Wall clock time and date at job start Wed Apr 1 2020 04:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30010 * 127.33977 * 2 1 4 4 O 1.20660 * 112.30055 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15790 * 359.75994 * 4 3 2 6 6 C 1.50694 * 126.82645 * 180.30254 * 5 4 3 7 7 C 1.52997 * 117.50136 * 8.72245 * 6 5 4 8 8 C 1.53001 * 60.00217 * 252.51296 * 7 6 5 9 9 C 1.37354 * 106.33864 * 0.38594 * 5 4 3 10 10 C 1.47405 * 128.56126 * 179.91186 * 9 5 4 11 11 O 1.21613 * 120.00175 * 269.70152 * 10 9 5 12 12 N 1.34775 * 119.99957 * 89.70129 * 10 9 5 13 13 C 1.46930 * 120.63069 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.77035 * 233.60869 * 13 12 10 15 15 C 1.53035 * 109.31362 * 305.36094 * 14 13 12 16 16 C 1.53034 * 109.53821 * 61.36810 * 15 14 13 17 17 H 1.09011 * 109.49773 * 58.61791 * 16 15 14 18 18 C 1.53002 * 109.50069 * 178.68198 * 16 15 14 19 19 N 1.46498 * 109.47233 * 184.93775 * 18 16 15 20 20 C 1.46503 * 119.99945 * 269.99588 * 19 18 16 21 21 C 1.36935 * 120.00162 * 90.00113 * 19 18 16 22 22 H 1.08001 * 120.00061 * 338.00443 * 21 19 18 23 23 C 1.38813 * 119.99907 * 158.27540 * 21 19 18 24 24 N 1.31611 * 120.00274 * 347.64832 * 23 21 19 25 25 Si 1.86800 * 119.99801 * 167.64359 * 23 21 19 26 26 H 1.48496 * 109.47227 * 90.00052 * 25 23 21 27 27 H 1.48495 * 109.47143 * 210.00525 * 25 23 21 28 28 H 1.48507 * 109.47179 * 330.00029 * 25 23 21 29 29 C 1.46938 * 120.60401 * 180.02562 * 12 10 9 30 30 H 1.08999 * 109.47279 * 269.99798 * 1 2 3 31 31 H 1.09000 * 109.46776 * 29.99821 * 1 2 3 32 32 H 1.09000 * 109.47716 * 149.99679 * 1 2 3 33 33 H 1.09004 * 115.54854 * 154.43800 * 6 5 4 34 34 H 1.08998 * 117.49897 * 0.02562 * 7 6 5 35 35 H 1.09007 * 117.49622 * 145.02413 * 7 6 5 36 36 H 1.09003 * 117.49470 * 252.51434 * 8 7 6 37 37 H 1.08992 * 117.52058 * 107.48356 * 8 7 6 38 38 H 1.08995 * 109.59057 * 113.81937 * 13 12 10 39 39 H 1.08999 * 109.70308 * 353.46028 * 13 12 10 40 40 H 1.09010 * 109.49299 * 185.41246 * 14 13 12 41 41 H 1.09000 * 109.49882 * 65.31596 * 14 13 12 42 42 H 1.09000 * 109.45906 * 301.34699 * 15 14 13 43 43 H 1.09002 * 109.44518 * 181.38340 * 15 14 13 44 44 H 1.08997 * 109.46739 * 64.93621 * 18 16 15 45 45 H 1.09005 * 109.46910 * 304.93610 * 18 16 15 46 46 H 1.08999 * 109.47136 * 264.82997 * 20 19 18 47 47 H 1.09001 * 109.46693 * 24.82839 * 20 19 18 48 48 H 1.09000 * 109.46928 * 144.82596 * 20 19 18 49 49 H 0.96998 * 120.00508 * 180.02562 * 24 23 21 50 50 H 1.08994 * 109.61160 * 6.62270 * 29 12 10 51 51 H 1.09001 * 109.56251 * 246.19429 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7206 -0.0005 5 6 3.6494 -0.6010 0.0042 6 6 4.9711 -1.3248 0.0114 7 6 6.2343 -0.4870 0.2195 8 6 5.9221 -1.0707 -1.1599 9 6 2.3991 -1.1697 -0.0007 10 6 2.0399 -2.5993 -0.0003 11 8 1.8913 -3.1892 -1.0533 12 7 1.8763 -3.2527 1.1670 13 6 2.0519 -2.5534 2.4473 14 6 3.0610 -3.3303 3.2989 15 6 2.5973 -4.7824 3.4343 16 6 2.5338 -5.4306 2.0494 17 1 3.5170 -5.3850 1.5809 18 6 2.1017 -6.8917 2.1888 19 7 2.1547 -7.5438 0.8780 20 6 0.9767 -7.5343 0.0070 21 6 3.3052 -8.1622 0.4668 22 1 4.2528 -7.8868 0.9057 23 6 3.2542 -9.1390 -0.5181 24 7 2.0956 -9.6449 -0.8839 25 14 4.8302 -9.7356 -1.3243 26 1 5.3725 -10.8870 -0.5591 27 1 4.5435 -10.1586 -2.7185 28 1 5.8274 -8.6353 -1.3360 29 6 1.5188 -4.6778 1.1829 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 4.9556 -2.3275 0.4387 34 1 6.1093 0.5877 0.3516 35 1 7.0502 -0.9384 0.7840 36 1 6.5326 -1.9061 -1.5028 37 1 5.5916 -0.3803 -1.9359 38 1 1.0966 -2.5015 2.9694 39 1 2.4252 -1.5453 2.2673 40 1 3.1284 -2.8762 4.2876 41 1 4.0390 -3.3039 2.8184 42 1 1.6085 -4.8066 3.8923 43 1 3.3010 -5.3311 4.0602 44 1 1.0833 -6.9342 2.5748 45 1 2.7731 -7.4050 2.8773 46 1 0.4119 -8.4555 0.1498 47 1 0.3474 -6.6799 0.2564 48 1 1.2944 -7.4603 -1.0330 49 1 2.0600 -10.3278 -1.5719 50 1 1.5418 -5.0721 0.1671 51 1 0.5197 -4.7988 1.6016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713895386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:54 Heat of formation + Delta-G solvation = 72.263556 kcal Electronic energy + Delta-G solvation = -32268.412005 eV Core-core repulsion = 28172.698808 eV Total energy + Delta-G solvation = -4095.713197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.04970 -40.02697 -37.73067 -37.51267 -35.51803 -34.73240 -33.03915 -31.84207 -31.70143 -30.01837 -28.99583 -26.70390 -25.77381 -25.49487 -24.03570 -23.58807 -22.70050 -22.49504 -21.01974 -20.15495 -19.73070 -19.02049 -18.01135 -17.54851 -16.74800 -16.55637 -16.18635 -15.82199 -14.96311 -14.88383 -14.62269 -14.41696 -13.89633 -13.70815 -13.61064 -13.59981 -13.42476 -13.23223 -13.14780 -12.81452 -12.48427 -12.45968 -12.25023 -11.89116 -11.69064 -11.58605 -11.40648 -11.28563 -11.00784 -10.89507 -10.82710 -10.75225 -10.64266 -10.47303 -10.23869 -10.14619 -9.95297 -9.92129 -9.82201 -9.77257 -9.27500 -8.54685 -8.44105 -6.68735 -5.65984 -3.11891 1.08541 1.73473 2.45929 2.58853 3.13200 3.41264 3.46030 3.48073 3.49677 3.87642 3.96857 4.40596 4.44796 4.53977 4.57751 4.64618 4.77318 4.91404 5.03831 5.05860 5.20652 5.22529 5.29708 5.32558 5.34417 5.37672 5.40366 5.47851 5.55357 5.58915 5.68052 5.71204 5.72537 5.78103 5.81948 5.87552 6.05173 6.07934 6.14457 6.24159 6.36896 6.52664 6.68686 6.75577 6.84499 6.95343 7.44632 7.48027 7.78979 7.87258 8.03344 8.20191 8.45525 9.29866 9.93789 10.41719 11.38686 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.003404 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.041073 B = 8223.210941 C = 8959.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.357 5.357 4 O 0.094 5.906 5 C 0.047 3.953 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.232 4.232 10 C 0.594 3.406 11 O -0.516 6.516 12 N -0.598 5.598 13 C 0.110 3.890 14 C -0.132 4.132 15 C -0.114 4.114 16 C -0.122 4.122 17 H 0.073 0.927 18 C 0.159 3.841 19 N -0.602 5.602 20 C 0.162 3.838 21 C -0.252 4.252 22 H 0.066 0.934 23 C 0.002 3.998 24 N -0.908 5.908 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.122 3.878 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.050 0.950 46 H 0.028 0.972 47 H -0.002 1.002 48 H 0.042 0.958 49 H 0.251 0.749 50 H 0.107 0.893 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 20.752 7.940 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 N -0.064 5.064 4 O 0.033 5.967 5 C -0.016 4.016 6 C -0.113 4.113 7 C -0.198 4.198 8 C -0.192 4.192 9 C -0.240 4.240 10 C 0.379 3.621 11 O -0.391 6.391 12 N -0.331 5.331 13 C -0.013 4.013 14 C -0.170 4.170 15 C -0.152 4.152 16 C -0.144 4.144 17 H 0.091 0.909 18 C 0.031 3.969 19 N -0.324 5.324 20 C 0.018 3.982 21 C -0.381 4.381 22 H 0.084 0.916 23 C -0.196 4.196 24 N -0.553 5.553 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.001 3.999 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.017 0.983 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.125 0.875 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.374 21.589 7.211 22.803 hybrid contribution 0.705 -1.135 -0.456 1.412 sum 2.079 20.455 6.755 21.641 Atomic orbital electron populations 1.20228 0.85121 1.04401 1.03739 1.24728 0.98561 0.86497 1.01083 1.73609 0.89052 1.23238 1.20452 1.84483 1.21515 1.22420 1.68292 1.23505 0.95580 0.83293 0.99220 1.20522 0.83893 0.99478 1.07389 1.23096 0.96859 1.00071 0.99797 1.23125 1.00522 1.03891 0.91643 1.21873 0.92411 0.95576 1.14116 1.16918 0.77424 0.83734 0.84004 1.90877 1.49950 1.67480 1.30833 1.48161 1.68337 1.11651 1.04940 1.21676 0.99606 0.95691 0.84361 1.21903 0.98953 0.96739 0.99417 1.21556 1.01261 0.94425 0.97962 1.22291 0.99974 0.98284 0.93842 0.90856 1.20701 0.98155 0.89390 0.88651 1.43887 1.12016 1.63031 1.13471 1.20858 0.87542 0.95447 0.94388 1.19124 0.85954 1.14047 1.19024 0.91629 1.24969 0.96510 0.97108 1.00970 1.70061 1.22901 1.29418 1.32955 0.86308 0.83103 0.78564 0.78856 1.21537 1.21621 1.20655 1.21926 0.97106 0.76977 1.03856 0.89671 0.89932 0.89592 0.84252 0.87711 0.87313 0.87048 0.88038 0.91358 0.90778 0.91108 0.91651 0.92105 0.91663 0.94568 0.93129 0.95347 0.98318 0.93881 0.93831 0.87519 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.49 36.01 0.38 -0.37 16 2 C 0.05 0.67 7.59 -79.77 -0.61 0.07 16 3 N -0.36 -4.63 12.01 34.78 0.42 -4.21 16 4 O 0.09 1.16 10.86 18.65 0.20 1.36 16 5 C 0.05 0.58 6.89 -34.63 -0.24 0.34 16 6 C -0.09 -0.98 6.15 -91.77 -0.56 -1.54 16 7 C -0.16 -1.23 10.18 -26.73 -0.27 -1.50 16 8 C -0.15 -1.40 10.23 -26.73 -0.27 -1.67 16 9 C -0.23 -3.22 4.23 -102.89 -0.44 -3.65 16 10 C 0.59 9.70 7.52 -12.53 -0.09 9.61 16 11 O -0.52 -10.76 16.52 5.27 0.09 -10.68 16 12 N -0.60 -8.65 2.97 -174.02 -0.52 -9.16 16 13 C 0.11 1.19 6.33 -3.71 -0.02 1.17 16 14 C -0.13 -1.35 6.08 -26.61 -0.16 -1.52 16 15 C -0.11 -1.38 5.17 -26.70 -0.14 -1.52 16 16 C -0.12 -1.99 2.54 -90.49 -0.23 -2.22 16 17 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 18 C 0.16 3.10 5.14 -4.04 -0.02 3.08 16 19 N -0.60 -14.89 2.77 -181.12 -0.50 -15.39 16 20 C 0.16 4.04 7.94 59.85 0.48 4.51 16 21 C -0.25 -6.91 9.67 -15.06 -0.15 -7.05 16 22 H 0.07 1.76 7.86 -52.49 -0.41 1.34 16 23 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 24 N -0.91 -26.85 10.60 55.49 0.59 -26.26 16 25 Si 0.90 22.20 29.57 -169.99 -5.03 17.17 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.12 2.03 4.45 -3.69 -0.02 2.02 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.14 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.10 0.74 8.02 -51.93 -0.42 0.33 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.77 6.26 -51.93 -0.33 0.44 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 45 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 46 H 0.03 0.76 7.37 -51.93 -0.38 0.38 16 47 H 0.00 -0.04 6.28 -51.93 -0.33 -0.36 16 48 H 0.04 1.18 7.24 -51.93 -0.38 0.81 16 49 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.11 2.22 5.35 -51.93 -0.28 1.94 16 51 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 409.09 15.07 6.16 6.16 Total: -1.00 -32.99 409.09 -9.45 -42.43 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.40 Total: -1.16 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.46 Total: -0.27 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.01 Total: -55.03 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.29 Total: -9.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.99 -9.45 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713895386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.698 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds