Wall clock time and date at job start Wed Apr 1 2020 04:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34871 * 119.09733 * 2 1 4 4 C 1.41663 * 119.33807 * 180.02562 * 3 2 1 5 5 O 1.22092 * 121.06812 * 179.97438 * 4 3 2 6 6 C 1.47098 * 117.86559 * 359.97438 * 4 3 2 7 7 C 1.47296 * 120.88406 * 179.97438 * 6 4 3 8 8 O 1.21612 * 119.99870 * 34.33532 * 7 6 4 9 9 N 1.34774 * 119.99893 * 214.06220 * 7 6 4 10 10 C 1.46935 * 120.62947 * 356.98273 * 9 7 6 11 11 C 1.53201 * 108.77309 * 126.37143 * 10 9 7 12 12 C 1.53040 * 109.31406 * 54.63288 * 11 10 9 13 13 C 1.53043 * 109.53809 * 298.63733 * 12 11 10 14 14 H 1.08999 * 109.49640 * 301.41346 * 13 12 11 15 15 C 1.53001 * 109.49634 * 181.35084 * 13 12 11 16 16 C 1.53003 * 109.47089 * 174.99877 * 15 13 12 17 17 N 1.46499 * 109.47093 * 179.97438 * 16 15 13 18 18 C 1.36934 * 119.99984 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00032 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99994 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00116 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47077 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47045 * 119.99951 * 22 20 18 25 25 H 1.48500 * 109.47146 * 239.99813 * 22 20 18 26 26 C 1.46919 * 120.63114 * 176.70570 * 9 7 6 27 27 C 1.37991 * 118.23662 * 0.25427 * 6 4 3 28 28 N 1.34353 * 120.36729 * 359.46625 * 27 6 4 29 29 C 1.46500 * 118.80189 * 180.28369 * 28 27 6 30 30 H 1.09003 * 109.46967 * 95.89674 * 1 2 3 31 31 H 1.09004 * 109.47151 * 215.89509 * 1 2 3 32 32 H 1.09000 * 109.47752 * 335.89351 * 1 2 3 33 33 H 1.07995 * 120.33145 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.58592 * 246.15258 * 10 9 7 35 35 H 1.09000 * 109.58613 * 6.44506 * 10 9 7 36 36 H 1.08997 * 109.49566 * 174.58996 * 11 10 9 37 37 H 1.08997 * 109.49337 * 294.68120 * 11 10 9 38 38 H 1.09004 * 109.45446 * 58.65293 * 12 11 10 39 39 H 1.08996 * 109.45973 * 178.62837 * 12 11 10 40 40 H 1.09002 * 109.46843 * 294.99474 * 15 13 12 41 41 H 1.08994 * 109.47183 * 54.99798 * 15 13 12 42 42 H 1.09002 * 109.46949 * 299.99532 * 16 15 13 43 43 H 1.09006 * 109.47028 * 59.99637 * 16 15 13 44 44 H 0.97002 * 119.99715 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99888 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58832 * 353.41395 * 26 9 7 47 47 H 1.09002 * 109.59113 * 113.84665 * 26 9 7 48 48 H 1.07999 * 119.81480 * 179.72465 * 27 6 4 49 49 H 1.08997 * 109.47309 * 264.32277 * 29 28 27 50 50 H 1.08990 * 109.47153 * 24.32838 * 29 28 27 51 51 H 1.09005 * 109.46615 * 144.32535 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5794 1.1844 -0.0006 5 8 4.2051 2.2329 -0.0010 6 6 4.2724 -0.1131 -0.0005 7 6 5.7437 -0.1845 -0.0016 8 8 6.3936 0.6550 0.5915 9 7 6.3693 -1.1832 -0.6554 10 6 5.5973 -2.2447 -1.3159 11 6 6.0465 -2.3445 -2.7772 12 6 7.5627 -2.5455 -2.8281 13 6 8.2603 -1.3422 -2.1895 14 1 7.9763 -0.4334 -2.7201 15 6 9.7767 -1.5285 -2.2712 16 6 10.4739 -0.2717 -1.7465 17 7 11.9259 -0.4503 -1.8241 18 6 12.7621 0.5508 -1.4073 19 1 12.3512 1.4719 -1.0210 20 6 14.1378 0.3814 -1.4803 21 7 14.6386 -0.7417 -1.9496 22 14 15.2786 1.7473 -0.9124 23 1 14.4722 2.8974 -0.4306 24 1 16.1371 1.2482 0.1917 25 1 16.1334 2.1819 -2.0463 26 6 7.8361 -1.2280 -0.7264 27 6 3.5077 -1.2617 -0.0054 28 7 2.1664 -1.1846 0.0009 29 6 1.3881 -2.4258 0.0018 30 1 -0.3633 -0.1056 -1.0223 31 1 -0.3634 -0.8325 0.6025 32 1 -0.3634 0.9380 0.4197 33 1 1.6136 2.1083 -0.0004 34 1 5.7775 -3.1946 -0.8126 35 1 4.5350 -2.0042 -1.2736 36 1 5.5510 -3.1908 -3.2530 37 1 5.7833 -1.4262 -3.3021 38 1 7.8275 -3.4508 -2.2818 39 1 7.8817 -2.6412 -3.8660 40 1 10.0704 -2.3863 -1.6661 41 1 10.0666 -1.6988 -3.3080 42 1 10.1802 0.5861 -2.3515 43 1 10.1839 -0.1014 -0.7096 44 1 12.2949 -1.2777 -2.1707 45 1 15.6000 -0.8602 -2.0003 46 1 8.2508 -0.3157 -0.2975 47 1 8.2025 -2.0933 -0.1741 48 1 3.9900 -2.2279 -0.0100 49 1 1.1043 -2.6775 -1.0201 50 1 1.9902 -3.2319 0.4207 51 1 0.4905 -2.2913 0.6055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714214236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:19 Heat of formation + Delta-G solvation = -37.774793 kcal Electronic energy + Delta-G solvation = -30841.589576 eV Core-core repulsion = 26741.104758 eV Total energy + Delta-G solvation = -4100.484818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.45977 -40.97243 -39.29867 -38.54498 -37.03499 -35.45193 -34.26208 -33.69949 -33.20803 -32.30393 -29.69773 -28.65350 -27.71715 -26.76644 -25.96482 -24.93081 -23.99178 -22.93098 -22.24520 -21.45449 -20.44386 -19.30510 -19.12171 -18.22299 -17.66373 -17.27077 -16.88685 -16.74594 -16.61922 -16.12243 -15.81123 -15.65036 -15.49440 -15.27344 -14.99656 -14.90092 -14.76479 -14.41727 -14.23345 -14.10232 -13.86339 -13.82827 -13.79244 -13.45642 -13.24723 -12.99893 -12.86280 -12.69878 -12.59011 -12.51806 -12.28627 -12.13975 -11.96314 -11.89810 -11.74253 -11.53241 -11.22142 -11.14404 -10.98142 -10.47197 -10.31749 -9.68911 -9.06934 -9.06206 -8.01793 -5.31110 -0.20415 0.28305 1.41651 1.43040 1.44835 1.54325 1.67371 2.00401 2.50741 2.66801 3.20203 3.30437 3.41430 3.56069 3.63017 3.75075 3.80702 3.84207 3.98130 4.08381 4.10390 4.24781 4.30557 4.40261 4.41932 4.46069 4.49365 4.51002 4.63249 4.69243 4.71719 4.74921 4.81291 4.83090 4.85247 4.89782 4.90346 5.03358 5.10647 5.17910 5.21779 5.28657 5.30110 5.37066 5.42350 5.50185 5.54016 5.70932 5.78233 6.21768 6.40592 7.04584 7.21341 7.27464 8.01023 8.28496 9.21626 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.002163 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.007248 B =12943.213240 C =14078.564942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.192 3.808 3 C -0.308 4.308 4 C 0.380 3.620 5 O -0.582 6.582 6 C -0.349 4.349 7 C 0.565 3.435 8 O -0.591 6.591 9 N -0.606 5.606 10 C 0.072 3.928 11 C -0.129 4.129 12 C -0.109 4.109 13 C -0.088 4.088 14 H 0.048 0.952 15 C -0.101 4.101 16 C 0.148 3.852 17 N -0.743 5.743 18 C -0.254 4.254 19 H 0.064 0.936 20 C -0.072 4.072 21 N -0.965 5.965 22 Si 0.975 3.025 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.119 3.881 27 C 0.204 3.796 28 N -0.455 5.455 29 C 0.029 3.971 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.002 0.998 43 H 0.009 0.991 44 H 0.377 0.623 45 H 0.254 0.746 46 H 0.048 0.952 47 H 0.085 0.915 48 H 0.230 0.770 49 H 0.112 0.888 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -43.120 -17.309 0.376 46.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 C -0.331 4.331 4 C 0.274 3.726 5 O -0.473 6.473 6 C -0.359 4.359 7 C 0.356 3.644 8 O -0.471 6.471 9 N -0.339 5.339 10 C -0.048 4.048 11 C -0.167 4.167 12 C -0.147 4.147 13 C -0.108 4.108 14 H 0.067 0.933 15 C -0.139 4.139 16 C 0.022 3.978 17 N -0.386 5.386 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.265 4.265 21 N -0.615 5.615 22 Si 0.803 3.197 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.004 4.004 27 C 0.070 3.930 28 N -0.138 5.138 29 C -0.109 4.109 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.169 0.831 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.020 0.980 43 H 0.027 0.973 44 H 0.210 0.790 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.246 0.754 49 H 0.130 0.870 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -42.617 -16.363 0.764 45.657 hybrid contribution 1.965 1.610 0.206 2.549 sum -40.652 -14.753 0.970 43.257 Atomic orbital electron populations 1.21421 0.83769 1.06809 1.06262 1.20834 0.97080 0.83921 0.89745 1.22083 0.93715 0.99687 1.17655 1.19029 0.90610 0.87706 0.75233 1.90776 1.71940 1.35994 1.48540 1.22074 0.92902 0.96622 1.24352 1.18192 0.87628 0.80277 0.78339 1.90794 1.68268 1.41765 1.46293 1.48117 1.06741 1.25831 1.53213 1.22979 0.97237 0.90722 0.93868 1.21937 0.95632 1.03375 0.95783 1.21576 0.95195 0.96499 1.01398 1.21290 0.94153 1.00118 0.95210 0.93331 1.21576 0.93790 0.96874 1.01687 1.20847 0.83480 0.96760 0.96738 1.42531 1.01062 1.18120 1.76931 1.19623 0.88818 0.96187 1.33922 0.91833 1.25577 0.98080 1.00093 1.02707 1.69807 1.11612 1.26629 1.53452 0.85057 0.78671 0.78504 0.77430 1.19971 1.21230 1.21207 1.21507 0.79484 1.02229 0.97142 1.23221 0.82868 0.99874 0.86997 1.43304 1.04855 1.09049 1.56568 1.23203 0.98543 0.81880 1.07275 0.86836 0.86585 0.88723 0.83102 0.86758 0.86671 0.86308 0.93388 0.89603 0.90881 0.90816 0.91165 0.98039 0.97272 0.79023 0.93673 0.93357 0.89651 0.75416 0.86983 0.86136 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.43 9.35 71.23 0.67 1.09 16 2 C 0.19 1.36 6.64 41.21 0.27 1.63 16 3 C -0.31 -6.15 9.57 22.34 0.21 -5.93 16 4 C 0.38 12.74 6.94 25.44 0.18 12.92 16 5 O -0.58 -27.93 16.92 7.83 0.13 -27.80 16 6 C -0.35 -9.22 5.69 -18.63 -0.11 -9.32 16 7 C 0.56 19.93 7.36 86.63 0.64 20.56 16 8 O -0.59 -29.42 15.66 9.38 0.15 -29.27 16 9 N -0.61 -15.76 2.98 -823.74 -2.45 -18.21 16 10 C 0.07 0.79 5.00 86.36 0.43 1.23 16 11 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 12 C -0.11 -1.92 5.17 30.62 0.16 -1.76 16 13 C -0.09 -2.51 2.32 -10.86 -0.03 -2.53 16 14 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.10 -3.50 4.80 30.60 0.15 -3.36 16 16 C 0.15 7.05 6.02 86.38 0.52 7.57 16 17 N -0.74 -42.42 5.60 -343.44 -1.92 -44.34 16 18 C -0.25 -15.90 9.99 84.03 0.84 -15.06 16 19 H 0.06 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -4.47 5.50 84.86 0.47 -4.01 16 21 N -0.96 -61.96 13.06 21.65 0.28 -61.67 16 22 Si 0.98 50.01 29.55 68.60 2.03 52.04 16 23 H -0.27 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 26 C 0.12 3.70 5.29 86.22 0.46 4.16 16 27 C 0.20 1.91 7.73 84.25 0.65 2.56 16 28 N -0.45 -1.20 2.97 -534.18 -1.59 -2.78 16 29 C 0.03 -0.29 9.98 127.77 1.27 0.99 16 30 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.12 -1.10 6.00 -2.38 -0.01 -1.12 16 32 H 0.09 -0.20 7.97 -2.39 -0.02 -0.22 16 33 H 0.15 2.83 8.01 -2.91 -0.02 2.80 16 34 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.12 0.65 3.51 -3.16 -0.01 0.64 16 36 H 0.12 0.45 8.14 -2.39 -0.02 0.44 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.01 0.47 6.70 -2.38 -0.02 0.45 16 44 H 0.38 21.92 7.67 -92.71 -0.71 21.21 16 45 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.05 2.02 5.74 -2.39 -0.01 2.00 16 47 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.23 0.06 5.23 -2.91 -0.02 0.05 16 49 H 0.11 -1.50 8.14 -2.39 -0.02 -1.51 16 50 H 0.12 -1.64 7.86 -2.39 -0.02 -1.66 16 51 H 0.12 -1.59 5.94 -2.38 -0.01 -1.60 16 Total: -1.00 -114.80 399.96 3.83 -110.96 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.24 Total: 11.68 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.97 Total: 9.40 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -5.68 Total: -127.01 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: 0.28 Total: -57.07 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.03 Total: 52.04 kcal Total: -114.80 3.83 -110.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714214236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.190 kcal (2) G-P(sol) polarization free energy of solvation -114.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds