 12 11 10 16 16 C 1.36938 * 119.99760 * 204.99522 * 15 12 11 17 17 H 1.08004 * 120.00073 * 0.02562 * 16 15 12 18 18 C 1.38809 * 120.00111 * 179.97438 * 16 15 12 19 19 N 1.31624 * 120.00133 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99960 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47021 * 90.00123 * 20 18 16 22 22 H 1.48504 * 109.46956 * 209.99949 * 20 18 16 23 23 H 1.48494 * 109.47020 * 330.00171 * 20 18 16 24 24 C 1.53041 * 109.53182 * 298.62832 * 11 10 9 25 25 C 1.46923 * 120.63200 * 354.32874 * 8 6 5 26 26 C 1.52999 * 117.50406 * 115.82576 * 5 4 3 27 27 C 1.53000 * 117.50077 * 184.48740 * 5 4 3 28 28 O 1.34046 * 106.44308 * 359.64487 * 4 3 2 29 29 N 1.20915 * 111.57117 * 0.24176 * 28 4 3 30 30 H 1.09002 * 109.46705 * 270.25754 * 1 2 3 31 31 H 1.09000 * 109.47433 * 30.25335 * 1 2 3 32 32 H 1.08993 * 109.47023 * 150.26170 * 1 2 3 33 33 H 1.07994 * 128.01168 * 0.07076 * 3 2 1 34 34 H 1.08996 * 109.58764 * 6.63609 * 9 8 6 35 35 H 1.08997 * 109.58798 * 246.20112 * 9 8 6 36 36 H 1.09000 * 109.49659 * 174.58561 * 10 9 8 37 37 H 1.09002 * 109.50073 * 294.68153 * 10 9 8 38 38 H 1.08993 * 109.45860 * 58.64643 * 11 10 9 39 39 H 1.09000 * 109.46848 * 59.99860 * 14 12 11 40 40 H 1.08991 * 109.47195 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.46873 * 300.00556 * 14 12 11 42 42 H 0.97001 * 120.00500 * 24.99423 * 15 12 11 43 43 H 0.97001 * 119.99824 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.50317 * 301.41754 * 24 11 10 45 45 H 1.09005 * 109.52179 * 181.32852 * 24 11 10 46 46 H 1.09008 * 109.58250 * 353.37069 * 25 8 6 47 47 H 1.08997 * 109.58527 * 113.79616 * 25 8 6 48 48 H 1.08993 * 117.49974 * 215.00885 * 26 5 4 49 49 H 1.09001 * 117.49253 * 0.02562 * 26 5 4 50 50 H 1.08996 * 117.50187 * 359.97438 * 27 5 4 51 51 H 1.09005 * 117.49581 * 144.96952 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6068 -0.0038 5 6 4.9022 1.3695 -0.0074 6 6 4.8638 2.7157 -0.6836 7 8 5.2030 3.7093 -0.0763 8 7 4.4527 2.8157 -1.9633 9 6 4.2909 4.1314 -2.5969 10 6 5.0974 4.1540 -3.8991 11 6 4.6717 2.9761 -4.7787 12 6 5.4506 3.0152 -6.0951 13 1 6.5184 2.9467 -5.8876 14 6 5.1559 4.3283 -6.8232 15 7 5.0436 1.8875 -6.9369 16 6 5.8992 1.3996 -7.8883 17 1 6.8741 1.8460 -8.0177 18 6 5.5138 0.3307 -8.6856 19 7 6.3364 -0.1386 -9.5998 20 14 3.8278 -0.4418 -8.4613 21 1 2.8476 0.2455 -9.3398 22 1 3.8910 -1.8812 -8.8211 23 1 3.4047 -0.3038 -7.0446 24 6 4.9654 1.6620 -4.0514 25 6 4.1573 1.6112 -2.7510 26 6 5.8143 1.2169 1.2114 27 6 6.1959 0.5602 -0.1176 28 8 3.4537 -0.7253 0.0022 29 7 2.2868 -1.0424 0.0042 30 1 -0.3633 0.0046 1.0277 31 1 -0.3634 0.8877 -0.5177 32 1 -0.3633 -0.8923 -0.5097 33 1 2.0709 2.1743 0.0011 34 1 4.6585 4.9078 -1.9260 35 1 3.2373 4.3041 -2.8166 36 1 4.9096 5.0888 -4.4272 37 1 6.1600 4.0719 -3.6705 38 1 3.6040 3.0454 -4.9865 39 1 5.4589 5.1671 -6.1965 40 1 5.7103 4.3560 -7.7611 41 1 4.0880 4.3969 -7.0305 42 1 4.1681 1.4864 -6.8204 43 1 6.0669 -0.8853 -10.1572 44 1 6.0292 1.6034 -3.8212 45 1 4.6839 0.8228 -4.6876 46 1 4.4368 0.7246 -2.1815 47 1 3.0929 1.5784 -2.9831 48 1 6.3866 2.0901 1.5242 49 1 5.4745 0.5644 2.0157 50 1 6.1071 -0.5239 -0.1871 51 1 7.0192 1.0014 -0.6796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713680387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:14 Heat of formation + Delta-G solvation = 64.624210 kcal Electronic energy + Delta-G solvation = -32050.749947 eV Core-core repulsion = 27954.705483 eV Total energy + Delta-G solvation = -4096.044464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.24383 -40.76188 -38.50340 -36.95311 -35.65290 -35.07244 -33.00449 -31.83837 -31.21370 -30.98797 -29.02617 -28.84945 -26.08399 -24.88721 -23.65607 -23.34833 -22.93609 -22.65166 -21.49221 -20.31548 -19.86400 -19.00225 -18.18071 -17.83870 -17.53112 -16.80359 -16.26886 -15.58429 -15.20658 -14.83342 -14.72074 -14.34469 -14.10264 -13.85963 -13.72932 -13.68791 -13.52811 -13.41413 -13.29466 -13.00115 -12.74002 -12.56672 -12.46393 -12.38449 -11.98312 -11.74344 -11.67187 -11.44924 -11.41230 -11.19706 -11.12586 -10.99410 -10.84067 -10.41504 -10.39891 -10.28391 -10.17218 -10.02785 -9.88974 -9.59158 -9.44949 -8.96384 -8.76581 -7.28160 -5.78540 -3.13646 1.08300 1.91064 2.02496 2.59101 2.88043 3.33475 3.35539 3.36774 3.43177 3.86044 3.88694 4.08160 4.35589 4.42773 4.56625 4.69054 4.76649 4.83834 4.91015 4.93241 5.06617 5.14077 5.16123 5.20154 5.21727 5.25931 5.38292 5.41059 5.43732 5.45402 5.52036 5.54614 5.58027 5.70225 5.71515 5.78053 5.80098 5.87049 5.96478 6.06888 6.16394 6.26764 6.33146 6.37114 6.49786 6.57611 6.82151 7.00987 7.15961 7.86860 7.96995 7.98288 8.40769 9.19441 9.92007 10.11932 11.40057 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.003424 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.778539 B = 8176.171911 C = 9383.826331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.218 4.218 4 C 0.014 3.986 5 C -0.096 4.096 6 C 0.563 3.437 7 O -0.533 6.533 8 N -0.596 5.596 9 C 0.112 3.888 10 C -0.127 4.127 11 C -0.093 4.093 12 C 0.183 3.817 13 H 0.054 0.946 14 C -0.167 4.167 15 N -0.747 5.747 16 C -0.240 4.240 17 H 0.089 0.911 18 C 0.005 3.995 19 N -0.935 5.935 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.123 4.123 25 C 0.107 3.893 26 C -0.124 4.124 27 C -0.142 4.142 28 O 0.104 5.896 29 N -0.361 5.361 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.168 0.832 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.359 0.641 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.119 0.881 49 H 0.108 0.892 50 H 0.116 0.884 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 4.993 22.953 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C -0.239 4.239 4 C -0.050 4.050 5 C -0.101 4.101 6 C 0.349 3.651 7 O -0.410 6.410 8 N -0.328 5.328 9 C -0.010 4.010 10 C -0.166 4.166 11 C -0.113 4.113 12 C 0.074 3.926 13 H 0.072 0.928 14 C -0.227 4.227 15 N -0.390 5.390 16 C -0.370 4.370 17 H 0.107 0.893 18 C -0.191 4.191 19 N -0.583 5.583 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.161 4.161 25 C -0.015 4.015 26 C -0.162 4.162 27 C -0.179 4.179 28 O 0.037 5.963 29 N -0.066 5.066 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.186 0.814 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.192 0.808 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.137 0.863 49 H 0.127 0.873 50 H 0.134 0.866 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.476 4.147 23.102 24.633 hybrid contribution -1.468 0.095 -0.236 1.490 sum -8.944 4.242 22.867 24.917 Atomic orbital electron populations 1.20183 0.85775 1.04031 1.03392 1.23568 0.99106 0.88528 1.02565 1.22286 0.90809 1.01126 1.09721 1.22819 0.95470 0.83803 1.02918 1.19409 0.87910 0.95026 1.07711 1.18872 0.76996 0.87821 0.81400 1.90706 1.48349 1.37184 1.64720 1.48035 1.65543 1.08244 1.10982 1.21714 1.00226 0.84194 0.94847 1.22006 1.00440 0.99470 0.94645 1.21433 1.00470 0.93777 0.95598 1.20181 0.97000 0.87558 0.87842 0.92811 1.22463 1.01031 0.98080 1.01081 1.42781 1.17395 1.36925 1.41918 1.19061 0.97816 1.11389 1.08706 0.89287 1.24652 0.97492 0.98665 0.98290 1.69698 1.35690 1.28506 1.24375 0.86593 0.85638 0.78984 0.77506 1.21207 1.21815 1.20410 1.21909 1.00408 0.99302 0.94529 1.21923 0.99983 0.86488 0.93114 1.23208 0.98665 1.03479 0.90838 1.23275 0.94147 1.00208 1.00318 1.84824 1.21843 1.21883 1.67736 1.73878 0.89048 1.23722 1.19908 0.90130 0.89898 0.90359 0.81423 0.89018 0.91409 0.90080 0.91311 0.91511 0.93942 0.92492 0.93726 0.80795 0.93098 0.91297 0.89496 0.90144 0.91533 0.86318 0.87329 0.86553 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.47 36.01 0.38 -0.18 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 C -0.22 -2.22 10.45 -39.38 -0.41 -2.63 16 4 C 0.01 0.14 4.72 -35.30 -0.17 -0.02 16 5 C -0.10 -0.97 1.40 -156.81 -0.22 -1.19 16 6 C 0.56 6.78 6.67 -10.98 -0.07 6.70 16 7 O -0.53 -7.77 15.90 5.55 0.09 -7.68 16 8 N -0.60 -6.78 2.97 -172.77 -0.51 -7.30 16 9 C 0.11 1.21 6.44 -3.71 -0.02 1.18 16 10 C -0.13 -1.46 5.04 -26.61 -0.13 -1.59 16 11 C -0.09 -1.29 1.79 -90.57 -0.16 -1.45 16 12 C 0.18 3.24 2.47 -67.93 -0.17 3.07 16 13 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 14 C -0.17 -2.73 9.14 37.16 0.34 -2.39 16 15 N -0.75 -16.58 4.21 -53.43 -0.22 -16.81 16 16 C -0.24 -6.51 10.41 -15.06 -0.16 -6.67 16 17 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -28.94 13.97 55.49 0.78 -28.17 16 20 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 24 C -0.12 -1.71 5.22 -26.61 -0.14 -1.85 16 25 C 0.11 1.25 5.55 -3.71 -0.02 1.23 16 26 C -0.12 -1.03 9.75 -26.69 -0.26 -1.29 16 27 C -0.14 -1.19 9.62 -26.69 -0.26 -1.44 16 28 O 0.10 1.21 10.97 17.16 0.19 1.40 16 29 N -0.36 -4.48 12.07 33.42 0.40 -4.08 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.09 1.03 7.00 -51.93 -0.36 0.66 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.85 6.36 -51.93 -0.33 0.52 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.36 7.88 5.44 -40.82 -0.22 7.66 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.09 1.41 7.40 -51.93 -0.38 1.03 16 46 H 0.08 0.92 5.22 -51.92 -0.27 0.65 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.12 1.00 7.83 -51.93 -0.41 0.59 16 49 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.12 0.87 8.00 -51.93 -0.42 0.46 16 51 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -32.52 404.41 -8.31 -40.83 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.23 Total: 7.63 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.17 Total: -8.87 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.44 Total: -56.35 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.28 Total: -6.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.52 -8.31 -40.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713680387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.457 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds