Wall clock time and date at job start Wed Apr 1 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41379 * 126.80460 * 2 1 4 4 C 1.35448 * 103.99146 * 180.09203 * 3 2 1 5 5 C 1.50695 * 126.78305 * 179.90785 * 4 3 2 6 6 C 1.50705 * 115.55012 * 328.52038 * 5 4 3 7 7 O 1.21277 * 120.00458 * 98.75530 * 6 5 4 8 8 N 1.34779 * 119.99707 * 278.75881 * 6 5 4 9 9 C 1.46495 * 119.99900 * 175.44607 * 8 6 5 10 10 C 1.53008 * 109.47280 * 179.72289 * 9 8 6 11 11 C 1.52996 * 109.47122 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47054 * 174.89071 * 11 10 9 13 13 H 1.09001 * 109.87096 * 304.88894 * 12 11 10 14 14 C 1.54330 * 109.88231 * 183.88028 * 12 11 10 15 15 C 1.55166 * 102.93924 * 218.38555 * 14 12 11 16 16 C 1.54910 * 101.58072 * 35.50254 * 15 14 12 17 17 N 1.47023 * 109.88690 * 65.90584 * 12 11 10 18 18 C 1.36933 * 125.64961 * 298.32151 * 17 12 11 19 19 H 1.08007 * 119.99759 * 337.25280 * 18 17 12 20 20 C 1.38810 * 120.00100 * 157.25944 * 18 17 12 21 21 N 1.31620 * 120.00026 * 160.25235 * 20 18 17 22 22 Si 1.86798 * 120.00127 * 340.25296 * 20 18 17 23 23 H 1.48503 * 109.47257 * 86.32171 * 22 20 18 24 24 H 1.48494 * 109.47438 * 206.32498 * 22 20 18 25 25 H 1.48504 * 109.47197 * 326.32714 * 22 20 18 26 26 C 1.52998 * 117.52072 * 114.21481 * 5 4 3 27 27 C 1.53001 * 117.50134 * 182.84886 * 5 4 3 28 28 O 1.34046 * 106.44315 * 359.65038 * 4 3 2 29 29 N 1.20925 * 111.56323 * 0.23655 * 28 4 3 30 30 H 1.09001 * 109.47024 * 270.29597 * 1 2 3 31 31 H 1.09005 * 109.47021 * 30.29040 * 1 2 3 32 32 H 1.08994 * 109.47037 * 150.29025 * 1 2 3 33 33 H 1.08006 * 128.00466 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99982 * 355.16088 * 8 6 5 35 35 H 1.09005 * 109.46891 * 299.71467 * 9 8 6 36 36 H 1.09002 * 109.47568 * 59.71871 * 9 8 6 37 37 H 1.09000 * 109.46858 * 299.99697 * 10 9 8 38 38 H 1.09002 * 109.47161 * 59.99333 * 10 9 8 39 39 H 1.09007 * 109.47177 * 294.88263 * 11 10 9 40 40 H 1.08996 * 109.47902 * 54.88514 * 11 10 9 41 41 H 1.08997 * 110.71858 * 336.74450 * 14 12 11 42 42 H 1.08991 * 110.71981 * 100.02482 * 14 12 11 43 43 H 1.08999 * 111.00129 * 153.57114 * 15 14 12 44 44 H 1.08995 * 111.00118 * 277.38609 * 15 14 12 45 45 H 1.08991 * 110.37039 * 81.82481 * 16 15 14 46 46 H 1.08997 * 110.36620 * 204.15455 * 16 15 14 47 47 H 0.96997 * 120.00325 * 179.97438 * 21 20 18 48 48 H 1.08998 * 117.50395 * 214.97261 * 26 5 4 49 49 H 1.08998 * 117.49860 * 0.02562 * 26 5 4 50 50 H 1.09003 * 117.49970 * 359.97438 * 27 5 4 51 51 H 1.09002 * 117.49682 * 144.99809 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6068 -0.0021 5 6 4.9022 1.3695 -0.0050 6 6 4.8746 2.6982 -0.7156 7 8 4.7451 3.7231 -0.0804 8 7 4.9938 2.7474 -2.0573 9 6 4.8672 4.0279 -2.7574 10 6 5.0492 3.8077 -4.2605 11 6 4.9164 5.1450 -4.9917 12 6 5.2239 4.9467 -6.4773 13 1 6.2062 4.4891 -6.5944 14 6 5.1880 6.3063 -7.2067 15 6 4.5280 5.9539 -8.5661 16 6 3.5095 4.8655 -8.1444 17 7 4.1975 4.0913 -7.0907 18 6 3.9263 2.7951 -6.7422 19 1 4.6796 2.2001 -6.2472 20 6 2.6833 2.2459 -7.0251 21 7 2.5339 0.9386 -7.0598 22 14 1.2225 3.3619 -7.3566 23 1 1.1975 3.7305 -8.7950 24 1 -0.0332 2.6512 -7.0058 25 1 1.3420 4.5916 -6.5327 26 6 5.7959 1.2479 1.2308 27 6 6.1974 0.5580 -0.0745 28 8 3.4538 -0.7253 0.0046 29 7 2.2868 -1.0423 0.0057 30 1 -0.3633 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5184 32 1 -0.3633 -0.8925 -0.5093 33 1 2.0709 2.1743 0.0004 34 1 5.1675 1.9355 -2.5588 35 1 3.8795 4.4489 -2.5689 36 1 5.6308 4.7168 -2.3960 37 1 6.0368 3.3866 -4.4490 38 1 4.2857 3.1188 -4.6219 39 1 3.8998 5.5217 -4.8784 40 1 5.6190 5.8624 -4.5678 41 1 4.5786 7.0231 -6.6565 42 1 6.1969 6.6905 -7.3561 43 1 4.0206 6.8204 -8.9902 44 1 5.2623 5.5531 -9.2647 45 1 2.6043 5.3259 -7.7487 46 1 3.2700 4.2218 -8.9908 47 1 1.6652 0.5548 -7.2571 48 1 6.3640 2.1288 1.5299 49 1 5.4441 0.6158 2.0462 50 1 6.1094 -0.5276 -0.1177 51 1 7.0295 0.9851 -0.6342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714525294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:20 Heat of formation + Delta-G solvation = 68.134515 kcal Electronic energy + Delta-G solvation = -31122.745725 eV Core-core repulsion = 27026.853480 eV Total energy + Delta-G solvation = -4095.892246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.99704 -40.15315 -38.22549 -37.02772 -35.33885 -34.84086 -32.64969 -32.52219 -31.60062 -29.94947 -28.81396 -28.62886 -25.67003 -24.54061 -23.73927 -23.33554 -22.65081 -21.60134 -21.09082 -20.52350 -19.42095 -19.14764 -17.96075 -17.62785 -16.90470 -16.69013 -16.02377 -15.74725 -15.54213 -15.10901 -14.90758 -14.49847 -13.97190 -13.62065 -13.46244 -13.40695 -13.32012 -13.09962 -13.05734 -12.76863 -12.57538 -12.47917 -12.13971 -11.97759 -11.91312 -11.55366 -11.31017 -11.25482 -11.18518 -11.07836 -11.01999 -10.82190 -10.45484 -10.30617 -10.17537 -10.04881 -10.00974 -9.84389 -9.75990 -9.35805 -9.26515 -8.97543 -8.65669 -7.01554 -5.98723 -3.30339 1.30164 2.15268 2.21202 2.88552 3.25962 3.32337 3.44438 3.45649 3.47272 4.04327 4.12726 4.41056 4.51336 4.51536 4.67643 4.92267 4.95242 5.14027 5.16778 5.22968 5.29821 5.32458 5.35342 5.37093 5.40745 5.49428 5.52746 5.55873 5.60546 5.67513 5.71326 5.76407 5.78930 5.93433 5.99571 6.04266 6.10640 6.12996 6.24158 6.27791 6.37935 6.43331 6.57147 6.64838 6.69564 6.79308 7.01480 7.11837 7.52912 7.74459 8.14953 8.18772 8.27430 8.79793 9.65603 10.19741 11.16832 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.003208 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.189388 B = 8727.028566 C =10390.056225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.213 4.213 4 C 0.011 3.989 5 C -0.090 4.090 6 C 0.558 3.442 7 O -0.532 6.532 8 N -0.711 5.711 9 C 0.120 3.880 10 C -0.140 4.140 11 C -0.115 4.115 12 C 0.160 3.840 13 H 0.042 0.958 14 C -0.127 4.127 15 C -0.132 4.132 16 C 0.109 3.891 17 N -0.604 5.604 18 C -0.235 4.235 19 H 0.093 0.907 20 C 0.023 3.977 21 N -0.909 5.909 22 Si 0.882 3.118 23 H -0.287 1.287 24 H -0.305 1.305 25 H -0.275 1.275 26 C -0.127 4.127 27 C -0.150 4.150 28 O 0.104 5.896 29 N -0.362 5.362 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.171 0.829 34 H 0.407 0.593 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.055 0.945 47 H 0.263 0.737 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.115 0.885 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 3.107 12.807 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C -0.234 4.234 4 C -0.053 4.053 5 C -0.095 4.095 6 C 0.341 3.659 7 O -0.409 6.409 8 N -0.361 5.361 9 C -0.003 4.003 10 C -0.178 4.178 11 C -0.155 4.155 12 C 0.053 3.947 13 H 0.060 0.940 14 C -0.165 4.165 15 C -0.171 4.171 16 C -0.016 4.016 17 N -0.330 5.330 18 C -0.362 4.362 19 H 0.111 0.889 20 C -0.175 4.175 21 N -0.552 5.552 22 Si 0.713 3.287 23 H -0.214 1.214 24 H -0.233 1.233 25 H -0.200 1.200 26 C -0.164 4.164 27 C -0.187 4.187 28 O 0.037 5.963 29 N -0.067 5.067 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.188 0.812 34 H 0.242 0.758 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.132 0.868 49 H 0.127 0.873 50 H 0.134 0.866 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.652 2.294 13.242 14.221 hybrid contribution -1.158 1.022 -0.520 1.629 sum 3.495 3.316 12.722 13.604 Atomic orbital electron populations 1.20187 0.85776 1.04213 1.03217 1.23566 0.99153 0.88547 1.02439 1.22370 0.90912 1.01327 1.08785 1.22662 0.95252 0.83716 1.03634 1.19337 0.87994 0.95307 1.06851 1.18866 0.76689 0.87938 0.82384 1.90707 1.49303 1.34650 1.66244 1.46043 1.71476 1.12372 1.06217 1.21574 1.01454 0.84058 0.93166 1.22128 1.04145 1.00605 0.90903 1.21867 1.00889 0.95735 0.96999 1.21019 0.93304 0.89768 0.90620 0.94036 1.22607 1.00067 0.97367 0.96497 1.22713 0.99041 0.98472 0.96843 1.22004 0.94304 0.92932 0.92351 1.44930 1.40522 1.10554 1.36953 1.18548 0.97362 0.84010 1.36271 0.88907 1.25071 0.97327 0.95290 0.99854 1.69804 1.24123 1.09470 1.51814 0.86962 0.83188 0.80516 0.78029 1.21411 1.23291 1.20042 1.23149 0.99016 1.03284 0.90971 1.23271 0.94577 1.00338 1.00514 1.84789 1.21832 1.21884 1.67799 1.73837 0.89072 1.23745 1.20012 0.90204 0.89779 0.90340 0.81195 0.75808 0.91830 0.92090 0.92323 0.86880 0.92339 0.93402 0.91755 0.91792 0.92002 0.91431 0.95784 0.92677 0.92760 0.86805 0.87305 0.86629 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.47 36.00 0.38 -0.43 16 2 C 0.02 0.30 7.33 -82.10 -0.60 -0.31 16 3 C -0.21 -2.94 10.62 -39.38 -0.42 -3.36 16 4 C 0.01 0.15 6.76 -35.31 -0.24 -0.09 16 5 C -0.09 -1.06 2.39 -156.81 -0.38 -1.44 16 6 C 0.56 7.91 6.61 -10.98 -0.07 7.84 16 7 O -0.53 -9.09 17.02 5.56 0.09 -8.99 16 8 N -0.71 -9.90 5.55 -60.29 -0.33 -10.24 16 9 C 0.12 1.79 5.68 -4.04 -0.02 1.77 16 10 C -0.14 -2.31 4.49 -26.73 -0.12 -2.43 16 11 C -0.11 -1.89 4.74 -26.73 -0.13 -2.02 16 12 C 0.16 2.88 3.24 -66.95 -0.22 2.66 16 13 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.13 -1.93 6.48 -24.89 -0.16 -2.09 16 15 C -0.13 -2.14 7.09 -24.58 -0.17 -2.32 16 16 C 0.11 2.29 4.74 -2.35 -0.01 2.28 16 17 N -0.60 -13.50 2.90 -162.31 -0.47 -13.97 16 18 C -0.23 -6.07 7.94 -15.06 -0.12 -6.19 16 19 H 0.09 2.51 7.10 -52.48 -0.37 2.13 16 20 C 0.02 0.65 5.45 -17.43 -0.10 0.55 16 21 N -0.91 -26.89 13.97 55.49 0.78 -26.11 16 22 Si 0.88 22.14 24.32 -169.99 -4.13 18.01 16 23 H -0.29 -7.05 6.72 56.52 0.38 -6.67 16 24 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 25 H -0.27 -6.79 6.53 56.52 0.37 -6.42 16 26 C -0.13 -1.16 9.87 -26.73 -0.26 -1.42 16 27 C -0.15 -1.31 9.89 -26.73 -0.26 -1.58 16 28 O 0.10 1.47 10.96 17.16 0.19 1.66 16 29 N -0.36 -5.50 12.07 33.42 0.40 -5.09 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.41 5.32 8.48 -40.82 -0.35 4.97 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 2.30 5.22 -51.93 -0.27 2.03 16 39 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.54 5.38 -51.93 -0.28 0.26 16 46 H 0.06 1.24 7.01 -51.93 -0.36 0.88 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.12 0.92 7.99 -51.93 -0.42 0.51 16 51 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -32.04 408.47 -8.64 -40.68 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.41 Total: 6.47 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.91 Total: -8.56 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.37 Total: -55.42 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.28 Total: -7.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.13 Total: 18.01 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.04 -8.64 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714525294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.814 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds