Wall clock time and date at job start Wed Apr 1 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.79837 * 2 1 4 4 C 1.35456 * 103.98555 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77543 * 179.97438 * 4 3 2 6 6 C 1.50693 * 115.55444 * 65.35534 * 5 4 3 7 7 O 1.21291 * 119.99797 * 239.80425 * 6 5 4 8 8 N 1.34778 * 120.00503 * 59.80228 * 6 5 4 9 9 C 1.46499 * 120.00329 * 184.55828 * 8 6 5 10 10 C 1.52994 * 109.47061 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47292 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47485 * 186.20750 * 11 10 9 13 13 H 1.09002 * 109.87220 * 51.37978 * 12 11 10 14 14 C 1.54320 * 110.01501 * 172.47848 * 12 11 10 15 15 C 1.55152 * 102.94323 * 141.68131 * 14 12 11 16 16 C 1.54911 * 101.58514 * 324.50208 * 15 14 12 17 17 N 1.47018 * 109.88215 * 290.37039 * 12 11 10 18 18 C 1.36939 * 125.65407 * 61.44668 * 17 12 11 19 19 H 1.07998 * 119.99633 * 303.75451 * 18 17 12 20 20 C 1.38803 * 119.99984 * 123.74870 * 18 17 12 21 21 N 1.31617 * 120.00147 * 173.19880 * 20 18 17 22 22 Si 1.86807 * 120.00160 * 353.19723 * 20 18 17 23 23 H 1.48494 * 109.46832 * 89.56233 * 22 20 18 24 24 H 1.48503 * 109.46799 * 209.56053 * 22 20 18 25 25 H 1.48499 * 109.47074 * 329.56383 * 22 20 18 26 26 C 1.53011 * 117.49423 * 211.02363 * 5 4 3 27 27 C 1.53004 * 117.49389 * 279.67794 * 5 4 3 28 28 O 1.34043 * 106.44336 * 0.23525 * 4 3 2 29 29 N 1.20922 * 111.56431 * 359.57195 * 28 4 3 30 30 H 1.08995 * 109.47007 * 90.00181 * 1 2 3 31 31 H 1.09003 * 109.46530 * 210.00077 * 1 2 3 32 32 H 1.08995 * 109.46955 * 329.99823 * 1 2 3 33 33 H 1.07996 * 128.01253 * 0.03505 * 3 2 1 34 34 H 0.96998 * 119.99269 * 4.55466 * 8 6 5 35 35 H 1.09002 * 109.47095 * 59.99900 * 9 8 6 36 36 H 1.09002 * 109.46867 * 299.99583 * 9 8 6 37 37 H 1.08995 * 109.47390 * 59.99528 * 10 9 8 38 38 H 1.09008 * 109.46881 * 299.99812 * 10 9 8 39 39 H 1.08997 * 109.47821 * 66.20276 * 11 10 9 40 40 H 1.09004 * 109.46755 * 306.20053 * 11 10 9 41 41 H 1.09011 * 110.71876 * 23.32278 * 14 12 11 42 42 H 1.08996 * 110.72683 * 260.04956 * 14 12 11 43 43 H 1.09000 * 111.00778 * 206.42686 * 15 14 12 44 44 H 1.09002 * 111.00746 * 82.57759 * 15 14 12 45 45 H 1.08998 * 110.37177 * 155.84606 * 16 15 14 46 46 H 1.09006 * 110.36388 * 278.06396 * 16 15 14 47 47 H 0.97003 * 120.00596 * 179.97438 * 21 20 18 48 48 H 1.08994 * 117.49445 * 215.00336 * 26 5 4 49 49 H 1.09002 * 117.49529 * 0.02562 * 26 5 4 50 50 H 1.08992 * 117.50115 * 359.97438 * 27 5 4 51 51 H 1.09006 * 117.49098 * 144.98078 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 6 5.1764 2.1879 1.2340 7 8 5.3279 3.3880 1.1453 8 7 5.2533 1.5861 2.4376 9 6 5.4202 2.3914 3.6499 10 6 5.4792 1.4702 4.8700 11 6 5.6528 2.3113 6.1362 12 6 5.8667 1.3874 7.3368 13 1 6.6641 0.6766 7.1200 14 6 6.2300 2.2190 8.5850 15 6 5.4773 1.4824 9.7244 16 6 4.1852 1.0279 9.0007 17 7 4.6224 0.6655 7.6402 18 6 3.9760 -0.1997 6.7982 19 1 3.6728 0.1290 5.8152 20 6 3.7106 -1.4989 7.2082 21 7 2.9741 -2.2889 6.4561 22 14 4.3990 -2.1264 8.8275 23 1 3.4347 -1.8393 9.9197 24 1 4.6215 -3.5918 8.7361 25 1 5.6880 -1.4469 9.1139 26 6 6.0997 0.7241 -0.7015 27 6 5.3951 1.9239 -1.3397 28 8 3.4538 -0.7253 -0.0062 29 7 2.2868 -1.0422 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5138 33 1 2.0709 2.1743 0.0005 34 1 5.1982 0.6198 2.5009 35 1 4.5773 3.0752 3.7508 36 1 6.3458 2.9631 3.5817 37 1 6.3222 0.7868 4.7689 38 1 4.5538 0.8981 4.9383 39 1 4.7596 2.9149 6.2969 40 1 6.5176 2.9650 6.0223 41 1 5.8703 3.2431 8.4843 42 1 7.3057 2.2025 8.7599 43 1 5.2471 2.1628 10.5443 44 1 6.0486 0.6247 10.0794 45 1 3.7531 0.1627 9.5034 46 1 3.4638 1.8442 8.9643 47 1 2.7889 -3.1970 6.7424 48 1 7.0859 0.8912 -0.2684 49 1 5.9473 -0.2521 -1.1617 50 1 4.7796 1.7363 -2.2194 51 1 5.9175 2.8805 -1.3264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714525293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:16 Heat of formation + Delta-G solvation = 46.077443 kcal Electronic energy + Delta-G solvation = -31029.528559 eV Core-core repulsion = 26932.679847 eV Total energy + Delta-G solvation = -4096.848712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.02968 -41.22476 -39.65582 -37.96616 -36.58308 -35.81315 -34.62924 -33.86776 -32.52808 -31.72389 -29.99971 -29.64684 -26.89029 -26.21690 -24.89763 -24.36736 -23.33235 -22.84015 -22.26872 -21.70639 -20.96477 -20.35869 -19.13474 -18.84298 -18.62500 -17.83008 -17.57411 -17.05809 -16.74682 -16.32077 -16.04696 -15.56859 -15.40405 -14.96791 -14.84719 -14.63402 -14.29711 -14.23163 -14.06829 -14.01378 -13.96377 -13.58822 -13.45911 -13.39340 -13.04656 -12.96916 -12.62355 -12.51273 -12.44196 -12.42866 -12.17270 -11.99334 -11.93092 -11.79001 -11.64001 -11.36641 -11.33194 -11.15756 -11.09811 -11.01354 -10.63433 -10.35856 -10.17071 -8.39379 -8.02983 -5.84794 0.30304 1.14122 1.20715 1.30298 1.37085 1.50437 1.89807 2.17807 2.42126 2.54714 3.10349 3.20291 3.28331 3.44222 3.50909 3.65772 3.80440 3.87769 3.99050 4.04496 4.16188 4.16885 4.20768 4.26422 4.44545 4.47180 4.56402 4.60290 4.64267 4.65323 4.72349 4.78928 4.79959 4.81993 4.83718 4.89077 4.93777 4.97852 5.04254 5.10878 5.17375 5.18419 5.21657 5.28557 5.39639 5.44043 5.55623 5.66049 6.02001 6.36089 6.44443 6.98713 7.01318 7.19606 7.53687 8.34311 8.98944 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.003068 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.028234 B = 9123.283152 C =10775.457543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 C -0.219 4.219 4 C 0.005 3.995 5 C -0.115 4.115 6 C 0.560 3.440 7 O -0.562 6.562 8 N -0.715 5.715 9 C 0.131 3.869 10 C -0.130 4.130 11 C -0.104 4.104 12 C 0.145 3.855 13 H 0.026 0.974 14 C -0.115 4.115 15 C -0.130 4.130 16 C 0.106 3.894 17 N -0.619 5.619 18 C -0.238 4.238 19 H 0.057 0.943 20 C -0.009 4.009 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.282 1.282 24 H -0.311 1.311 25 H -0.251 1.251 26 C -0.129 4.129 27 C -0.106 4.106 28 O 0.095 5.905 29 N -0.392 5.392 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.187 0.813 34 H 0.407 0.593 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.031 0.969 47 H 0.261 0.739 48 H 0.121 0.879 49 H 0.125 0.875 50 H 0.125 0.875 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 10.299 -11.825 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 C -0.240 4.240 4 C -0.059 4.059 5 C -0.120 4.120 6 C 0.345 3.655 7 O -0.442 6.442 8 N -0.365 5.365 9 C 0.008 3.992 10 C -0.168 4.168 11 C -0.143 4.143 12 C 0.039 3.961 13 H 0.044 0.956 14 C -0.153 4.153 15 C -0.168 4.168 16 C -0.018 4.018 17 N -0.346 5.346 18 C -0.368 4.368 19 H 0.074 0.926 20 C -0.206 4.206 21 N -0.593 5.593 22 Si 0.776 3.224 23 H -0.209 1.209 24 H -0.239 1.239 25 H -0.175 1.175 26 C -0.166 4.166 27 C -0.143 4.143 28 O 0.029 5.971 29 N -0.098 5.098 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.204 0.796 34 H 0.241 0.759 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.139 0.861 49 H 0.143 0.857 50 H 0.143 0.857 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.304 9.629 -11.913 16.210 hybrid contribution -0.573 -0.746 0.947 1.335 sum 4.730 8.883 -10.966 14.884 Atomic orbital electron populations 1.20336 0.83777 1.04549 1.04754 1.24175 1.00648 0.88362 1.01534 1.22646 0.90829 1.01822 1.08673 1.23079 0.96109 0.83303 1.03398 1.19321 0.92512 1.04505 0.95639 1.19307 0.75732 0.86892 0.83557 1.90681 1.51657 1.15330 1.86488 1.46094 1.72644 1.11453 1.06260 1.21389 1.01330 0.93596 0.82886 1.21966 1.03337 0.98097 0.93364 1.21749 1.01289 0.97467 0.93843 1.21347 0.87960 0.92401 0.94355 0.95589 1.22578 1.00747 0.98874 0.93061 1.22761 0.95866 1.00137 0.98086 1.22023 0.96281 0.96586 0.86879 1.44722 1.24682 1.51286 1.13942 1.18503 1.31082 0.89344 0.97827 0.92571 1.26567 0.97215 0.96469 1.00388 1.69906 1.40938 1.08150 1.40301 0.85707 0.80355 0.75538 0.80843 1.20927 1.23916 1.17514 1.23372 0.94231 0.99368 0.99629 1.23289 1.00653 0.99421 0.90928 1.84796 1.21586 1.22914 1.67754 1.73871 0.89729 1.25084 1.21121 0.87931 0.91021 0.88419 0.79616 0.75864 0.92889 0.90710 0.92280 0.91459 0.93102 0.90034 0.89736 0.89360 0.88563 0.92583 0.96311 0.95101 0.92968 0.86083 0.85675 0.85730 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.47 71.24 0.75 -0.79 16 2 C 0.01 0.30 7.33 43.58 0.32 0.62 16 3 C -0.22 -5.54 11.06 22.40 0.25 -5.29 16 4 C 0.00 0.13 6.47 25.04 0.16 0.29 16 5 C -0.12 -2.56 2.39 -53.67 -0.13 -2.69 16 6 C 0.56 15.73 7.10 87.65 0.62 16.35 16 7 O -0.56 -18.62 16.57 -3.06 -0.05 -18.67 16 8 N -0.72 -20.78 5.55 -463.06 -2.57 -23.35 16 9 C 0.13 3.93 5.68 86.38 0.49 4.42 16 10 C -0.13 -4.44 4.83 30.59 0.15 -4.30 16 11 C -0.10 -3.30 4.71 30.59 0.14 -3.16 16 12 C 0.14 5.23 3.21 45.34 0.15 5.37 16 13 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 14 C -0.11 -3.18 6.48 31.78 0.21 -2.98 16 15 C -0.13 -4.00 7.08 31.98 0.23 -3.78 16 16 C 0.11 4.30 6.24 86.85 0.54 4.84 16 17 N -0.62 -28.03 2.31 -668.26 -1.55 -29.57 16 18 C -0.24 -12.97 9.21 84.03 0.77 -12.20 16 19 H 0.06 3.35 5.30 -2.91 -0.02 3.33 16 20 C -0.01 -0.51 5.50 84.86 0.47 -0.04 16 21 N -0.95 -58.91 13.97 21.65 0.30 -58.61 16 22 Si 0.95 46.62 25.36 68.60 1.74 48.36 16 23 H -0.28 -13.60 6.88 99.48 0.68 -12.92 16 24 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 25 H -0.25 -11.66 6.78 99.48 0.67 -10.99 16 26 C -0.13 -2.03 9.94 30.62 0.30 -1.73 16 27 C -0.11 -1.68 9.75 30.62 0.30 -1.38 16 28 O 0.09 2.83 11.20 71.61 0.80 3.63 16 29 N -0.39 -12.61 12.07 -49.56 -0.60 -13.21 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.19 3.96 8.06 -2.91 -0.02 3.93 16 34 H 0.41 11.86 8.48 -92.71 -0.79 11.07 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 38 H 0.07 2.92 4.49 -2.38 -0.01 2.91 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.06 8.14 -2.38 -0.02 2.05 16 41 H 0.08 2.04 7.86 -2.38 -0.02 2.03 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 1.81 7.82 -2.39 -0.02 1.79 16 45 H 0.02 0.83 4.87 -2.39 -0.01 0.82 16 46 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.12 1.91 7.90 -2.38 -0.02 1.89 16 Total: -1.00 -72.48 410.43 3.89 -68.59 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.10 Total: 29.26 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.72 Total: -6.44 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -4.41 Total: -124.74 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.75 Total: -15.04 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.74 Total: 48.36 kcal Total: -72.48 3.89 -68.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714525293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.667 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds