Wall clock time and date at job start Wed Apr 1 2020 04:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34865 * 119.10332 * 2 1 4 4 C 1.41670 * 119.33916 * 179.69344 * 3 2 1 5 5 O 1.22085 * 121.06892 * 180.27680 * 4 3 2 6 6 C 1.47100 * 117.86035 * 0.52058 * 4 3 2 7 7 C 1.47292 * 120.88056 * 179.77777 * 6 4 3 8 8 O 1.21614 * 120.00272 * 311.40790 * 7 6 4 9 9 N 1.34777 * 119.99830 * 131.40220 * 7 6 4 10 10 C 1.46934 * 120.60477 * 354.53625 * 9 7 6 11 11 C 1.53192 * 108.77113 * 233.52823 * 10 9 7 12 12 C 1.53036 * 109.34466 * 305.41615 * 11 10 9 13 13 C 1.53041 * 109.53494 * 61.34372 * 12 11 10 14 14 H 1.08997 * 109.49719 * 58.62365 * 13 12 11 15 15 C 1.53002 * 109.49632 * 178.68793 * 13 12 11 16 16 C 1.52999 * 109.47086 * 185.00334 * 15 13 12 17 17 N 1.46499 * 109.47032 * 179.97438 * 16 15 13 18 18 C 1.36944 * 119.99977 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99946 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99687 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99410 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00309 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47636 * 89.99420 * 22 20 18 24 24 H 1.48498 * 109.46997 * 209.99976 * 22 20 18 25 25 H 1.48502 * 109.46870 * 329.99338 * 22 20 18 26 26 C 1.46929 * 120.63010 * 174.51177 * 9 7 6 27 27 C 1.37993 * 118.23954 * 359.50657 * 6 4 3 28 28 N 1.34341 * 120.36501 * 0.22781 * 27 6 4 29 29 C 1.46505 * 118.80086 * 180.02562 * 28 27 6 30 30 H 1.08994 * 109.47078 * 264.13911 * 1 2 3 31 31 H 1.09003 * 109.46571 * 24.13757 * 1 2 3 32 32 H 1.08997 * 109.47242 * 144.13651 * 1 2 3 33 33 H 1.07998 * 120.33110 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.56045 * 113.75967 * 10 9 7 35 35 H 1.09001 * 109.61825 * 353.33521 * 10 9 7 36 36 H 1.09002 * 109.49785 * 185.44686 * 11 10 9 37 37 H 1.09002 * 109.49321 * 65.38585 * 11 10 9 38 38 H 1.08990 * 109.46286 * 181.36851 * 12 11 10 39 39 H 1.08999 * 109.45921 * 301.32930 * 12 11 10 40 40 H 1.09004 * 109.47072 * 305.00191 * 15 13 12 41 41 H 1.08993 * 109.47368 * 65.00226 * 15 13 12 42 42 H 1.08996 * 109.47226 * 299.99610 * 16 15 13 43 43 H 1.09005 * 109.47565 * 60.00241 * 16 15 13 44 44 H 0.97006 * 120.00239 * 359.97438 * 17 16 15 45 45 H 0.97006 * 119.99419 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58737 * 6.64364 * 26 9 7 47 47 H 1.09002 * 109.58575 * 246.22320 * 26 9 7 48 48 H 1.07996 * 119.81622 * 180.24989 * 27 6 4 49 49 H 1.08999 * 109.46962 * 95.85806 * 29 28 27 50 50 H 1.09000 * 109.47061 * 215.85764 * 29 28 27 51 51 H 1.09002 * 109.47418 * 335.85918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5797 1.1842 0.0066 5 8 4.2054 2.2325 0.0119 6 6 4.2725 -0.1134 0.0014 7 6 5.7436 -0.1849 0.0029 8 8 6.3858 0.4850 -0.7832 9 7 6.3782 -0.9927 0.8754 10 6 5.6249 -1.7163 1.9088 11 6 6.2444 -1.4098 3.2759 12 6 7.7387 -1.7385 3.2405 13 6 8.4298 -0.8658 2.1903 14 1 8.2751 0.1857 2.4320 15 6 9.9289 -1.1718 2.1784 16 6 10.6374 -0.2136 1.2189 17 7 12.0728 -0.5062 1.2080 18 6 12.9154 0.2283 0.4167 19 1 12.5217 1.0235 -0.1988 20 6 14.2756 -0.0487 0.4069 21 7 15.0852 0.6570 -0.3540 22 14 14.9566 -1.4236 1.4722 23 1 14.9445 -2.6957 0.7062 24 1 16.3499 -1.0982 1.8694 25 1 14.1167 -1.5700 2.6881 26 6 7.8357 -1.1667 0.8107 27 6 3.5076 -1.2619 0.0009 28 7 2.1664 -1.1847 0.0004 29 6 1.3879 -2.4258 0.0005 30 1 -0.3633 -0.1049 1.0222 31 1 -0.3632 0.9379 -0.4203 32 1 -0.3633 -0.8328 -0.6020 33 1 1.6138 2.1083 -0.0004 34 1 5.6774 -2.7878 1.7158 35 1 4.5844 -1.3916 1.8981 36 1 5.7569 -2.0150 4.0403 37 1 6.1097 -0.3533 3.5077 38 1 8.1766 -1.5441 4.2194 39 1 7.8733 -2.7895 2.9849 40 1 10.3334 -1.0455 3.1826 41 1 10.0875 -2.1987 1.8493 42 1 10.2329 -0.3398 0.2147 43 1 10.4789 0.8135 1.5480 44 1 12.4265 -1.2202 1.7612 45 1 16.0358 0.4637 -0.3607 46 1 8.2534 -0.4795 0.0750 47 1 8.0689 -2.1934 0.5285 48 1 3.9898 -2.2283 0.0012 49 1 1.1057 -2.6776 1.0227 50 1 0.4895 -2.2911 -0.6018 51 1 1.9894 -3.2320 -0.4195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714214235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:17 Heat of formation + Delta-G solvation = -19.345109 kcal Electronic energy + Delta-G solvation = -30826.957435 eV Core-core repulsion = 26727.271788 eV Total energy + Delta-G solvation = -4099.685647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69566 -40.03743 -38.30230 -37.43407 -35.45304 -34.11864 -33.47860 -32.74525 -32.12233 -30.89177 -28.96488 -27.63146 -27.40877 -25.76228 -24.23463 -24.15662 -22.28797 -22.11620 -20.88666 -20.47035 -19.54535 -18.26939 -17.69896 -17.37419 -16.89872 -16.60441 -16.14702 -15.89155 -15.19930 -14.81638 -14.70588 -14.51386 -14.27992 -14.10963 -14.04908 -13.90906 -13.68478 -13.56400 -13.46476 -13.37157 -13.12365 -12.98474 -12.70432 -12.67791 -12.48430 -12.36270 -12.19446 -11.52824 -11.26309 -11.21595 -11.12484 -10.84947 -10.51772 -10.46567 -10.17593 -10.08387 -9.94959 -9.78401 -9.47760 -9.43983 -8.77582 -8.64723 -8.27416 -7.10890 -5.65571 -3.00497 0.58649 0.91601 1.86782 2.67793 2.95726 3.44195 3.46402 3.48708 3.51384 3.61984 3.91599 4.06492 4.19249 4.30095 4.45960 4.51624 4.59848 4.67335 4.68365 4.72333 4.75767 4.78769 4.88932 4.96258 5.06794 5.13495 5.17939 5.30498 5.39346 5.42870 5.52021 5.59731 5.60927 5.66508 5.77114 5.89274 5.92353 5.95173 6.04257 6.11275 6.14022 6.22442 6.31626 6.35719 6.42404 6.56221 6.90945 6.92398 7.37504 7.90412 8.13048 8.25934 8.53712 9.33292 10.05343 10.25737 11.53148 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002160 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.207646 B =12961.757519 C =13689.681044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 C -0.269 4.269 4 C 0.409 3.591 5 O -0.489 6.489 6 C -0.289 4.289 7 C 0.579 3.421 8 O -0.510 6.510 9 N -0.613 5.613 10 C 0.104 3.896 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.097 4.097 14 H 0.077 0.923 15 C -0.121 4.121 16 C 0.153 3.847 17 N -0.758 5.758 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.000 4.000 21 N -0.936 5.936 22 Si 0.886 3.114 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.116 3.884 27 C 0.165 3.835 28 N -0.473 5.473 29 C 0.049 3.951 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.026 0.974 44 H 0.359 0.641 45 H 0.258 0.742 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.169 0.831 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.809 -13.363 6.511 42.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 C -0.293 4.293 4 C 0.295 3.705 5 O -0.371 6.371 6 C -0.300 4.300 7 C 0.366 3.634 8 O -0.384 6.384 9 N -0.347 5.347 10 C -0.019 4.019 11 C -0.173 4.173 12 C -0.151 4.151 13 C -0.117 4.117 14 H 0.095 0.905 15 C -0.160 4.160 16 C 0.026 3.974 17 N -0.403 5.403 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.195 4.195 21 N -0.584 5.584 22 Si 0.717 3.283 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.005 4.005 27 C 0.036 3.964 28 N -0.160 5.160 29 C -0.092 4.092 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.170 0.830 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.192 0.808 45 H 0.068 0.932 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.186 0.814 49 H 0.101 0.899 50 H 0.112 0.888 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -39.172 -12.412 5.896 41.512 hybrid contribution 0.609 -1.149 0.820 1.538 sum -38.563 -13.561 6.717 41.426 Atomic orbital electron populations 1.21190 0.88001 1.05122 1.04106 1.20263 0.94871 0.84949 0.94923 1.22242 0.96134 0.97294 1.13643 1.18165 0.88393 0.87668 0.76233 1.90836 1.70016 1.33380 1.42842 1.22465 0.94497 0.95308 1.17712 1.17530 0.85966 0.79046 0.80816 1.90853 1.66856 1.41303 1.39407 1.48073 1.08218 1.46439 1.32001 1.21847 0.95991 0.96126 0.87979 1.21911 0.96712 1.02513 0.96151 1.21577 0.94271 0.99830 0.99451 1.21460 0.95067 1.00713 0.94462 0.90459 1.21770 0.92983 1.00390 1.00822 1.20711 0.84259 0.96012 0.96396 1.42730 1.02901 1.41376 1.53288 1.19124 0.88527 1.12011 1.17306 0.89169 1.24694 0.95920 0.99218 0.99702 1.69719 1.03429 1.42474 1.42813 0.86508 0.78280 0.82851 0.80680 1.21175 1.21817 1.20409 1.21813 0.77911 1.02268 0.98550 1.22142 0.81976 0.99840 0.92488 1.42536 1.05200 1.07189 1.61106 1.22539 0.97841 0.84352 1.04489 0.89284 0.88816 0.90120 0.82955 0.91501 0.90247 0.90942 0.91329 0.91482 0.91764 0.91648 0.91885 0.95211 0.95558 0.80822 0.93185 0.87992 0.91361 0.81380 0.89869 0.88797 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.11 9.35 36.01 0.34 0.23 16 2 C 0.16 0.77 6.64 -82.13 -0.55 0.23 16 3 C -0.27 -2.45 9.57 -39.47 -0.38 -2.83 16 4 C 0.41 5.87 6.95 -34.68 -0.24 5.62 16 5 O -0.49 -9.69 17.30 3.02 0.05 -9.63 16 6 C -0.29 -3.51 5.00 -102.71 -0.51 -4.03 16 7 C 0.58 9.05 7.06 -12.58 -0.09 8.96 16 8 O -0.51 -10.78 16.19 3.44 0.06 -10.72 16 9 N -0.61 -7.65 2.97 -174.08 -0.52 -8.17 16 10 C 0.10 0.82 5.27 -3.71 -0.02 0.80 16 11 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 12 C -0.11 -1.13 5.17 -26.69 -0.14 -1.27 16 13 C -0.10 -1.30 2.34 -90.50 -0.21 -1.51 16 14 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.12 -1.91 4.80 -26.73 -0.13 -2.04 16 16 C 0.15 3.24 6.02 -4.04 -0.02 3.21 16 17 N -0.76 -19.35 5.41 -59.91 -0.32 -19.68 16 18 C -0.24 -7.28 10.47 -15.05 -0.16 -7.44 16 19 H 0.09 2.96 8.06 -52.49 -0.42 2.53 16 20 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 21 N -0.94 -30.85 13.97 55.49 0.78 -30.08 16 22 Si 0.89 23.05 27.74 -169.99 -4.71 18.34 16 23 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 26 C 0.12 1.62 5.34 -3.71 -0.02 1.60 16 27 C 0.16 1.05 7.81 -16.54 -0.13 0.92 16 28 N -0.47 -1.82 2.97 -119.74 -0.36 -2.17 16 29 C 0.05 -0.04 9.98 59.85 0.60 0.56 16 30 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.09 0.07 7.97 -51.93 -0.41 -0.34 16 32 H 0.08 -0.08 6.00 -51.93 -0.31 -0.39 16 33 H 0.15 1.20 8.01 -52.49 -0.42 0.78 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.52 5.13 -51.93 -0.27 0.26 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.65 6.70 -51.93 -0.35 0.30 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.36 8.79 5.53 -40.82 -0.23 8.56 16 45 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 46 H 0.10 1.79 5.72 -51.93 -0.30 1.49 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.17 0.57 7.18 -52.49 -0.38 0.19 16 49 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 50 H 0.09 -0.20 5.93 -51.93 -0.31 -0.51 16 51 H 0.09 -0.18 7.86 -51.93 -0.41 -0.59 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -44.01 400.71 -8.95 -52.96 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.04 Total: 1.46 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.92 Total: 1.65 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.42 Total: -60.10 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.11 Total: -20.35 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.71 Total: 18.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -44.01 -8.95 -52.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714214235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.617 kcal (2) G-P(sol) polarization free energy of solvation -44.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds