Wall clock time and date at job start Wed Apr 1 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30010 * 127.33977 * 2 1 4 4 O 1.20660 * 112.30055 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15790 * 359.75994 * 4 3 2 6 6 C 1.50694 * 126.82645 * 180.30254 * 5 4 3 7 7 C 1.52997 * 117.50136 * 8.72245 * 6 5 4 8 8 C 1.53001 * 60.00217 * 252.51296 * 7 6 5 9 9 C 1.37354 * 106.33864 * 0.38594 * 5 4 3 10 10 C 1.47405 * 128.56126 * 179.91186 * 9 5 4 11 11 O 1.21613 * 120.00175 * 269.70152 * 10 9 5 12 12 N 1.34775 * 119.99957 * 89.70129 * 10 9 5 13 13 C 1.46930 * 120.63069 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.77035 * 233.60869 * 13 12 10 15 15 C 1.53035 * 109.31362 * 305.36094 * 14 13 12 16 16 C 1.53034 * 109.53821 * 61.36810 * 15 14 13 17 17 H 1.09011 * 109.49773 * 58.61791 * 16 15 14 18 18 C 1.53002 * 109.50069 * 178.68198 * 16 15 14 19 19 N 1.46498 * 109.47233 * 184.93775 * 18 16 15 20 20 C 1.46503 * 119.99945 * 269.99588 * 19 18 16 21 21 C 1.36935 * 120.00162 * 90.00113 * 19 18 16 22 22 H 1.08001 * 120.00061 * 338.00443 * 21 19 18 23 23 C 1.38813 * 119.99907 * 158.27540 * 21 19 18 24 24 N 1.31611 * 120.00274 * 347.64832 * 23 21 19 25 25 Si 1.86800 * 119.99801 * 167.64359 * 23 21 19 26 26 H 1.48496 * 109.47227 * 90.00052 * 25 23 21 27 27 H 1.48495 * 109.47143 * 210.00525 * 25 23 21 28 28 H 1.48507 * 109.47179 * 330.00029 * 25 23 21 29 29 C 1.46938 * 120.60401 * 180.02562 * 12 10 9 30 30 H 1.08999 * 109.47279 * 269.99798 * 1 2 3 31 31 H 1.09000 * 109.46776 * 29.99821 * 1 2 3 32 32 H 1.09000 * 109.47716 * 149.99679 * 1 2 3 33 33 H 1.09004 * 115.54854 * 154.43800 * 6 5 4 34 34 H 1.08998 * 117.49897 * 0.02562 * 7 6 5 35 35 H 1.09007 * 117.49622 * 145.02413 * 7 6 5 36 36 H 1.09003 * 117.49470 * 252.51434 * 8 7 6 37 37 H 1.08992 * 117.52058 * 107.48356 * 8 7 6 38 38 H 1.08995 * 109.59057 * 113.81937 * 13 12 10 39 39 H 1.08999 * 109.70308 * 353.46028 * 13 12 10 40 40 H 1.09010 * 109.49299 * 185.41246 * 14 13 12 41 41 H 1.09000 * 109.49882 * 65.31596 * 14 13 12 42 42 H 1.09000 * 109.45906 * 301.34699 * 15 14 13 43 43 H 1.09002 * 109.44518 * 181.38340 * 15 14 13 44 44 H 1.08997 * 109.46739 * 64.93621 * 18 16 15 45 45 H 1.09005 * 109.46910 * 304.93610 * 18 16 15 46 46 H 1.08999 * 109.47136 * 264.82997 * 20 19 18 47 47 H 1.09001 * 109.46693 * 24.82839 * 20 19 18 48 48 H 1.09000 * 109.46928 * 144.82596 * 20 19 18 49 49 H 0.96998 * 120.00508 * 180.02562 * 24 23 21 50 50 H 1.08994 * 109.61160 * 6.62270 * 29 12 10 51 51 H 1.09001 * 109.56251 * 246.19429 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7206 -0.0005 5 6 3.6494 -0.6010 0.0042 6 6 4.9711 -1.3248 0.0114 7 6 6.2343 -0.4870 0.2195 8 6 5.9221 -1.0707 -1.1599 9 6 2.3991 -1.1697 -0.0007 10 6 2.0399 -2.5993 -0.0003 11 8 1.8913 -3.1892 -1.0533 12 7 1.8763 -3.2527 1.1670 13 6 2.0519 -2.5534 2.4473 14 6 3.0610 -3.3303 3.2989 15 6 2.5973 -4.7824 3.4343 16 6 2.5338 -5.4306 2.0494 17 1 3.5170 -5.3850 1.5809 18 6 2.1017 -6.8917 2.1888 19 7 2.1547 -7.5438 0.8780 20 6 0.9767 -7.5343 0.0070 21 6 3.3052 -8.1622 0.4668 22 1 4.2528 -7.8868 0.9057 23 6 3.2542 -9.1390 -0.5181 24 7 2.0956 -9.6449 -0.8839 25 14 4.8302 -9.7356 -1.3243 26 1 5.3725 -10.8870 -0.5591 27 1 4.5435 -10.1586 -2.7185 28 1 5.8274 -8.6353 -1.3360 29 6 1.5188 -4.6778 1.1829 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 4.9556 -2.3275 0.4387 34 1 6.1093 0.5877 0.3516 35 1 7.0502 -0.9384 0.7840 36 1 6.5326 -1.9061 -1.5028 37 1 5.5916 -0.3803 -1.9359 38 1 1.0966 -2.5015 2.9694 39 1 2.4252 -1.5453 2.2673 40 1 3.1284 -2.8762 4.2876 41 1 4.0390 -3.3039 2.8184 42 1 1.6085 -4.8066 3.8923 43 1 3.3010 -5.3311 4.0602 44 1 1.0833 -6.9342 2.5748 45 1 2.7731 -7.4050 2.8773 46 1 0.4119 -8.4555 0.1498 47 1 0.3474 -6.6799 0.2564 48 1 1.2944 -7.4603 -1.0330 49 1 2.0600 -10.3278 -1.5719 50 1 1.5418 -5.0721 0.1671 51 1 0.5197 -4.7988 1.6016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713895386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:53 Heat of formation + Delta-G solvation = 54.013214 kcal Electronic energy + Delta-G solvation = -32269.203399 eV Core-core repulsion = 28172.698808 eV Total energy + Delta-G solvation = -4096.504591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.02171 -41.26388 -38.97136 -38.39529 -37.22576 -35.73574 -34.47939 -33.21208 -32.81445 -31.62475 -29.84191 -28.37990 -27.48805 -26.89591 -25.05418 -24.54860 -23.90274 -23.36483 -22.46113 -21.49023 -20.80160 -20.07426 -19.02691 -18.71401 -18.51371 -17.73589 -17.26378 -16.91291 -16.84415 -16.10326 -15.75765 -15.51903 -15.38694 -15.05741 -14.90525 -14.69019 -14.45175 -14.32911 -14.15452 -13.99871 -13.94786 -13.81643 -13.14683 -13.11580 -13.07242 -12.78129 -12.62123 -12.57281 -12.48064 -12.34574 -12.20611 -12.08849 -11.94912 -11.89068 -11.73311 -11.56762 -11.49889 -11.36815 -11.27431 -10.95686 -10.59890 -10.23276 -9.72326 -8.74017 -7.80539 -5.27948 0.11786 0.75896 1.23924 1.42926 1.45770 1.53749 1.56446 2.02588 2.50892 2.71661 2.96882 3.09000 3.32738 3.44696 3.58888 3.67057 3.78412 3.87114 3.90173 3.97775 4.08316 4.11258 4.14081 4.34658 4.37603 4.43247 4.50841 4.54017 4.59682 4.64640 4.69687 4.77191 4.80811 4.85202 4.85953 4.90104 4.92664 4.98476 5.03210 5.07088 5.13575 5.15341 5.22585 5.35966 5.42609 5.49847 5.59025 5.63583 5.72202 6.26129 6.34588 6.96335 7.06840 7.17146 7.90932 8.33568 9.22419 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.003404 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.041073 B = 8223.210941 C = 8959.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.367 5.367 4 O 0.096 5.904 5 C 0.063 3.937 6 C -0.119 4.119 7 C -0.131 4.131 8 C -0.161 4.161 9 C -0.259 4.259 10 C 0.596 3.404 11 O -0.576 6.576 12 N -0.591 5.591 13 C 0.106 3.894 14 C -0.125 4.125 15 C -0.107 4.107 16 C -0.106 4.106 17 H 0.042 0.958 18 C 0.156 3.844 19 N -0.618 5.618 20 C 0.183 3.817 21 C -0.255 4.255 22 H 0.069 0.931 23 C -0.056 4.056 24 N -0.941 5.941 25 Si 0.962 3.038 26 H -0.280 1.280 27 H -0.297 1.297 28 H -0.274 1.274 29 C 0.127 3.873 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.003 0.997 47 H 0.029 0.971 48 H 0.004 0.996 49 H 0.246 0.754 50 H 0.059 0.941 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 23.091 10.656 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 N -0.076 5.076 4 O 0.037 5.963 5 C 0.000 4.000 6 C -0.138 4.138 7 C -0.167 4.167 8 C -0.198 4.198 9 C -0.266 4.266 10 C 0.383 3.617 11 O -0.456 6.456 12 N -0.322 5.322 13 C -0.015 4.015 14 C -0.163 4.163 15 C -0.145 4.145 16 C -0.128 4.128 17 H 0.061 0.939 18 C 0.029 3.971 19 N -0.341 5.341 20 C 0.038 3.962 21 C -0.386 4.386 22 H 0.087 0.913 23 C -0.250 4.250 24 N -0.588 5.588 25 Si 0.791 3.209 26 H -0.206 1.206 27 H -0.223 1.223 28 H -0.199 1.199 29 C 0.005 3.995 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.021 0.979 47 H 0.047 0.953 48 H 0.023 0.977 49 H 0.055 0.945 50 H 0.078 0.922 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.376 23.977 10.012 26.091 hybrid contribution 0.402 -1.805 -1.247 2.230 sum 2.778 22.172 8.765 24.003 Atomic orbital electron populations 1.20363 0.83303 1.04555 1.05307 1.25117 0.99696 0.85706 1.00008 1.73598 0.89233 1.23349 1.21396 1.84474 1.21424 1.22166 1.68282 1.23762 0.95822 0.83226 0.97205 1.20590 0.84269 0.99625 1.09348 1.23225 0.95094 1.00285 0.98131 1.23220 1.00053 1.04333 0.92198 1.21667 0.93664 0.94474 1.16830 1.17225 0.76391 0.84575 0.83551 1.90843 1.52774 1.68974 1.32981 1.48193 1.67110 1.10791 1.06082 1.21983 1.01239 0.95766 0.82545 1.21889 0.98056 0.95348 1.01023 1.21514 1.02855 0.95356 0.94731 1.22002 0.97855 0.96466 0.96507 0.93929 1.20938 0.99379 0.90613 0.86122 1.44108 1.11139 1.63358 1.15478 1.20500 0.87789 0.95366 0.92535 1.19463 0.87082 1.13331 1.18689 0.91310 1.25724 0.99316 0.97949 1.02043 1.70227 1.24768 1.30219 1.33587 0.85341 0.79870 0.78285 0.77411 1.20629 1.22345 1.19866 1.21663 0.98128 0.78387 1.01286 0.87307 0.88543 0.90610 0.85317 0.86670 0.85289 0.86641 0.88215 0.88930 0.89911 0.87491 0.92494 0.90159 0.90777 0.92757 0.93036 0.97855 0.95263 0.97750 0.94495 0.92249 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.49 71.24 0.75 -0.63 16 2 C 0.06 1.37 7.59 45.16 0.34 1.71 16 3 N -0.37 -9.00 12.01 -44.78 -0.54 -9.54 16 4 O 0.10 2.22 10.86 76.98 0.84 3.06 16 5 C 0.06 1.50 6.89 25.48 0.18 1.68 16 6 C -0.12 -2.38 6.15 -11.54 -0.07 -2.45 16 7 C -0.13 -1.68 10.18 30.59 0.31 -1.36 16 8 C -0.16 -2.75 10.23 30.60 0.31 -2.43 16 9 C -0.26 -7.08 4.23 -18.74 -0.08 -7.16 16 10 C 0.60 19.86 7.52 86.66 0.65 20.51 16 11 O -0.58 -25.46 16.52 -4.07 -0.07 -25.53 16 12 N -0.59 -16.68 2.97 -822.72 -2.45 -19.12 16 13 C 0.11 1.98 6.33 86.36 0.55 2.53 16 14 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 15 C -0.11 -2.23 5.17 30.62 0.16 -2.08 16 16 C -0.11 -3.38 2.54 -10.71 -0.03 -3.41 16 17 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 18 C 0.16 5.95 5.14 86.38 0.44 6.40 16 19 N -0.62 -31.25 2.77 -726.93 -2.01 -33.26 16 20 C 0.18 9.50 7.94 127.77 1.01 10.52 16 21 C -0.26 -14.31 9.67 84.03 0.81 -13.49 16 22 H 0.07 3.73 7.86 -2.91 -0.02 3.70 16 23 C -0.06 -3.24 5.12 84.86 0.43 -2.80 16 24 N -0.94 -57.74 10.60 21.65 0.23 -57.51 16 25 Si 0.96 46.69 29.57 68.60 2.03 48.71 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 29 C 0.13 4.21 4.45 86.37 0.38 4.60 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.11 1.28 8.02 -2.39 -0.02 1.26 16 35 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.47 6.26 -2.39 -0.01 1.46 16 40 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 45 H 0.05 1.95 8.04 -2.38 -0.02 1.94 16 46 H 0.00 0.18 7.37 -2.39 -0.02 0.16 16 47 H 0.03 1.30 6.28 -2.39 -0.01 1.28 16 48 H 0.00 0.22 7.24 -2.39 -0.02 0.20 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.06 2.58 5.35 -2.39 -0.01 2.57 16 51 H 0.08 2.29 8.10 -2.39 -0.02 2.27 16 Total: -1.00 -76.17 409.09 5.30 -70.87 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.92 Total: 12.12 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 6.35 Total: 10.20 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -4.77 Total: -119.43 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.77 Total: -22.47 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -76.17 5.30 -70.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713895386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.882 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds