Wall clock time and date at job start Wed Apr 1 2020 04:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.79837 * 2 1 4 4 C 1.35456 * 103.98555 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77543 * 179.97438 * 4 3 2 6 6 C 1.50693 * 115.55444 * 65.35534 * 5 4 3 7 7 O 1.21291 * 119.99797 * 239.80425 * 6 5 4 8 8 N 1.34778 * 120.00503 * 59.80228 * 6 5 4 9 9 C 1.46499 * 120.00329 * 184.55828 * 8 6 5 10 10 C 1.52994 * 109.47061 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47292 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47485 * 186.20750 * 11 10 9 13 13 H 1.09002 * 109.87220 * 51.37978 * 12 11 10 14 14 C 1.54320 * 110.01501 * 172.47848 * 12 11 10 15 15 C 1.55152 * 102.94323 * 141.68131 * 14 12 11 16 16 C 1.54911 * 101.58514 * 324.50208 * 15 14 12 17 17 N 1.47018 * 109.88215 * 290.37039 * 12 11 10 18 18 C 1.36939 * 125.65407 * 61.44668 * 17 12 11 19 19 H 1.07998 * 119.99633 * 303.75451 * 18 17 12 20 20 C 1.38803 * 119.99984 * 123.74870 * 18 17 12 21 21 N 1.31617 * 120.00147 * 173.19880 * 20 18 17 22 22 Si 1.86807 * 120.00160 * 353.19723 * 20 18 17 23 23 H 1.48494 * 109.46832 * 89.56233 * 22 20 18 24 24 H 1.48503 * 109.46799 * 209.56053 * 22 20 18 25 25 H 1.48499 * 109.47074 * 329.56383 * 22 20 18 26 26 C 1.53011 * 117.49423 * 211.02363 * 5 4 3 27 27 C 1.53004 * 117.49389 * 279.67794 * 5 4 3 28 28 O 1.34043 * 106.44336 * 0.23525 * 4 3 2 29 29 N 1.20922 * 111.56431 * 359.57195 * 28 4 3 30 30 H 1.08995 * 109.47007 * 90.00181 * 1 2 3 31 31 H 1.09003 * 109.46530 * 210.00077 * 1 2 3 32 32 H 1.08995 * 109.46955 * 329.99823 * 1 2 3 33 33 H 1.07996 * 128.01253 * 0.03505 * 3 2 1 34 34 H 0.96998 * 119.99269 * 4.55466 * 8 6 5 35 35 H 1.09002 * 109.47095 * 59.99900 * 9 8 6 36 36 H 1.09002 * 109.46867 * 299.99583 * 9 8 6 37 37 H 1.08995 * 109.47390 * 59.99528 * 10 9 8 38 38 H 1.09008 * 109.46881 * 299.99812 * 10 9 8 39 39 H 1.08997 * 109.47821 * 66.20276 * 11 10 9 40 40 H 1.09004 * 109.46755 * 306.20053 * 11 10 9 41 41 H 1.09011 * 110.71876 * 23.32278 * 14 12 11 42 42 H 1.08996 * 110.72683 * 260.04956 * 14 12 11 43 43 H 1.09000 * 111.00778 * 206.42686 * 15 14 12 44 44 H 1.09002 * 111.00746 * 82.57759 * 15 14 12 45 45 H 1.08998 * 110.37177 * 155.84606 * 16 15 14 46 46 H 1.09006 * 110.36388 * 278.06396 * 16 15 14 47 47 H 0.97003 * 120.00596 * 179.97438 * 21 20 18 48 48 H 1.08994 * 117.49445 * 215.00336 * 26 5 4 49 49 H 1.09002 * 117.49529 * 0.02562 * 26 5 4 50 50 H 1.08992 * 117.50115 * 359.97438 * 27 5 4 51 51 H 1.09006 * 117.49098 * 144.98078 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 6 5.1764 2.1879 1.2340 7 8 5.3279 3.3880 1.1453 8 7 5.2533 1.5861 2.4376 9 6 5.4202 2.3914 3.6499 10 6 5.4792 1.4702 4.8700 11 6 5.6528 2.3113 6.1362 12 6 5.8667 1.3874 7.3368 13 1 6.6641 0.6766 7.1200 14 6 6.2300 2.2190 8.5850 15 6 5.4773 1.4824 9.7244 16 6 4.1852 1.0279 9.0007 17 7 4.6224 0.6655 7.6402 18 6 3.9760 -0.1997 6.7982 19 1 3.6728 0.1290 5.8152 20 6 3.7106 -1.4989 7.2082 21 7 2.9741 -2.2889 6.4561 22 14 4.3990 -2.1264 8.8275 23 1 3.4347 -1.8393 9.9197 24 1 4.6215 -3.5918 8.7361 25 1 5.6880 -1.4469 9.1139 26 6 6.0997 0.7241 -0.7015 27 6 5.3951 1.9239 -1.3397 28 8 3.4538 -0.7253 -0.0062 29 7 2.2868 -1.0422 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5138 33 1 2.0709 2.1743 0.0005 34 1 5.1982 0.6198 2.5009 35 1 4.5773 3.0752 3.7508 36 1 6.3458 2.9631 3.5817 37 1 6.3222 0.7868 4.7689 38 1 4.5538 0.8981 4.9383 39 1 4.7596 2.9149 6.2969 40 1 6.5176 2.9650 6.0223 41 1 5.8703 3.2431 8.4843 42 1 7.3057 2.2025 8.7599 43 1 5.2471 2.1628 10.5443 44 1 6.0486 0.6247 10.0794 45 1 3.7531 0.1627 9.5034 46 1 3.4638 1.8442 8.9643 47 1 2.7889 -3.1970 6.7424 48 1 7.0859 0.8912 -0.2684 49 1 5.9473 -0.2521 -1.1617 50 1 4.7796 1.7363 -2.2194 51 1 5.9175 2.8805 -1.3264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714525293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:17 Heat of formation + Delta-G solvation = 65.378964 kcal Electronic energy + Delta-G solvation = -31028.691582 eV Core-core repulsion = 26932.679847 eV Total energy + Delta-G solvation = -4096.011735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.97055 -40.12708 -38.11364 -36.99783 -35.29789 -34.81055 -32.62442 -32.52803 -31.52299 -29.92336 -28.74285 -28.60124 -25.64665 -24.51224 -23.62801 -23.37227 -22.51089 -21.35647 -21.16847 -20.31290 -19.46570 -19.17115 -18.04054 -17.55501 -16.99280 -16.55942 -16.14967 -15.82560 -15.56463 -14.99768 -14.61063 -14.39247 -14.06312 -13.81150 -13.43452 -13.37044 -13.32006 -13.07488 -12.86209 -12.59198 -12.52436 -12.42265 -12.05227 -11.99411 -11.90441 -11.54971 -11.33739 -11.17984 -11.16174 -10.94110 -10.85007 -10.76439 -10.59529 -10.29215 -10.17200 -10.02983 -9.96930 -9.88863 -9.83801 -9.39983 -9.29526 -8.92897 -8.53208 -6.43523 -5.97637 -3.73478 1.33596 2.17519 2.24713 2.94660 3.21458 3.30624 3.40125 3.41959 3.50040 4.13738 4.17696 4.47778 4.48728 4.48995 4.68833 4.93437 5.04867 5.15167 5.16011 5.25226 5.30162 5.36694 5.38940 5.41955 5.47865 5.52495 5.54645 5.57846 5.64533 5.68264 5.71784 5.78861 5.82571 6.01631 6.04802 6.05430 6.15748 6.18868 6.32899 6.35061 6.43745 6.50768 6.62523 6.71074 6.78267 6.91085 7.04078 7.10704 7.55242 8.09184 8.17524 8.23514 8.48185 8.85159 9.60433 10.33486 11.09092 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.003068 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.028234 B = 9123.283152 C =10775.457543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.210 4.210 4 C 0.002 3.998 5 C -0.094 4.094 6 C 0.557 3.443 7 O -0.536 6.536 8 N -0.712 5.712 9 C 0.120 3.880 10 C -0.142 4.142 11 C -0.111 4.111 12 C 0.154 3.846 13 H 0.039 0.961 14 C -0.126 4.126 15 C -0.139 4.139 16 C 0.117 3.883 17 N -0.602 5.602 18 C -0.258 4.258 19 H 0.083 0.917 20 C 0.048 3.952 21 N -0.901 5.901 22 Si 0.892 3.108 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.264 1.264 26 C -0.144 4.144 27 C -0.122 4.122 28 O 0.108 5.892 29 N -0.356 5.356 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.171 0.829 34 H 0.407 0.593 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.026 0.974 47 H 0.265 0.735 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.107 0.893 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 8.111 -12.233 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 C -0.231 4.231 4 C -0.062 4.062 5 C -0.098 4.098 6 C 0.341 3.659 7 O -0.413 6.413 8 N -0.362 5.362 9 C -0.003 4.003 10 C -0.179 4.179 11 C -0.151 4.151 12 C 0.048 3.952 13 H 0.057 0.943 14 C -0.164 4.164 15 C -0.177 4.177 16 C -0.007 4.007 17 N -0.329 5.329 18 C -0.386 4.386 19 H 0.100 0.900 20 C -0.155 4.155 21 N -0.541 5.541 22 Si 0.722 3.278 23 H -0.212 1.212 24 H -0.230 1.230 25 H -0.189 1.189 26 C -0.181 4.181 27 C -0.160 4.160 28 O 0.040 5.960 29 N -0.059 5.059 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.188 0.812 34 H 0.241 0.759 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.129 0.871 49 H 0.132 0.868 50 H 0.126 0.874 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.444 7.412 -12.336 14.798 hybrid contribution 0.015 -0.175 1.111 1.125 sum 3.459 7.237 -11.225 13.796 Atomic orbital electron populations 1.20177 0.85805 1.04245 1.03118 1.23579 0.99171 0.88545 1.02845 1.22363 0.90891 1.01233 1.08604 1.22799 0.95343 0.83785 1.04272 1.19378 0.91725 1.03112 0.95621 1.18959 0.76753 0.87071 0.83155 1.90702 1.50365 1.14168 1.86041 1.46041 1.72629 1.11479 1.06070 1.21576 1.01159 0.94214 0.83310 1.22195 1.05796 0.98089 0.91848 1.21827 1.00232 0.97799 0.95219 1.21124 0.90230 0.92141 0.91675 0.94276 1.22573 0.99107 0.98812 0.95897 1.22787 0.98296 0.99538 0.97085 1.21884 0.93915 0.97181 0.87760 1.44544 1.23235 1.51468 1.13606 1.18519 1.32760 0.89036 0.98310 0.90032 1.25950 0.96219 0.95916 0.97414 1.69775 1.38280 1.07828 1.38200 0.86591 0.80484 0.76667 0.84060 1.21247 1.22980 1.18868 1.23207 0.95027 0.98768 1.01130 1.23154 1.01399 0.99285 0.92152 1.84845 1.21789 1.22058 1.67283 1.73882 0.89109 1.23777 1.19113 0.90298 0.90223 0.89900 0.81150 0.75863 0.91883 0.92093 0.92052 0.87304 0.92306 0.93472 0.91765 0.92115 0.92017 0.91925 0.94207 0.95598 0.92538 0.87075 0.86815 0.87419 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.47 36.01 0.38 -0.39 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 C -0.21 -2.67 11.06 -39.38 -0.44 -3.10 16 4 C 0.00 0.02 6.47 -35.30 -0.23 -0.21 16 5 C -0.09 -1.08 2.39 -156.81 -0.37 -1.46 16 6 C 0.56 7.96 7.10 -10.99 -0.08 7.88 16 7 O -0.54 -9.07 16.57 5.55 0.09 -8.98 16 8 N -0.71 -10.29 5.55 -60.30 -0.33 -10.62 16 9 C 0.12 1.82 5.68 -4.05 -0.02 1.80 16 10 C -0.14 -2.41 4.83 -26.73 -0.13 -2.54 16 11 C -0.11 -1.86 4.71 -26.73 -0.13 -1.98 16 12 C 0.15 2.94 3.21 -66.96 -0.21 2.73 16 13 H 0.04 0.80 8.12 -51.93 -0.42 0.37 16 14 C -0.13 -2.01 6.48 -24.90 -0.16 -2.17 16 15 C -0.14 -2.39 7.08 -24.58 -0.17 -2.56 16 16 C 0.12 2.45 6.24 -2.52 -0.02 2.44 16 17 N -0.60 -13.76 2.31 -162.57 -0.38 -14.13 16 18 C -0.26 -6.83 9.21 -15.06 -0.14 -6.97 16 19 H 0.08 2.29 5.30 -52.49 -0.28 2.01 16 20 C 0.05 1.33 5.50 -17.43 -0.10 1.24 16 21 N -0.90 -26.75 13.97 55.49 0.78 -25.98 16 22 Si 0.89 22.18 25.36 -169.99 -4.31 17.87 16 23 H -0.29 -7.02 6.88 56.52 0.39 -6.63 16 24 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.26 -6.39 6.78 56.52 0.38 -6.01 16 26 C -0.14 -1.26 9.94 -26.69 -0.27 -1.52 16 27 C -0.12 -1.09 9.75 -26.69 -0.26 -1.35 16 28 O 0.11 1.58 11.20 17.17 0.19 1.77 16 29 N -0.36 -5.55 12.07 33.42 0.40 -5.14 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.41 5.73 8.48 -40.82 -0.35 5.38 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 38 H 0.11 2.25 4.49 -51.92 -0.23 2.02 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.94 7.86 -51.92 -0.41 0.53 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 45 H 0.04 0.90 4.87 -51.93 -0.25 0.65 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 51 H 0.12 1.06 7.90 -51.93 -0.41 0.65 16 LS Contribution 410.43 15.07 6.19 6.19 Total: -1.00 -32.13 410.43 -8.58 -40.71 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.26 Total: 6.88 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.95 Total: -8.56 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.47 Total: -55.88 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.28 Total: -7.21 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.31 Total: 17.87 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.13 -8.58 -40.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714525293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.092 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds