Wall clock time and date at job start Wed Apr 1 2020 04:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41380 * 126.79958 * 2 1 4 4 C 1.35447 * 103.98864 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.78043 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.54731 * 330.22849 * 5 4 3 7 7 O 1.21286 * 119.99776 * 113.05020 * 6 5 4 8 8 N 1.34782 * 120.00340 * 293.05310 * 6 5 4 9 9 C 1.46925 * 120.62542 * 4.94763 * 8 6 5 10 10 C 1.53192 * 108.77346 * 233.62776 * 9 8 6 11 11 C 1.53034 * 109.31463 * 305.36804 * 10 9 8 12 12 C 1.53045 * 109.53872 * 61.36290 * 11 10 9 13 13 H 1.08994 * 109.49620 * 178.68148 * 12 11 10 14 14 C 1.53002 * 109.49535 * 58.61946 * 12 11 10 15 15 C 1.46923 * 120.63252 * 184.97010 * 8 6 5 16 16 H 1.09004 * 109.70252 * 246.22715 * 15 8 6 17 17 C 1.53001 * 109.58740 * 6.58055 * 15 8 6 18 18 N 1.46501 * 109.47369 * 286.79640 * 17 15 8 19 19 C 1.36931 * 119.99989 * 184.84381 * 18 17 15 20 20 H 1.08000 * 120.00058 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00090 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47088 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46799 * 120.00394 * 23 21 19 26 26 H 1.48499 * 109.47172 * 239.99863 * 23 21 19 27 27 C 1.52993 * 117.50175 * 115.90033 * 5 4 3 28 28 C 1.52995 * 117.49926 * 184.56399 * 5 4 3 29 29 O 1.34035 * 106.44376 * 0.23849 * 4 3 2 30 30 N 1.20926 * 111.56848 * 359.56508 * 29 4 3 31 31 H 1.09004 * 109.47689 * 90.00114 * 1 2 3 32 32 H 1.09001 * 109.46806 * 209.99836 * 1 2 3 33 33 H 1.09000 * 109.47505 * 329.99678 * 1 2 3 34 34 H 1.08005 * 128.00726 * 359.96491 * 3 2 1 35 35 H 1.09003 * 109.58635 * 113.84356 * 9 8 6 36 36 H 1.08997 * 109.58923 * 353.41908 * 9 8 6 37 37 H 1.08999 * 109.49524 * 65.32125 * 10 9 8 38 38 H 1.09007 * 109.49265 * 185.38365 * 10 9 8 39 39 H 1.08999 * 109.46164 * 181.38836 * 11 10 9 40 40 H 1.09003 * 109.45725 * 301.35850 * 11 10 9 41 41 H 1.09001 * 109.47238 * 59.99861 * 14 12 11 42 42 H 1.08993 * 109.47235 * 180.02562 * 14 12 11 43 43 H 1.08998 * 109.46771 * 300.00101 * 14 12 11 44 44 H 1.09004 * 109.46586 * 46.79284 * 17 15 8 45 45 H 1.08998 * 109.46775 * 166.79147 * 17 15 8 46 46 H 0.97003 * 119.99716 * 4.84354 * 18 17 15 47 47 H 0.97000 * 120.00208 * 179.97438 * 22 21 19 48 48 H 1.08999 * 117.50133 * 214.99896 * 27 5 4 49 49 H 1.08998 * 117.50382 * 0.02647 * 27 5 4 50 50 H 1.08996 * 117.49986 * 359.97266 * 28 5 4 51 51 H 1.09001 * 117.49827 * 144.97053 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3538 1.1321 0.0000 4 6 3.6024 0.6070 0.0006 5 6 4.9021 1.3698 0.0003 6 6 4.8653 2.7161 -0.6757 7 8 5.0054 3.7274 -0.0210 8 7 4.6768 2.7964 -2.0079 9 6 4.3980 1.5898 -2.7985 10 6 5.4063 1.5103 -3.9490 11 6 5.3616 2.8122 -4.7521 12 6 5.7510 3.9846 -3.8486 13 1 5.7417 4.9083 -4.4271 14 6 7.1535 3.7499 -3.2837 15 6 4.7466 4.0921 -2.6971 16 1 3.7643 4.3517 -3.0920 17 6 5.2061 5.1715 -1.7148 18 7 4.1162 5.4831 -0.7867 19 6 4.2612 6.4950 0.1244 20 1 5.1788 7.0635 0.1586 21 6 3.2283 6.7906 1.0035 22 7 2.1099 6.0980 0.9615 23 14 3.4263 8.1705 2.2469 24 1 4.7671 8.7893 2.0904 25 1 2.3779 9.1971 2.0181 26 1 3.2909 7.6224 3.6204 27 6 5.8112 1.2170 1.2213 28 6 6.1961 0.5606 -0.1069 29 8 3.4537 -0.7251 -0.0045 30 7 2.2868 -1.0422 0.0006 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 2.0708 2.1744 -0.0005 35 1 3.3867 1.6429 -3.2019 36 1 4.4953 0.7077 -2.1656 37 1 6.4084 1.3662 -3.5451 38 1 5.1518 0.6727 -4.5985 39 1 6.0606 2.7486 -5.5861 40 1 4.3530 2.9683 -5.1347 41 1 7.8670 3.6709 -4.1039 42 1 7.4302 4.5848 -2.6400 43 1 7.1620 2.8266 -2.7045 44 1 6.0681 4.8094 -1.1544 45 1 5.4823 6.0704 -2.2659 46 1 3.2920 4.9727 -0.8177 47 1 1.3882 6.3043 1.5760 48 1 6.3828 2.0902 1.5357 49 1 5.4696 0.5644 2.0247 50 1 6.1074 -0.5235 -0.1768 51 1 7.0207 1.0018 -0.6667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715406194.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:01 Heat of formation + Delta-G solvation = 105.957753 kcal Electronic energy + Delta-G solvation = -33662.248780 eV Core-core repulsion = 29567.996673 eV Total energy + Delta-G solvation = -4094.252107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.81512 -40.60487 -38.10049 -36.44493 -34.67388 -34.26244 -33.24197 -32.06193 -31.32870 -30.11850 -28.61024 -27.24364 -26.12451 -24.75351 -23.87334 -23.07902 -22.68229 -22.46457 -21.22119 -20.52626 -19.18138 -18.21197 -17.65903 -17.45447 -16.73131 -16.27586 -15.63131 -15.18011 -15.00032 -14.77344 -14.38412 -14.29396 -13.73225 -13.69015 -13.42770 -13.31894 -13.15912 -13.04930 -12.86760 -12.78962 -12.50874 -12.39076 -12.18308 -12.04016 -11.65058 -11.54679 -11.43266 -11.18586 -11.00385 -10.92960 -10.91409 -10.71709 -10.65079 -10.60496 -10.33546 -10.16997 -9.86695 -9.81975 -9.51034 -9.02489 -8.68400 -8.48924 -8.05886 -6.51422 -5.55332 -2.74554 1.51305 2.35663 2.70576 3.24576 3.45005 3.54454 3.59670 3.61547 3.80939 4.29298 4.36241 4.59700 4.72726 4.78848 4.82481 4.86315 4.92170 4.94193 5.10407 5.24977 5.31126 5.37529 5.44063 5.50072 5.53108 5.55826 5.60782 5.66241 5.71621 5.79201 5.81071 5.82903 5.85587 5.88585 5.89962 5.95182 5.98562 6.01484 6.11737 6.13273 6.19356 6.28911 6.31679 6.47333 6.53674 6.67833 6.89579 7.24044 7.87354 7.87961 8.35597 8.62961 8.83963 9.74948 10.35058 10.69565 11.68829 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008162 B = 0.005345 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.579040 B = 5236.871327 C = 7126.474673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.020 3.980 3 C -0.206 4.206 4 C 0.010 3.990 5 C -0.080 4.080 6 C 0.518 3.482 7 O -0.423 6.423 8 N -0.602 5.602 9 C 0.113 3.887 10 C -0.135 4.135 11 C -0.113 4.113 12 C -0.100 4.100 13 H 0.079 0.921 14 C -0.144 4.144 15 C 0.147 3.853 16 H 0.069 0.931 17 C 0.162 3.838 18 N -0.695 5.695 19 C -0.206 4.206 20 H 0.064 0.936 21 C -0.021 4.021 22 N -0.937 5.937 23 Si 0.899 3.101 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.296 1.296 27 C -0.127 4.127 28 C -0.154 4.154 29 O 0.092 5.908 30 N -0.372 5.372 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.177 0.823 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.016 0.984 46 H 0.379 0.621 47 H 0.248 0.752 48 H 0.116 0.884 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -14.810 -9.867 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C -0.228 4.228 4 C -0.053 4.053 5 C -0.085 4.085 6 C 0.300 3.700 7 O -0.290 6.290 8 N -0.339 5.339 9 C -0.010 4.010 10 C -0.173 4.173 11 C -0.150 4.150 12 C -0.119 4.119 13 H 0.098 0.902 14 C -0.201 4.201 15 C 0.044 3.956 16 H 0.087 0.913 17 C 0.034 3.966 18 N -0.338 5.338 19 C -0.338 4.338 20 H 0.082 0.918 21 C -0.215 4.215 22 N -0.588 5.588 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.224 1.224 26 H -0.223 1.223 27 C -0.164 4.164 28 C -0.191 4.191 29 O 0.027 5.973 30 N -0.079 5.079 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.195 0.805 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.033 0.967 46 H 0.213 0.787 47 H 0.058 0.942 48 H 0.135 0.865 49 H 0.121 0.879 50 H 0.125 0.875 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.773 -15.383 -9.364 18.911 hybrid contribution -0.554 1.251 0.708 1.541 sum 5.219 -14.131 -8.656 17.374 Atomic orbital electron populations 1.20167 0.85989 1.03815 1.03299 1.23565 0.99001 0.88741 1.02475 1.22557 0.90717 1.01749 1.07756 1.22963 0.95984 0.83138 1.03261 1.19632 0.86650 0.95395 1.06791 1.18941 0.81094 0.87850 0.82079 1.91276 1.42321 1.31916 1.63470 1.47690 1.72671 1.07329 1.06190 1.21598 0.98166 0.88047 0.93213 1.21953 1.00275 0.97845 0.97252 1.21531 1.01482 0.94440 0.97564 1.21468 0.95719 0.98628 0.96122 0.90233 1.21850 0.95379 1.02374 1.00529 1.21510 0.98269 0.83187 0.92645 0.91269 1.20895 0.93729 0.92180 0.89771 1.42210 1.14309 1.39017 1.38262 1.19169 0.98860 1.06577 1.09163 0.91782 1.24572 0.96775 1.00022 1.00141 1.69652 1.05494 1.42994 1.40691 0.86203 0.76830 0.81963 0.81818 1.20887 1.22385 1.22319 1.23131 0.99354 1.03199 0.90753 1.23161 0.95367 0.99486 1.01099 1.84748 1.21763 1.22418 1.68351 1.73798 0.89210 1.23906 1.20964 0.90242 0.90831 0.89653 0.80539 0.92179 0.90358 0.91121 0.91410 0.91983 0.91952 0.93355 0.92041 0.92527 0.94400 0.96657 0.78722 0.94192 0.86547 0.87855 0.87475 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.47 36.00 0.38 -0.48 16 2 C 0.02 0.30 7.33 -82.10 -0.60 -0.30 16 3 C -0.21 -3.34 10.59 -39.38 -0.42 -3.76 16 4 C 0.01 0.15 4.99 -35.30 -0.18 -0.03 16 5 C -0.08 -1.16 1.33 -156.82 -0.21 -1.37 16 6 C 0.52 9.00 6.21 -10.98 -0.07 8.93 16 7 O -0.42 -9.50 10.46 5.55 0.06 -9.44 16 8 N -0.60 -8.99 2.41 -165.22 -0.40 -9.39 16 9 C 0.11 1.36 6.01 -3.71 -0.02 1.34 16 10 C -0.14 -1.31 5.74 -26.61 -0.15 -1.46 16 11 C -0.11 -1.12 5.43 -26.69 -0.14 -1.27 16 12 C -0.10 -1.22 2.77 -90.50 -0.25 -1.47 16 13 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.14 -1.70 8.23 37.16 0.31 -1.40 16 15 C 0.15 2.34 2.61 -67.60 -0.18 2.17 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 17 C 0.16 3.30 3.94 -4.04 -0.02 3.29 16 18 N -0.70 -17.82 3.20 -59.91 -0.19 -18.01 16 19 C -0.21 -5.92 9.72 -15.06 -0.15 -6.07 16 20 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 22 N -0.94 -28.95 13.06 55.49 0.72 -28.22 16 23 Si 0.90 23.42 29.55 -169.99 -5.02 18.39 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 27 C -0.13 -1.68 9.76 -26.70 -0.26 -1.94 16 28 C -0.15 -1.70 9.52 -26.70 -0.25 -1.95 16 29 O 0.09 1.35 10.97 17.19 0.19 1.54 16 30 N -0.37 -5.69 12.07 33.42 0.40 -5.29 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.18 3.25 8.06 -52.48 -0.42 2.83 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.94 4.98 -51.93 -0.26 0.68 16 37 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.82 6.66 -51.93 -0.35 0.48 16 43 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 44 H 0.04 0.83 5.35 -51.93 -0.28 0.55 16 45 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 46 H 0.38 10.38 7.25 -40.82 -0.30 10.09 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.12 1.66 8.02 -51.93 -0.42 1.25 16 49 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.11 1.01 8.00 -51.93 -0.42 0.60 16 51 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -33.25 395.75 -8.70 -41.94 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.11 Total: 8.98 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.31 Total: -6.47 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.54 Total: -60.91 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.25 Total: -7.90 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.25 -8.70 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715406194.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.901 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds