Wall clock time and date at job start Wed Apr 1 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34871 * 119.09733 * 2 1 4 4 C 1.41663 * 119.33807 * 180.02562 * 3 2 1 5 5 O 1.22092 * 121.06812 * 179.97438 * 4 3 2 6 6 C 1.47098 * 117.86559 * 359.97438 * 4 3 2 7 7 C 1.47296 * 120.88406 * 179.97438 * 6 4 3 8 8 O 1.21612 * 119.99870 * 34.33532 * 7 6 4 9 9 N 1.34774 * 119.99893 * 214.06220 * 7 6 4 10 10 C 1.46935 * 120.62947 * 356.98273 * 9 7 6 11 11 C 1.53201 * 108.77309 * 126.37143 * 10 9 7 12 12 C 1.53040 * 109.31406 * 54.63288 * 11 10 9 13 13 C 1.53043 * 109.53809 * 298.63733 * 12 11 10 14 14 H 1.08999 * 109.49640 * 301.41346 * 13 12 11 15 15 C 1.53001 * 109.49634 * 181.35084 * 13 12 11 16 16 C 1.53003 * 109.47089 * 174.99877 * 15 13 12 17 17 N 1.46499 * 109.47093 * 179.97438 * 16 15 13 18 18 C 1.36934 * 119.99984 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00032 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99994 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00116 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47077 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47045 * 119.99951 * 22 20 18 25 25 H 1.48500 * 109.47146 * 239.99813 * 22 20 18 26 26 C 1.46919 * 120.63114 * 176.70570 * 9 7 6 27 27 C 1.37991 * 118.23662 * 0.25427 * 6 4 3 28 28 N 1.34353 * 120.36729 * 359.46625 * 27 6 4 29 29 C 1.46500 * 118.80189 * 180.28369 * 28 27 6 30 30 H 1.09003 * 109.46967 * 95.89674 * 1 2 3 31 31 H 1.09004 * 109.47151 * 215.89509 * 1 2 3 32 32 H 1.09000 * 109.47752 * 335.89351 * 1 2 3 33 33 H 1.07995 * 120.33145 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.58592 * 246.15258 * 10 9 7 35 35 H 1.09000 * 109.58613 * 6.44506 * 10 9 7 36 36 H 1.08997 * 109.49566 * 174.58996 * 11 10 9 37 37 H 1.08997 * 109.49337 * 294.68120 * 11 10 9 38 38 H 1.09004 * 109.45446 * 58.65293 * 12 11 10 39 39 H 1.08996 * 109.45973 * 178.62837 * 12 11 10 40 40 H 1.09002 * 109.46843 * 294.99474 * 15 13 12 41 41 H 1.08994 * 109.47183 * 54.99798 * 15 13 12 42 42 H 1.09002 * 109.46949 * 299.99532 * 16 15 13 43 43 H 1.09006 * 109.47028 * 59.99637 * 16 15 13 44 44 H 0.97002 * 119.99715 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99888 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58832 * 353.41395 * 26 9 7 47 47 H 1.09002 * 109.59113 * 113.84665 * 26 9 7 48 48 H 1.07999 * 119.81480 * 179.72465 * 27 6 4 49 49 H 1.08997 * 109.47309 * 264.32277 * 29 28 27 50 50 H 1.08990 * 109.47153 * 24.32838 * 29 28 27 51 51 H 1.09005 * 109.46615 * 144.32535 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5794 1.1844 -0.0006 5 8 4.2051 2.2329 -0.0010 6 6 4.2724 -0.1131 -0.0005 7 6 5.7437 -0.1845 -0.0016 8 8 6.3936 0.6550 0.5915 9 7 6.3693 -1.1832 -0.6554 10 6 5.5973 -2.2447 -1.3159 11 6 6.0465 -2.3445 -2.7772 12 6 7.5627 -2.5455 -2.8281 13 6 8.2603 -1.3422 -2.1895 14 1 7.9763 -0.4334 -2.7201 15 6 9.7767 -1.5285 -2.2712 16 6 10.4739 -0.2717 -1.7465 17 7 11.9259 -0.4503 -1.8241 18 6 12.7621 0.5508 -1.4073 19 1 12.3512 1.4719 -1.0210 20 6 14.1378 0.3814 -1.4803 21 7 14.6386 -0.7417 -1.9496 22 14 15.2786 1.7473 -0.9124 23 1 14.4722 2.8974 -0.4306 24 1 16.1371 1.2482 0.1917 25 1 16.1334 2.1819 -2.0463 26 6 7.8361 -1.2280 -0.7264 27 6 3.5077 -1.2617 -0.0054 28 7 2.1664 -1.1846 0.0009 29 6 1.3881 -2.4258 0.0018 30 1 -0.3633 -0.1056 -1.0223 31 1 -0.3634 -0.8325 0.6025 32 1 -0.3634 0.9380 0.4197 33 1 1.6136 2.1083 -0.0004 34 1 5.7775 -3.1946 -0.8126 35 1 4.5350 -2.0042 -1.2736 36 1 5.5510 -3.1908 -3.2530 37 1 5.7833 -1.4262 -3.3021 38 1 7.8275 -3.4508 -2.2818 39 1 7.8817 -2.6412 -3.8660 40 1 10.0704 -2.3863 -1.6661 41 1 10.0666 -1.6988 -3.3080 42 1 10.1802 0.5861 -2.3515 43 1 10.1839 -0.1014 -0.7096 44 1 12.2949 -1.2777 -2.1707 45 1 15.6000 -0.8602 -2.0003 46 1 8.2508 -0.3157 -0.2975 47 1 8.2025 -2.0933 -0.1741 48 1 3.9900 -2.2279 -0.0100 49 1 1.1043 -2.6775 -1.0201 50 1 1.9902 -3.2319 0.4207 51 1 0.4905 -2.2913 0.6055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714214236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:20 Heat of formation + Delta-G solvation = -5.079786 kcal Electronic energy + Delta-G solvation = -30840.171815 eV Core-core repulsion = 26741.104758 eV Total energy + Delta-G solvation = -4099.067056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77489 -40.01893 -38.31118 -37.34993 -35.41751 -34.19515 -33.42560 -32.68836 -32.11166 -30.61788 -28.91626 -27.40950 -27.31143 -25.91890 -24.35500 -23.99372 -22.52785 -22.14478 -20.90732 -20.33824 -19.54193 -18.46804 -17.53644 -17.02818 -16.90859 -16.57447 -15.94884 -15.83392 -15.17995 -14.93771 -14.71412 -14.55918 -14.18359 -14.04896 -14.01199 -13.74421 -13.66232 -13.54415 -13.48664 -13.24343 -12.98332 -12.92579 -12.86523 -12.60082 -12.45973 -12.39010 -11.93396 -11.39017 -11.08577 -11.04695 -10.94470 -10.77398 -10.50238 -10.36362 -10.14655 -10.03202 -9.83967 -9.74506 -9.55823 -9.34878 -8.75257 -8.63272 -8.25082 -6.79451 -5.65802 -2.93384 0.54618 0.92933 1.88719 2.76052 2.96834 3.52451 3.55669 3.58178 3.61329 3.61628 3.90855 4.02852 4.19664 4.30885 4.43723 4.50296 4.60448 4.66451 4.68770 4.73455 4.76728 4.78578 4.91673 5.00275 5.09972 5.14253 5.15879 5.31147 5.40171 5.46618 5.59948 5.64721 5.66782 5.72769 5.84855 5.93085 5.97062 6.06654 6.11574 6.14740 6.29403 6.36213 6.36729 6.43807 6.53337 6.61872 7.00909 7.03584 7.40453 7.83968 7.94790 8.30868 8.53937 9.64867 10.23618 10.58579 11.57492 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.002163 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.007248 B =12943.213240 C =14078.564942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.268 4.268 4 C 0.408 3.592 5 O -0.483 6.483 6 C -0.290 4.290 7 C 0.575 3.425 8 O -0.508 6.508 9 N -0.612 5.612 10 C 0.080 3.920 11 C -0.134 4.134 12 C -0.114 4.114 13 C -0.097 4.097 14 H 0.074 0.926 15 C -0.117 4.117 16 C 0.149 3.851 17 N -0.734 5.734 18 C -0.233 4.233 19 H 0.071 0.929 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.118 3.882 27 C 0.151 3.849 28 N -0.474 5.474 29 C 0.048 3.952 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.153 0.847 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.022 0.978 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.101 0.899 47 H 0.068 0.932 48 H 0.184 0.816 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.642 -12.057 1.009 40.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.292 4.292 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.301 4.301 7 C 0.363 3.637 8 O -0.382 6.382 9 N -0.347 5.347 10 C -0.043 4.043 11 C -0.173 4.173 12 C -0.152 4.152 13 C -0.117 4.117 14 H 0.092 0.908 15 C -0.155 4.155 16 C 0.022 3.978 17 N -0.378 5.378 18 C -0.364 4.364 19 H 0.089 0.911 20 C -0.214 4.214 21 N -0.586 5.586 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.004 4.004 27 C 0.022 3.978 28 N -0.162 5.162 29 C -0.093 4.093 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.170 0.830 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.040 0.960 44 H 0.216 0.784 45 H 0.063 0.937 46 H 0.119 0.881 47 H 0.086 0.914 48 H 0.201 0.799 49 H 0.101 0.899 50 H 0.112 0.888 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -38.023 -11.004 1.433 39.609 hybrid contribution 0.807 0.190 0.029 0.830 sum -37.215 -10.814 1.462 38.782 Atomic orbital electron populations 1.21190 0.88026 1.05091 1.04104 1.20270 0.94865 0.85012 0.94986 1.22260 0.96178 0.97284 1.13493 1.18147 0.88334 0.87734 0.76360 1.90843 1.69975 1.33277 1.42314 1.22531 0.94467 0.95280 1.17850 1.17512 0.86035 0.80930 0.79256 1.90858 1.66302 1.38598 1.42483 1.48039 1.07412 1.25310 1.53939 1.22479 0.96789 0.90982 0.94002 1.21922 0.97308 1.02402 0.95623 1.21583 0.93829 0.98365 1.01402 1.21400 0.95964 0.98750 0.95605 0.90757 1.21715 0.92229 0.99720 1.01858 1.20732 0.85406 0.94258 0.97439 1.42379 0.99386 1.18912 1.77123 1.19336 0.87787 0.95663 1.33647 0.91083 1.24735 0.96741 0.97517 1.02366 1.69676 1.11289 1.24987 1.52652 0.86106 0.80978 0.81343 0.77810 1.20473 1.21928 1.21947 1.21716 0.77719 1.04156 0.96798 1.22822 0.82060 1.00517 0.92384 1.42602 1.05223 1.07177 1.61177 1.22544 0.97889 0.84348 1.04531 0.89297 0.90126 0.88844 0.82972 0.90992 0.88984 0.90928 0.91379 0.91674 0.91416 0.91804 0.91584 0.96424 0.96035 0.78411 0.93723 0.88096 0.91360 0.79916 0.89856 0.88845 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.13 9.35 36.00 0.34 0.21 16 2 C 0.15 0.80 6.64 -82.13 -0.55 0.26 16 3 C -0.27 -2.52 9.57 -39.47 -0.38 -2.90 16 4 C 0.41 6.02 6.94 -34.68 -0.24 5.78 16 5 O -0.48 -9.78 16.92 -9.23 -0.16 -9.94 16 6 C -0.29 -3.64 5.69 -102.71 -0.58 -4.22 16 7 C 0.57 9.20 7.36 -12.58 -0.09 9.11 16 8 O -0.51 -10.95 15.66 -8.79 -0.14 -11.09 16 9 N -0.61 -7.81 2.98 -174.34 -0.52 -8.33 16 10 C 0.08 0.61 5.00 -3.70 -0.02 0.59 16 11 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 12 C -0.11 -1.17 5.17 -26.69 -0.14 -1.30 16 13 C -0.10 -1.35 2.32 -90.72 -0.21 -1.56 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.97 4.80 -26.73 -0.13 -2.09 16 16 C 0.15 3.29 6.02 -4.04 -0.02 3.27 16 17 N -0.73 -20.00 5.60 -59.91 -0.34 -20.34 16 18 C -0.23 -7.02 9.99 -15.06 -0.15 -7.17 16 19 H 0.07 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 21 N -0.94 -29.60 13.06 55.49 0.72 -28.88 16 22 Si 0.91 23.79 29.55 -169.99 -5.02 18.77 16 23 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 26 C 0.12 1.72 5.29 -3.93 -0.02 1.70 16 27 C 0.15 0.98 7.73 -16.54 -0.13 0.86 16 28 N -0.47 -1.89 2.97 -120.19 -0.36 -2.25 16 29 C 0.05 -0.04 9.98 59.85 0.60 0.56 16 30 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.08 -0.07 6.00 -51.93 -0.31 -0.39 16 32 H 0.09 0.08 7.97 -51.93 -0.41 -0.33 16 33 H 0.15 1.23 8.01 -52.49 -0.42 0.81 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.51 3.51 -52.75 -0.19 0.32 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.49 6.70 -51.93 -0.35 0.15 16 44 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 45 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.10 1.84 5.74 -51.93 -0.30 1.54 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.18 0.63 5.23 -52.49 -0.27 0.35 16 49 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 50 H 0.09 -0.20 7.86 -51.93 -0.41 -0.61 16 51 H 0.09 -0.21 5.94 -51.93 -0.31 -0.52 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -43.52 399.96 -9.66 -53.18 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.90 Total: 1.66 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.98 Total: 1.20 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.49 Total: -59.80 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.29 Total: -21.02 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.02 Total: 18.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -43.52 -9.66 -53.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714214236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.097 kcal (2) G-P(sol) polarization free energy of solvation -43.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds