Wall clock time and date at job start Wed Apr 1 2020 04:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34865 * 119.10332 * 2 1 4 4 C 1.41670 * 119.33916 * 179.69344 * 3 2 1 5 5 O 1.22085 * 121.06892 * 180.27680 * 4 3 2 6 6 C 1.47100 * 117.86035 * 0.52058 * 4 3 2 7 7 C 1.47292 * 120.88056 * 179.77777 * 6 4 3 8 8 O 1.21614 * 120.00272 * 311.40790 * 7 6 4 9 9 N 1.34777 * 119.99830 * 131.40220 * 7 6 4 10 10 C 1.46934 * 120.60477 * 354.53625 * 9 7 6 11 11 C 1.53192 * 108.77113 * 233.52823 * 10 9 7 12 12 C 1.53036 * 109.34466 * 305.41615 * 11 10 9 13 13 C 1.53041 * 109.53494 * 61.34372 * 12 11 10 14 14 H 1.08997 * 109.49719 * 58.62365 * 13 12 11 15 15 C 1.53002 * 109.49632 * 178.68793 * 13 12 11 16 16 C 1.52999 * 109.47086 * 185.00334 * 15 13 12 17 17 N 1.46499 * 109.47032 * 179.97438 * 16 15 13 18 18 C 1.36944 * 119.99977 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99946 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99687 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99410 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00309 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47636 * 89.99420 * 22 20 18 24 24 H 1.48498 * 109.46997 * 209.99976 * 22 20 18 25 25 H 1.48502 * 109.46870 * 329.99338 * 22 20 18 26 26 C 1.46929 * 120.63010 * 174.51177 * 9 7 6 27 27 C 1.37993 * 118.23954 * 359.50657 * 6 4 3 28 28 N 1.34341 * 120.36501 * 0.22781 * 27 6 4 29 29 C 1.46505 * 118.80086 * 180.02562 * 28 27 6 30 30 H 1.08994 * 109.47078 * 264.13911 * 1 2 3 31 31 H 1.09003 * 109.46571 * 24.13757 * 1 2 3 32 32 H 1.08997 * 109.47242 * 144.13651 * 1 2 3 33 33 H 1.07998 * 120.33110 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.56045 * 113.75967 * 10 9 7 35 35 H 1.09001 * 109.61825 * 353.33521 * 10 9 7 36 36 H 1.09002 * 109.49785 * 185.44686 * 11 10 9 37 37 H 1.09002 * 109.49321 * 65.38585 * 11 10 9 38 38 H 1.08990 * 109.46286 * 181.36851 * 12 11 10 39 39 H 1.08999 * 109.45921 * 301.32930 * 12 11 10 40 40 H 1.09004 * 109.47072 * 305.00191 * 15 13 12 41 41 H 1.08993 * 109.47368 * 65.00226 * 15 13 12 42 42 H 1.08996 * 109.47226 * 299.99610 * 16 15 13 43 43 H 1.09005 * 109.47565 * 60.00241 * 16 15 13 44 44 H 0.97006 * 120.00239 * 359.97438 * 17 16 15 45 45 H 0.97006 * 119.99419 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58737 * 6.64364 * 26 9 7 47 47 H 1.09002 * 109.58575 * 246.22320 * 26 9 7 48 48 H 1.07996 * 119.81622 * 180.24989 * 27 6 4 49 49 H 1.08999 * 109.46962 * 95.85806 * 29 28 27 50 50 H 1.09000 * 109.47061 * 215.85764 * 29 28 27 51 51 H 1.09002 * 109.47418 * 335.85918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5797 1.1842 0.0066 5 8 4.2054 2.2325 0.0119 6 6 4.2725 -0.1134 0.0014 7 6 5.7436 -0.1849 0.0029 8 8 6.3858 0.4850 -0.7832 9 7 6.3782 -0.9927 0.8754 10 6 5.6249 -1.7163 1.9088 11 6 6.2444 -1.4098 3.2759 12 6 7.7387 -1.7385 3.2405 13 6 8.4298 -0.8658 2.1903 14 1 8.2751 0.1857 2.4320 15 6 9.9289 -1.1718 2.1784 16 6 10.6374 -0.2136 1.2189 17 7 12.0728 -0.5062 1.2080 18 6 12.9154 0.2283 0.4167 19 1 12.5217 1.0235 -0.1988 20 6 14.2756 -0.0487 0.4069 21 7 15.0852 0.6570 -0.3540 22 14 14.9566 -1.4236 1.4722 23 1 14.9445 -2.6957 0.7062 24 1 16.3499 -1.0982 1.8694 25 1 14.1167 -1.5700 2.6881 26 6 7.8357 -1.1667 0.8107 27 6 3.5076 -1.2619 0.0009 28 7 2.1664 -1.1847 0.0004 29 6 1.3879 -2.4258 0.0005 30 1 -0.3633 -0.1049 1.0222 31 1 -0.3632 0.9379 -0.4203 32 1 -0.3633 -0.8328 -0.6020 33 1 1.6138 2.1083 -0.0004 34 1 5.6774 -2.7878 1.7158 35 1 4.5844 -1.3916 1.8981 36 1 5.7569 -2.0150 4.0403 37 1 6.1097 -0.3533 3.5077 38 1 8.1766 -1.5441 4.2194 39 1 7.8733 -2.7895 2.9849 40 1 10.3334 -1.0455 3.1826 41 1 10.0875 -2.1987 1.8493 42 1 10.2329 -0.3398 0.2147 43 1 10.4789 0.8135 1.5480 44 1 12.4265 -1.2202 1.7612 45 1 16.0358 0.4637 -0.3607 46 1 8.2534 -0.4795 0.0750 47 1 8.0689 -2.1934 0.5285 48 1 3.9898 -2.2283 0.0012 49 1 1.1057 -2.6776 1.0227 50 1 0.4895 -2.2911 -0.6018 51 1 1.9894 -3.2320 -0.4195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714214235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:16 Heat of formation + Delta-G solvation = -53.815777 kcal Electronic energy + Delta-G solvation = -30828.452195 eV Core-core repulsion = 26727.271788 eV Total energy + Delta-G solvation = -4101.180407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35293 -40.98352 -39.26256 -38.60379 -37.12345 -35.28445 -34.29125 -33.75835 -33.26926 -32.59123 -29.76685 -28.84770 -27.70556 -26.58260 -25.77896 -24.91592 -23.84185 -22.87847 -22.33288 -21.51038 -20.40468 -19.67336 -19.00349 -18.34369 -17.57663 -17.36095 -16.83589 -16.76402 -16.60482 -16.14202 -15.90425 -15.70461 -15.48087 -15.12568 -14.95139 -14.90667 -14.79802 -14.43086 -14.32668 -14.19813 -13.91140 -13.83552 -13.80407 -13.70875 -13.32811 -13.12956 -12.92220 -12.70375 -12.62637 -12.52365 -12.31003 -12.11508 -11.95364 -11.86088 -11.76427 -11.60832 -11.24953 -11.17243 -10.98883 -10.48728 -10.38047 -9.66842 -9.36242 -9.06468 -8.06748 -5.42748 -0.12901 0.28525 1.34577 1.41761 1.42807 1.49262 1.61451 2.02652 2.46291 2.62724 3.22881 3.26023 3.41600 3.48718 3.59757 3.77410 3.79863 3.84919 3.91092 4.07934 4.09356 4.26508 4.30374 4.37870 4.44911 4.45732 4.46496 4.50038 4.62167 4.68493 4.71971 4.74256 4.83026 4.83815 4.85558 4.88768 4.91064 5.02291 5.09780 5.17548 5.20046 5.26639 5.29371 5.36105 5.49727 5.56402 5.69784 5.71665 5.79382 6.16775 6.39359 7.02583 7.02816 7.18711 7.76058 8.01232 9.15347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002160 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.207646 B =12961.757519 C =13689.681044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.194 3.806 3 C -0.309 4.309 4 C 0.381 3.619 5 O -0.589 6.589 6 C -0.345 4.345 7 C 0.570 3.430 8 O -0.593 6.593 9 N -0.606 5.606 10 C 0.097 3.903 11 C -0.132 4.132 12 C -0.106 4.106 13 C -0.091 4.091 14 H 0.043 0.957 15 C -0.105 4.105 16 C 0.150 3.850 17 N -0.755 5.755 18 C -0.248 4.248 19 H 0.041 0.959 20 C -0.070 4.070 21 N -0.986 5.986 22 Si 0.971 3.029 23 H -0.271 1.271 24 H -0.292 1.292 25 H -0.246 1.246 26 C 0.116 3.884 27 C 0.217 3.783 28 N -0.454 5.454 29 C 0.032 3.968 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.002 0.998 44 H 0.371 0.629 45 H 0.260 0.740 46 H 0.048 0.952 47 H 0.095 0.905 48 H 0.215 0.785 49 H 0.112 0.888 50 H 0.117 0.883 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -44.213 -20.547 9.565 49.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 C -0.332 4.332 4 C 0.276 3.724 5 O -0.479 6.479 6 C -0.356 4.356 7 C 0.360 3.640 8 O -0.473 6.473 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.144 4.144 13 C -0.111 4.111 14 H 0.062 0.938 15 C -0.143 4.143 16 C 0.024 3.976 17 N -0.401 5.401 18 C -0.379 4.379 19 H 0.059 0.941 20 C -0.261 4.261 21 N -0.636 5.636 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.218 1.218 25 H -0.171 1.171 26 C -0.007 4.007 27 C 0.083 3.917 28 N -0.137 5.137 29 C -0.106 4.106 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.169 0.831 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.205 0.795 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.113 0.887 48 H 0.231 0.769 49 H 0.131 0.869 50 H 0.136 0.864 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -43.708 -19.698 9.012 48.781 hybrid contribution 1.740 0.990 -0.197 2.011 sum -41.968 -18.709 8.815 46.787 Atomic orbital electron populations 1.21417 0.83812 1.06745 1.06289 1.20813 0.97042 0.83856 0.89766 1.22064 0.93724 0.99639 1.17756 1.19019 0.90616 0.87609 0.75158 1.90770 1.71958 1.36104 1.49101 1.22009 0.92899 0.96543 1.24132 1.18213 0.87574 0.78085 0.80100 1.90790 1.68871 1.44710 1.42963 1.48176 1.07680 1.45836 1.32146 1.22305 0.96048 0.97942 0.86113 1.21933 0.95960 1.01666 0.97461 1.21556 0.94818 1.00098 0.97893 1.21377 0.94061 0.99972 0.95660 0.93819 1.21650 0.93671 0.99575 0.99420 1.20832 0.82744 0.96626 0.97409 1.42635 1.03890 1.40996 1.52596 1.19029 0.89742 1.11555 1.17573 0.94092 1.25741 0.95941 1.02779 1.01639 1.69939 1.03876 1.44869 1.44911 0.85180 0.77318 0.78544 0.79320 1.19636 1.21822 1.17074 1.21679 0.79259 1.02150 0.97600 1.22566 0.82752 0.99276 0.87060 1.43218 1.04842 1.08999 1.56629 1.23158 0.98373 0.81882 1.07206 0.86728 0.88735 0.86737 0.83120 0.86855 0.88713 0.86774 0.94175 0.90827 0.89005 0.90540 0.89639 0.96746 0.98014 0.79548 0.93113 0.93328 0.88680 0.76888 0.86934 0.86437 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.44 9.35 71.24 0.67 1.11 16 2 C 0.19 1.32 6.64 41.21 0.27 1.59 16 3 C -0.31 -6.02 9.57 22.34 0.21 -5.80 16 4 C 0.38 12.49 6.95 25.45 0.18 12.67 16 5 O -0.59 -27.75 17.30 -3.85 -0.07 -27.82 16 6 C -0.35 -8.89 5.00 -18.63 -0.09 -8.98 16 7 C 0.57 19.73 7.06 86.62 0.61 20.34 16 8 O -0.59 -29.08 16.19 -2.33 -0.04 -29.12 16 9 N -0.61 -15.42 2.97 -822.91 -2.45 -17.86 16 10 C 0.10 1.17 5.27 86.36 0.46 1.62 16 11 C -0.13 -1.74 6.08 30.67 0.19 -1.56 16 12 C -0.11 -1.75 5.17 30.62 0.16 -1.59 16 13 C -0.09 -2.46 2.34 -10.72 -0.03 -2.48 16 14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 15 C -0.10 -3.25 4.80 30.59 0.15 -3.10 16 16 C 0.15 6.76 6.02 86.38 0.52 7.28 16 17 N -0.75 -39.46 5.41 -343.45 -1.86 -41.31 16 18 C -0.25 -15.87 10.47 84.03 0.88 -14.99 16 19 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16 20 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 21 N -0.99 -67.59 13.97 21.65 0.30 -67.29 16 22 Si 0.97 47.60 27.74 68.60 1.90 49.50 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.25 -10.73 6.52 99.48 0.65 -10.08 16 26 C 0.12 3.38 5.34 86.36 0.46 3.84 16 27 C 0.22 2.02 7.81 84.25 0.66 2.67 16 28 N -0.45 -1.17 2.97 -532.76 -1.58 -2.76 16 29 C 0.03 -0.30 9.98 127.77 1.28 0.97 16 30 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.09 -0.20 7.97 -2.39 -0.02 -0.22 16 32 H 0.11 -1.07 6.00 -2.39 -0.01 -1.08 16 33 H 0.15 2.77 8.01 -2.91 -0.02 2.74 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.86 5.13 -2.39 -0.01 0.85 16 36 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.01 0.70 6.70 -2.39 -0.02 0.68 16 43 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 44 H 0.37 17.57 5.53 -92.70 -0.51 17.05 16 45 H 0.26 16.73 8.31 -92.70 -0.77 15.96 16 46 H 0.05 1.95 5.72 -2.39 -0.01 1.93 16 47 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.21 0.09 7.18 -2.91 -0.02 0.07 16 49 H 0.11 -1.48 8.14 -2.39 -0.02 -1.50 16 50 H 0.12 -1.51 5.93 -2.39 -0.01 -1.52 16 51 H 0.12 -1.46 7.86 -2.39 -0.02 -1.48 16 Total: -1.00 -118.37 400.71 3.62 -114.76 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.37 Total: 12.28 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 7.03 Total: 9.62 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -5.58 Total: -129.22 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -0.10 Total: -56.93 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.90 Total: 49.50 kcal Total: -118.37 3.62 -114.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714214235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.942 kcal (2) G-P(sol) polarization free energy of solvation -118.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds