Wall clock time and date at job start Wed Apr 1 2020 04:33:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.41375 * 126.79837 * 2 1
4 4 C 1.35456 * 103.98555 * 180.02562 * 3 2 1
5 5 C 1.50699 * 126.77543 * 179.97438 * 4 3 2
6 6 C 1.50693 * 115.55444 * 65.35534 * 5 4 3
7 7 O 1.21291 * 119.99797 * 239.80425 * 6 5 4
8 8 N 1.34778 * 120.00503 * 59.80228 * 6 5 4
9 9 C 1.46499 * 120.00329 * 184.55828 * 8 6 5
10 10 C 1.52994 * 109.47061 * 180.02562 * 9 8 6
11 11 C 1.52998 * 109.47292 * 180.02562 * 10 9 8
12 12 C 1.52997 * 109.47485 * 186.20750 * 11 10 9
13 13 H 1.09002 * 109.87220 * 51.37978 * 12 11 10
14 14 C 1.54320 * 110.01501 * 172.47848 * 12 11 10
15 15 C 1.55152 * 102.94323 * 141.68131 * 14 12 11
16 16 C 1.54911 * 101.58514 * 324.50208 * 15 14 12
17 17 N 1.47018 * 109.88215 * 290.37039 * 12 11 10
18 18 C 1.36939 * 125.65407 * 61.44668 * 17 12 11
19 19 H 1.07998 * 119.99633 * 303.75451 * 18 17 12
20 20 C 1.38803 * 119.99984 * 123.74870 * 18 17 12
21 21 N 1.31617 * 120.00147 * 173.19880 * 20 18 17
22 22 Si 1.86807 * 120.00160 * 353.19723 * 20 18 17
23 23 H 1.48494 * 109.46832 * 89.56233 * 22 20 18
24 24 H 1.48503 * 109.46799 * 209.56053 * 22 20 18
25 25 H 1.48499 * 109.47074 * 329.56383 * 22 20 18
26 26 C 1.53011 * 117.49423 * 211.02363 * 5 4 3
27 27 C 1.53004 * 117.49389 * 279.67794 * 5 4 3
28 28 O 1.34043 * 106.44336 * 0.23525 * 4 3 2
29 29 N 1.20922 * 111.56431 * 359.57195 * 28 4 3
30 30 H 1.08995 * 109.47007 * 90.00181 * 1 2 3
31 31 H 1.09003 * 109.46530 * 210.00077 * 1 2 3
32 32 H 1.08995 * 109.46955 * 329.99823 * 1 2 3
33 33 H 1.07996 * 128.01253 * 0.03505 * 3 2 1
34 34 H 0.96998 * 119.99269 * 4.55466 * 8 6 5
35 35 H 1.09002 * 109.47095 * 59.99900 * 9 8 6
36 36 H 1.09002 * 109.46867 * 299.99583 * 9 8 6
37 37 H 1.08995 * 109.47390 * 59.99528 * 10 9 8
38 38 H 1.09008 * 109.46881 * 299.99812 * 10 9 8
39 39 H 1.08997 * 109.47821 * 66.20276 * 11 10 9
40 40 H 1.09004 * 109.46755 * 306.20053 * 11 10 9
41 41 H 1.09011 * 110.71876 * 23.32278 * 14 12 11
42 42 H 1.08996 * 110.72683 * 260.04956 * 14 12 11
43 43 H 1.09000 * 111.00778 * 206.42686 * 15 14 12
44 44 H 1.09002 * 111.00746 * 82.57759 * 15 14 12
45 45 H 1.08998 * 110.37177 * 155.84606 * 16 15 14
46 46 H 1.09006 * 110.36388 * 278.06396 * 16 15 14
47 47 H 0.97003 * 120.00596 * 179.97438 * 21 20 18
48 48 H 1.08994 * 117.49445 * 215.00336 * 26 5 4
49 49 H 1.09002 * 117.49529 * 0.02562 * 26 5 4
50 50 H 1.08992 * 117.50115 * 359.97438 * 27 5 4
51 51 H 1.09006 * 117.49098 * 144.98078 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1321 0.0000
4 6 3.6025 0.6069 -0.0006
5 6 4.9021 1.3697 -0.0014
6 6 5.1764 2.1879 1.2340
7 8 5.3279 3.3880 1.1453
8 7 5.2533 1.5861 2.4376
9 6 5.4202 2.3914 3.6499
10 6 5.4792 1.4702 4.8700
11 6 5.6528 2.3113 6.1362
12 6 5.8667 1.3874 7.3368
13 1 6.6641 0.6766 7.1200
14 6 6.2300 2.2190 8.5850
15 6 5.4773 1.4824 9.7244
16 6 4.1852 1.0279 9.0007
17 7 4.6224 0.6655 7.6402
18 6 3.9760 -0.1997 6.7982
19 1 3.6728 0.1290 5.8152
20 6 3.7106 -1.4989 7.2082
21 7 2.9741 -2.2889 6.4561
22 14 4.3990 -2.1264 8.8275
23 1 3.4347 -1.8393 9.9197
24 1 4.6215 -3.5918 8.7361
25 1 5.6880 -1.4469 9.1139
26 6 6.0997 0.7241 -0.7015
27 6 5.3951 1.9239 -1.3397
28 8 3.4538 -0.7253 -0.0062
29 7 2.2868 -1.0422 -0.0005
30 1 -0.3633 0.0000 -1.0276
31 1 -0.3632 -0.8900 0.5139
32 1 -0.3633 0.8899 0.5138
33 1 2.0709 2.1743 0.0005
34 1 5.1982 0.6198 2.5009
35 1 4.5773 3.0752 3.7508
36 1 6.3458 2.9631 3.5817
37 1 6.3222 0.7868 4.7689
38 1 4.5538 0.8981 4.9383
39 1 4.7596 2.9149 6.2969
40 1 6.5176 2.9650 6.0223
41 1 5.8703 3.2431 8.4843
42 1 7.3057 2.2025 8.7599
43 1 5.2471 2.1628 10.5443
44 1 6.0486 0.6247 10.0794
45 1 3.7531 0.1627 9.5034
46 1 3.4638 1.8442 8.9643
47 1 2.7889 -3.1970 6.7424
48 1 7.0859 0.8912 -0.2684
49 1 5.9473 -0.2521 -1.1617
50 1 4.7796 1.7363 -2.2194
51 1 5.9175 2.8805 -1.3264
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714525293.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:33:17
Heat of formation + Delta-G solvation = 65.378964 kcal
Electronic energy + Delta-G solvation = -31028.691582 eV
Core-core repulsion = 26932.679847 eV
Total energy + Delta-G solvation = -4096.011735 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-44.97055 -40.12708 -38.11364 -36.99783 -35.29789 -34.81055 -32.62442 -32.52803
-31.52299 -29.92336 -28.74285 -28.60124 -25.64665 -24.51224 -23.62801 -23.37227
-22.51089 -21.35647 -21.16847 -20.31290 -19.46570 -19.17115 -18.04054 -17.55501
-16.99280 -16.55942 -16.14967 -15.82560 -15.56463 -14.99768 -14.61063 -14.39247
-14.06312 -13.81150 -13.43452 -13.37044 -13.32006 -13.07488 -12.86209 -12.59198
-12.52436 -12.42265 -12.05227 -11.99411 -11.90441 -11.54971 -11.33739 -11.17984
-11.16174 -10.94110 -10.85007 -10.76439 -10.59529 -10.29215 -10.17200 -10.02983
-9.96930 -9.88863 -9.83801 -9.39983 -9.29526 -8.92897 -8.53208 -6.43523
-5.97637 -3.73478 1.33596 2.17519 2.24713 2.94660 3.21458 3.30624
3.40125 3.41959 3.50040 4.13738 4.17696 4.47778 4.48728 4.48995
4.68833 4.93437 5.04867 5.15167 5.16011 5.25226 5.30162 5.36694
5.38940 5.41955 5.47865 5.52495 5.54645 5.57846 5.64533 5.68264
5.71784 5.78861 5.82571 6.01631 6.04802 6.05430 6.15748 6.18868
6.32899 6.35061 6.43745 6.50768 6.62523 6.71074 6.78267 6.91085
7.04078 7.10704 7.55242 8.09184 8.17524 8.23514 8.48185 8.85159
9.60433 10.33486 11.09092
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010640 B = 0.003068 C = 0.002598
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2631.028234 B = 9123.283152 C =10775.457543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.017 3.983
3 C -0.210 4.210
4 C 0.002 3.998
5 C -0.094 4.094
6 C 0.557 3.443
7 O -0.536 6.536
8 N -0.712 5.712
9 C 0.120 3.880
10 C -0.142 4.142
11 C -0.111 4.111
12 C 0.154 3.846
13 H 0.039 0.961
14 C -0.126 4.126
15 C -0.139 4.139
16 C 0.117 3.883
17 N -0.602 5.602
18 C -0.258 4.258
19 H 0.083 0.917
20 C 0.048 3.952
21 N -0.901 5.901
22 Si 0.892 3.108
23 H -0.285 1.285
24 H -0.302 1.302
25 H -0.264 1.264
26 C -0.144 4.144
27 C -0.122 4.122
28 O 0.108 5.892
29 N -0.356 5.356
30 H 0.078 0.922
31 H 0.079 0.921
32 H 0.082 0.918
33 H 0.171 0.829
34 H 0.407 0.593
35 H 0.063 0.937
36 H 0.061 0.939
37 H 0.061 0.939
38 H 0.109 0.891
39 H 0.058 0.942
40 H 0.047 0.953
41 H 0.064 0.936
42 H 0.060 0.940
43 H 0.061 0.939
44 H 0.062 0.938
45 H 0.040 0.960
46 H 0.026 0.974
47 H 0.265 0.735
48 H 0.111 0.889
49 H 0.114 0.886
50 H 0.107 0.893
51 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.716 8.111 -12.233 15.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.141 4.141
3 C -0.231 4.231
4 C -0.062 4.062
5 C -0.098 4.098
6 C 0.341 3.659
7 O -0.413 6.413
8 N -0.362 5.362
9 C -0.003 4.003
10 C -0.179 4.179
11 C -0.151 4.151
12 C 0.048 3.952
13 H 0.057 0.943
14 C -0.164 4.164
15 C -0.177 4.177
16 C -0.007 4.007
17 N -0.329 5.329
18 C -0.386 4.386
19 H 0.100 0.900
20 C -0.155 4.155
21 N -0.541 5.541
22 Si 0.722 3.278
23 H -0.212 1.212
24 H -0.230 1.230
25 H -0.189 1.189
26 C -0.181 4.181
27 C -0.160 4.160
28 O 0.040 5.960
29 N -0.059 5.059
30 H 0.097 0.903
31 H 0.098 0.902
32 H 0.101 0.899
33 H 0.188 0.812
34 H 0.241 0.759
35 H 0.081 0.919
36 H 0.079 0.921
37 H 0.079 0.921
38 H 0.127 0.873
39 H 0.077 0.923
40 H 0.065 0.935
41 H 0.082 0.918
42 H 0.079 0.921
43 H 0.080 0.920
44 H 0.081 0.919
45 H 0.058 0.942
46 H 0.044 0.956
47 H 0.075 0.925
48 H 0.129 0.871
49 H 0.132 0.868
50 H 0.126 0.874
51 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 3.444 7.412 -12.336 14.798
hybrid contribution 0.015 -0.175 1.111 1.125
sum 3.459 7.237 -11.225 13.796
Atomic orbital electron populations
1.20177 0.85805 1.04245 1.03118 1.23579 0.99171 0.88545 1.02845
1.22363 0.90891 1.01233 1.08604 1.22799 0.95343 0.83785 1.04272
1.19378 0.91725 1.03112 0.95621 1.18959 0.76753 0.87071 0.83155
1.90702 1.50365 1.14168 1.86041 1.46041 1.72629 1.11479 1.06070
1.21576 1.01159 0.94214 0.83310 1.22195 1.05796 0.98089 0.91848
1.21827 1.00232 0.97799 0.95219 1.21124 0.90230 0.92141 0.91675
0.94276 1.22573 0.99107 0.98812 0.95897 1.22787 0.98296 0.99538
0.97085 1.21884 0.93915 0.97181 0.87760 1.44544 1.23235 1.51468
1.13606 1.18519 1.32760 0.89036 0.98310 0.90032 1.25950 0.96219
0.95916 0.97414 1.69775 1.38280 1.07828 1.38200 0.86591 0.80484
0.76667 0.84060 1.21247 1.22980 1.18868 1.23207 0.95027 0.98768
1.01130 1.23154 1.01399 0.99285 0.92152 1.84845 1.21789 1.22058
1.67283 1.73882 0.89109 1.23777 1.19113 0.90298 0.90223 0.89900
0.81150 0.75863 0.91883 0.92093 0.92052 0.87304 0.92306 0.93472
0.91765 0.92115 0.92017 0.91925 0.94207 0.95598 0.92538 0.87075
0.86815 0.87419 0.86418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.77 10.47 36.01 0.38 -0.39 16
2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16
3 C -0.21 -2.67 11.06 -39.38 -0.44 -3.10 16
4 C 0.00 0.02 6.47 -35.30 -0.23 -0.21 16
5 C -0.09 -1.08 2.39 -156.81 -0.37 -1.46 16
6 C 0.56 7.96 7.10 -10.99 -0.08 7.88 16
7 O -0.54 -9.07 16.57 5.55 0.09 -8.98 16
8 N -0.71 -10.29 5.55 -60.30 -0.33 -10.62 16
9 C 0.12 1.82 5.68 -4.05 -0.02 1.80 16
10 C -0.14 -2.41 4.83 -26.73 -0.13 -2.54 16
11 C -0.11 -1.86 4.71 -26.73 -0.13 -1.98 16
12 C 0.15 2.94 3.21 -66.96 -0.21 2.73 16
13 H 0.04 0.80 8.12 -51.93 -0.42 0.37 16
14 C -0.13 -2.01 6.48 -24.90 -0.16 -2.17 16
15 C -0.14 -2.39 7.08 -24.58 -0.17 -2.56 16
16 C 0.12 2.45 6.24 -2.52 -0.02 2.44 16
17 N -0.60 -13.76 2.31 -162.57 -0.38 -14.13 16
18 C -0.26 -6.83 9.21 -15.06 -0.14 -6.97 16
19 H 0.08 2.29 5.30 -52.49 -0.28 2.01 16
20 C 0.05 1.33 5.50 -17.43 -0.10 1.24 16
21 N -0.90 -26.75 13.97 55.49 0.78 -25.98 16
22 Si 0.89 22.18 25.36 -169.99 -4.31 17.87 16
23 H -0.29 -7.02 6.88 56.52 0.39 -6.63 16
24 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16
25 H -0.26 -6.39 6.78 56.52 0.38 -6.01 16
26 C -0.14 -1.26 9.94 -26.69 -0.27 -1.52 16
27 C -0.12 -1.09 9.75 -26.69 -0.26 -1.35 16
28 O 0.11 1.58 11.20 17.17 0.19 1.77 16
29 N -0.36 -5.55 12.07 33.42 0.40 -5.14 16
30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16
34 H 0.41 5.73 8.48 -40.82 -0.35 5.38 16
35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
37 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16
38 H 0.11 2.25 4.49 -51.92 -0.23 2.02 16
39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
41 H 0.06 0.94 7.86 -51.92 -0.41 0.53 16
42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
44 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16
45 H 0.04 0.90 4.87 -51.93 -0.25 0.65 16
46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
48 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16
49 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16
50 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16
51 H 0.12 1.06 7.90 -51.93 -0.41 0.65 16
LS Contribution 410.43 15.07 6.19 6.19
Total: -1.00 -32.13 410.43 -8.58 -40.71
By element:
Atomic # 1 Polarization: 15.14 SS G_CDS: -8.26 Total: 6.88 kcal
Atomic # 6 Polarization: -5.62 SS G_CDS: -2.95 Total: -8.56 kcal
Atomic # 7 Polarization: -56.34 SS G_CDS: 0.47 Total: -55.88 kcal
Atomic # 8 Polarization: -7.49 SS G_CDS: 0.28 Total: -7.21 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -4.31 Total: 17.87 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -32.13 -8.58 -40.71 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714525293.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.092 kcal
(2) G-P(sol) polarization free energy of solvation -32.131 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.379 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds