Wall clock time and date at job start Wed Apr 1 2020 04:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41379 * 126.80460 * 2 1 4 4 C 1.35448 * 103.99146 * 180.09203 * 3 2 1 5 5 C 1.50695 * 126.78305 * 179.90785 * 4 3 2 6 6 C 1.50705 * 115.55012 * 328.52038 * 5 4 3 7 7 O 1.21277 * 120.00458 * 98.75530 * 6 5 4 8 8 N 1.34779 * 119.99707 * 278.75881 * 6 5 4 9 9 C 1.46495 * 119.99900 * 175.44607 * 8 6 5 10 10 C 1.53008 * 109.47280 * 179.72289 * 9 8 6 11 11 C 1.52996 * 109.47122 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47054 * 174.89071 * 11 10 9 13 13 H 1.09001 * 109.87096 * 304.88894 * 12 11 10 14 14 C 1.54330 * 109.88231 * 183.88028 * 12 11 10 15 15 C 1.55166 * 102.93924 * 218.38555 * 14 12 11 16 16 C 1.54910 * 101.58072 * 35.50254 * 15 14 12 17 17 N 1.47023 * 109.88690 * 65.90584 * 12 11 10 18 18 C 1.36933 * 125.64961 * 298.32151 * 17 12 11 19 19 H 1.08007 * 119.99759 * 337.25280 * 18 17 12 20 20 C 1.38810 * 120.00100 * 157.25944 * 18 17 12 21 21 N 1.31620 * 120.00026 * 160.25235 * 20 18 17 22 22 Si 1.86798 * 120.00127 * 340.25296 * 20 18 17 23 23 H 1.48503 * 109.47257 * 86.32171 * 22 20 18 24 24 H 1.48494 * 109.47438 * 206.32498 * 22 20 18 25 25 H 1.48504 * 109.47197 * 326.32714 * 22 20 18 26 26 C 1.52998 * 117.52072 * 114.21481 * 5 4 3 27 27 C 1.53001 * 117.50134 * 182.84886 * 5 4 3 28 28 O 1.34046 * 106.44315 * 359.65038 * 4 3 2 29 29 N 1.20925 * 111.56323 * 0.23655 * 28 4 3 30 30 H 1.09001 * 109.47024 * 270.29597 * 1 2 3 31 31 H 1.09005 * 109.47021 * 30.29040 * 1 2 3 32 32 H 1.08994 * 109.47037 * 150.29025 * 1 2 3 33 33 H 1.08006 * 128.00466 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99982 * 355.16088 * 8 6 5 35 35 H 1.09005 * 109.46891 * 299.71467 * 9 8 6 36 36 H 1.09002 * 109.47568 * 59.71871 * 9 8 6 37 37 H 1.09000 * 109.46858 * 299.99697 * 10 9 8 38 38 H 1.09002 * 109.47161 * 59.99333 * 10 9 8 39 39 H 1.09007 * 109.47177 * 294.88263 * 11 10 9 40 40 H 1.08996 * 109.47902 * 54.88514 * 11 10 9 41 41 H 1.08997 * 110.71858 * 336.74450 * 14 12 11 42 42 H 1.08991 * 110.71981 * 100.02482 * 14 12 11 43 43 H 1.08999 * 111.00129 * 153.57114 * 15 14 12 44 44 H 1.08995 * 111.00118 * 277.38609 * 15 14 12 45 45 H 1.08991 * 110.37039 * 81.82481 * 16 15 14 46 46 H 1.08997 * 110.36620 * 204.15455 * 16 15 14 47 47 H 0.96997 * 120.00325 * 179.97438 * 21 20 18 48 48 H 1.08998 * 117.50395 * 214.97261 * 26 5 4 49 49 H 1.08998 * 117.49860 * 0.02562 * 26 5 4 50 50 H 1.09003 * 117.49970 * 359.97438 * 27 5 4 51 51 H 1.09002 * 117.49682 * 144.99809 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6068 -0.0021 5 6 4.9022 1.3695 -0.0050 6 6 4.8746 2.6982 -0.7156 7 8 4.7451 3.7231 -0.0804 8 7 4.9938 2.7474 -2.0573 9 6 4.8672 4.0279 -2.7574 10 6 5.0492 3.8077 -4.2605 11 6 4.9164 5.1450 -4.9917 12 6 5.2239 4.9467 -6.4773 13 1 6.2062 4.4891 -6.5944 14 6 5.1880 6.3063 -7.2067 15 6 4.5280 5.9539 -8.5661 16 6 3.5095 4.8655 -8.1444 17 7 4.1975 4.0913 -7.0907 18 6 3.9263 2.7951 -6.7422 19 1 4.6796 2.2001 -6.2472 20 6 2.6833 2.2459 -7.0251 21 7 2.5339 0.9386 -7.0598 22 14 1.2225 3.3619 -7.3566 23 1 1.1975 3.7305 -8.7950 24 1 -0.0332 2.6512 -7.0058 25 1 1.3420 4.5916 -6.5327 26 6 5.7959 1.2479 1.2308 27 6 6.1974 0.5580 -0.0745 28 8 3.4538 -0.7253 0.0046 29 7 2.2868 -1.0423 0.0057 30 1 -0.3633 0.0053 1.0277 31 1 -0.3633 0.8874 -0.5184 32 1 -0.3633 -0.8925 -0.5093 33 1 2.0709 2.1743 0.0004 34 1 5.1675 1.9355 -2.5588 35 1 3.8795 4.4489 -2.5689 36 1 5.6308 4.7168 -2.3960 37 1 6.0368 3.3866 -4.4490 38 1 4.2857 3.1188 -4.6219 39 1 3.8998 5.5217 -4.8784 40 1 5.6190 5.8624 -4.5678 41 1 4.5786 7.0231 -6.6565 42 1 6.1969 6.6905 -7.3561 43 1 4.0206 6.8204 -8.9902 44 1 5.2623 5.5531 -9.2647 45 1 2.6043 5.3259 -7.7487 46 1 3.2700 4.2218 -8.9908 47 1 1.6652 0.5548 -7.2571 48 1 6.3640 2.1288 1.5299 49 1 5.4441 0.6158 2.0462 50 1 6.1094 -0.5276 -0.1177 51 1 7.0295 0.9851 -0.6342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714525294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:19 Heat of formation + Delta-G solvation = 48.147413 kcal Electronic energy + Delta-G solvation = -31123.612431 eV Core-core repulsion = 27026.853480 eV Total energy + Delta-G solvation = -4096.758952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.07364 -41.24561 -39.73450 -37.99014 -36.60548 -35.86992 -34.59460 -33.84030 -32.62638 -31.72742 -30.05473 -29.68518 -26.89826 -26.20316 -25.02390 -24.39689 -23.45339 -23.06429 -22.20852 -21.84495 -20.80041 -20.37230 -19.05174 -18.76413 -18.71086 -17.72493 -17.40303 -17.16003 -16.85204 -16.63706 -16.05835 -15.54438 -15.29042 -14.99882 -14.88279 -14.68468 -14.37791 -14.28997 -14.27839 -14.03582 -13.82177 -13.69799 -13.50784 -13.42136 -13.06443 -12.76152 -12.65399 -12.59257 -12.47342 -12.41638 -12.22848 -12.10362 -11.97125 -11.78500 -11.63203 -11.41579 -11.39413 -11.15901 -11.07334 -10.94846 -10.67246 -10.29918 -10.17398 -8.91024 -8.11783 -5.36639 0.25352 1.08809 1.12475 1.28696 1.37209 1.43869 1.83357 2.22759 2.44349 2.57977 3.12525 3.12984 3.13760 3.38124 3.47621 3.65514 3.78183 3.85920 3.97243 3.98030 4.14091 4.15582 4.18181 4.26030 4.40581 4.47093 4.50977 4.56170 4.59291 4.63687 4.68744 4.74615 4.76322 4.78047 4.82784 4.86536 4.89599 4.96897 5.03609 5.08248 5.11849 5.15924 5.20109 5.28252 5.36531 5.40340 5.64128 5.66372 5.84028 6.18407 6.38722 6.85500 7.01505 7.12462 7.63010 8.23578 9.07724 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.003208 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.189388 B = 8727.028566 C =10390.056225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 C -0.234 4.234 4 C 0.018 3.982 5 C -0.115 4.115 6 C 0.562 3.438 7 O -0.563 6.563 8 N -0.710 5.710 9 C 0.130 3.870 10 C -0.129 4.129 11 C -0.110 4.110 12 C 0.149 3.851 13 H 0.043 0.957 14 C -0.117 4.117 15 C -0.121 4.121 16 C 0.098 3.902 17 N -0.621 5.621 18 C -0.198 4.198 19 H 0.074 0.926 20 C -0.036 4.036 21 N -0.958 5.958 22 Si 0.931 3.069 23 H -0.281 1.281 24 H -0.319 1.319 25 H -0.270 1.270 26 C -0.112 4.112 27 C -0.131 4.131 28 O 0.099 5.901 29 N -0.388 5.388 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.171 0.829 34 H 0.410 0.590 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.016 0.984 46 H 0.031 0.969 47 H 0.256 0.744 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.125 0.875 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 5.439 13.295 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C -0.256 4.256 4 C -0.046 4.046 5 C -0.120 4.120 6 C 0.347 3.653 7 O -0.441 6.441 8 N -0.360 5.360 9 C 0.007 3.993 10 C -0.166 4.166 11 C -0.150 4.150 12 C 0.043 3.957 13 H 0.061 0.939 14 C -0.155 4.155 15 C -0.159 4.159 16 C -0.027 4.027 17 N -0.347 5.347 18 C -0.327 4.327 19 H 0.092 0.908 20 C -0.230 4.230 21 N -0.606 5.606 22 Si 0.763 3.237 23 H -0.208 1.208 24 H -0.248 1.248 25 H -0.195 1.195 26 C -0.150 4.150 27 C -0.168 4.168 28 O 0.035 5.965 29 N -0.095 5.095 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.189 0.811 34 H 0.246 0.754 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.034 0.966 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.144 0.856 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.511 4.676 13.717 15.888 hybrid contribution -1.595 0.348 -0.660 1.761 sum 4.916 5.024 13.057 14.829 Atomic orbital electron populations 1.20337 0.83782 1.04591 1.04772 1.24096 1.00605 0.88195 1.01320 1.22524 0.91486 1.01505 1.10044 1.22940 0.95877 0.83525 1.02297 1.19297 0.88595 0.94691 1.09394 1.19156 0.75596 0.88481 0.82085 1.90684 1.50671 1.36022 1.66771 1.46056 1.71262 1.12247 1.06436 1.21399 1.01079 0.84718 0.92142 1.21898 1.02882 0.99930 0.91927 1.21812 1.00919 0.96192 0.96087 1.21309 0.91713 0.90886 0.91756 0.93876 1.22624 1.02227 0.95512 0.95127 1.22681 0.97896 0.97595 0.97765 1.22111 0.95595 0.93883 0.91128 1.45142 1.41210 1.10154 1.38198 1.18526 0.96133 0.85386 1.32644 0.90815 1.25536 0.99524 0.95972 1.01965 1.69915 1.24017 1.10970 1.55672 0.86155 0.80444 0.79019 0.78131 1.20785 1.24819 1.19507 1.23296 0.97246 1.03592 0.90849 1.23444 0.92701 1.00677 0.99999 1.84751 1.21610 1.22144 1.68005 1.73816 0.89550 1.24523 1.21614 0.88000 0.89002 0.90291 0.81129 0.75394 0.93348 0.90572 0.91510 0.91259 0.93936 0.89734 0.90589 0.88378 0.89107 0.90760 0.96600 0.95052 0.93513 0.86200 0.86039 0.85642 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.47 71.23 0.75 -0.86 16 2 C 0.02 0.45 7.33 43.58 0.32 0.77 16 3 C -0.23 -6.60 10.62 22.40 0.24 -6.36 16 4 C 0.02 0.47 6.76 25.04 0.17 0.64 16 5 C -0.12 -2.61 2.39 -53.67 -0.13 -2.74 16 6 C 0.56 15.61 6.61 87.66 0.58 16.19 16 7 O -0.56 -18.89 17.02 -3.02 -0.05 -18.94 16 8 N -0.71 -19.52 5.55 -463.04 -2.57 -22.09 16 9 C 0.13 3.75 5.68 86.38 0.49 4.24 16 10 C -0.13 -4.14 4.49 30.60 0.14 -4.00 16 11 C -0.11 -3.38 4.74 30.59 0.15 -3.23 16 12 C 0.15 4.99 3.24 45.34 0.15 5.13 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 14 C -0.12 -3.02 6.48 31.79 0.21 -2.82 16 15 C -0.12 -3.48 7.09 31.99 0.23 -3.26 16 16 C 0.10 3.95 4.74 86.79 0.41 4.37 16 17 N -0.62 -27.31 2.90 -667.43 -1.93 -29.24 16 18 C -0.20 -10.43 7.94 84.03 0.67 -9.76 16 19 H 0.07 4.11 7.10 -2.91 -0.02 4.09 16 20 C -0.04 -2.06 5.45 84.86 0.46 -1.60 16 21 N -0.96 -59.14 13.97 21.65 0.30 -58.84 16 22 Si 0.93 47.01 24.32 68.60 1.67 48.68 16 23 H -0.28 -13.70 6.72 99.48 0.67 -13.03 16 24 H -0.32 -16.66 7.11 99.48 0.71 -15.95 16 25 H -0.27 -13.13 6.53 99.48 0.65 -12.48 16 26 C -0.11 -1.84 9.87 30.60 0.30 -1.53 16 27 C -0.13 -2.04 9.89 30.60 0.30 -1.74 16 28 O 0.10 2.82 10.96 71.57 0.78 3.61 16 29 N -0.39 -11.95 12.07 -49.55 -0.60 -12.54 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.41 10.72 8.48 -92.71 -0.79 9.94 16 35 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.89 5.22 -2.39 -0.01 2.87 16 39 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 1.83 7.85 -2.39 -0.02 1.81 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.02 0.69 5.38 -2.39 -0.01 0.68 16 46 H 0.03 1.40 7.01 -2.39 -0.02 1.38 16 47 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.13 1.74 7.99 -2.39 -0.02 1.72 16 51 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -72.24 408.47 3.08 -69.16 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.05 Total: 26.76 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.42 Total: -6.55 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -4.80 Total: -122.72 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.73 Total: -15.33 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.67 Total: 48.68 kcal Total: -72.24 3.08 -69.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714525294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.311 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds