Wall clock time and date at job start Wed Apr 1 2020 04:31:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.41380 * 126.79958 * 2 1
4 4 C 1.35447 * 103.98864 * 179.97438 * 3 2 1
5 5 C 1.50701 * 126.78043 * 179.97438 * 4 3 2
6 6 C 1.50700 * 115.54731 * 330.22849 * 5 4 3
7 7 O 1.21286 * 119.99776 * 113.05020 * 6 5 4
8 8 N 1.34782 * 120.00340 * 293.05310 * 6 5 4
9 9 C 1.46925 * 120.62542 * 4.94763 * 8 6 5
10 10 C 1.53192 * 108.77346 * 233.62776 * 9 8 6
11 11 C 1.53034 * 109.31463 * 305.36804 * 10 9 8
12 12 C 1.53045 * 109.53872 * 61.36290 * 11 10 9
13 13 H 1.08994 * 109.49620 * 178.68148 * 12 11 10
14 14 C 1.53002 * 109.49535 * 58.61946 * 12 11 10
15 15 C 1.46923 * 120.63252 * 184.97010 * 8 6 5
16 16 H 1.09004 * 109.70252 * 246.22715 * 15 8 6
17 17 C 1.53001 * 109.58740 * 6.58055 * 15 8 6
18 18 N 1.46501 * 109.47369 * 286.79640 * 17 15 8
19 19 C 1.36931 * 119.99989 * 184.84381 * 18 17 15
20 20 H 1.08000 * 120.00058 * 0.02562 * 19 18 17
21 21 C 1.38813 * 120.00090 * 179.97438 * 19 18 17
22 22 N 1.31622 * 119.99858 * 0.02562 * 21 19 18
23 23 Si 1.86801 * 120.00121 * 179.97438 * 21 19 18
24 24 H 1.48495 * 109.47088 * 0.02562 * 23 21 19
25 25 H 1.48506 * 109.46799 * 120.00394 * 23 21 19
26 26 H 1.48499 * 109.47172 * 239.99863 * 23 21 19
27 27 C 1.52993 * 117.50175 * 115.90033 * 5 4 3
28 28 C 1.52995 * 117.49926 * 184.56399 * 5 4 3
29 29 O 1.34035 * 106.44376 * 0.23849 * 4 3 2
30 30 N 1.20926 * 111.56848 * 359.56508 * 29 4 3
31 31 H 1.09004 * 109.47689 * 90.00114 * 1 2 3
32 32 H 1.09001 * 109.46806 * 209.99836 * 1 2 3
33 33 H 1.09000 * 109.47505 * 329.99678 * 1 2 3
34 34 H 1.08005 * 128.00726 * 359.96491 * 3 2 1
35 35 H 1.09003 * 109.58635 * 113.84356 * 9 8 6
36 36 H 1.08997 * 109.58923 * 353.41908 * 9 8 6
37 37 H 1.08999 * 109.49524 * 65.32125 * 10 9 8
38 38 H 1.09007 * 109.49265 * 185.38365 * 10 9 8
39 39 H 1.08999 * 109.46164 * 181.38836 * 11 10 9
40 40 H 1.09003 * 109.45725 * 301.35850 * 11 10 9
41 41 H 1.09001 * 109.47238 * 59.99861 * 14 12 11
42 42 H 1.08993 * 109.47235 * 180.02562 * 14 12 11
43 43 H 1.08998 * 109.46771 * 300.00101 * 14 12 11
44 44 H 1.09004 * 109.46586 * 46.79284 * 17 15 8
45 45 H 1.08998 * 109.46775 * 166.79147 * 17 15 8
46 46 H 0.97003 * 119.99716 * 4.84354 * 18 17 15
47 47 H 0.97000 * 120.00208 * 179.97438 * 22 21 19
48 48 H 1.08999 * 117.50133 * 214.99896 * 27 5 4
49 49 H 1.08998 * 117.50382 * 0.02647 * 27 5 4
50 50 H 1.08996 * 117.49986 * 359.97266 * 28 5 4
51 51 H 1.09001 * 117.49827 * 144.97053 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3538 1.1321 0.0000
4 6 3.6024 0.6070 0.0006
5 6 4.9021 1.3698 0.0003
6 6 4.8653 2.7161 -0.6757
7 8 5.0054 3.7274 -0.0210
8 7 4.6768 2.7964 -2.0079
9 6 4.3980 1.5898 -2.7985
10 6 5.4063 1.5103 -3.9490
11 6 5.3616 2.8122 -4.7521
12 6 5.7510 3.9846 -3.8486
13 1 5.7417 4.9083 -4.4271
14 6 7.1535 3.7499 -3.2837
15 6 4.7466 4.0921 -2.6971
16 1 3.7643 4.3517 -3.0920
17 6 5.2061 5.1715 -1.7148
18 7 4.1162 5.4831 -0.7867
19 6 4.2612 6.4950 0.1244
20 1 5.1788 7.0635 0.1586
21 6 3.2283 6.7906 1.0035
22 7 2.1099 6.0980 0.9615
23 14 3.4263 8.1705 2.2469
24 1 4.7671 8.7893 2.0904
25 1 2.3779 9.1971 2.0181
26 1 3.2909 7.6224 3.6204
27 6 5.8112 1.2170 1.2213
28 6 6.1961 0.5606 -0.1069
29 8 3.4537 -0.7251 -0.0045
30 7 2.2868 -1.0422 0.0006
31 1 -0.3634 0.0000 -1.0277
32 1 -0.3633 -0.8900 0.5138
33 1 -0.3634 0.8899 0.5139
34 1 2.0708 2.1744 -0.0005
35 1 3.3867 1.6429 -3.2019
36 1 4.4953 0.7077 -2.1656
37 1 6.4084 1.3662 -3.5451
38 1 5.1518 0.6727 -4.5985
39 1 6.0606 2.7486 -5.5861
40 1 4.3530 2.9683 -5.1347
41 1 7.8670 3.6709 -4.1039
42 1 7.4302 4.5848 -2.6400
43 1 7.1620 2.8266 -2.7045
44 1 6.0681 4.8094 -1.1544
45 1 5.4823 6.0704 -2.2659
46 1 3.2920 4.9727 -0.8177
47 1 1.3882 6.3043 1.5760
48 1 6.3828 2.0902 1.5357
49 1 5.4696 0.5644 2.0247
50 1 6.1074 -0.5235 -0.1768
51 1 7.0207 1.0018 -0.6667
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715406194.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:01
Heat of formation + Delta-G solvation = 105.957753 kcal
Electronic energy + Delta-G solvation = -33662.248780 eV
Core-core repulsion = 29567.996673 eV
Total energy + Delta-G solvation = -4094.252107 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-44.81512 -40.60487 -38.10049 -36.44493 -34.67388 -34.26244 -33.24197 -32.06193
-31.32870 -30.11850 -28.61024 -27.24364 -26.12451 -24.75351 -23.87334 -23.07902
-22.68229 -22.46457 -21.22119 -20.52626 -19.18138 -18.21197 -17.65903 -17.45447
-16.73131 -16.27586 -15.63131 -15.18011 -15.00032 -14.77344 -14.38412 -14.29396
-13.73225 -13.69015 -13.42770 -13.31894 -13.15912 -13.04930 -12.86760 -12.78962
-12.50874 -12.39076 -12.18308 -12.04016 -11.65058 -11.54679 -11.43266 -11.18586
-11.00385 -10.92960 -10.91409 -10.71709 -10.65079 -10.60496 -10.33546 -10.16997
-9.86695 -9.81975 -9.51034 -9.02489 -8.68400 -8.48924 -8.05886 -6.51422
-5.55332 -2.74554 1.51305 2.35663 2.70576 3.24576 3.45005 3.54454
3.59670 3.61547 3.80939 4.29298 4.36241 4.59700 4.72726 4.78848
4.82481 4.86315 4.92170 4.94193 5.10407 5.24977 5.31126 5.37529
5.44063 5.50072 5.53108 5.55826 5.60782 5.66241 5.71621 5.79201
5.81071 5.82903 5.85587 5.88585 5.89962 5.95182 5.98562 6.01484
6.11737 6.13273 6.19356 6.28911 6.31679 6.47333 6.53674 6.67833
6.89579 7.24044 7.87354 7.87961 8.35597 8.62961 8.83963 9.74948
10.35058 10.69565 11.68829
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008162 B = 0.005345 C = 0.003928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3429.579040 B = 5236.871327 C = 7126.474673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.020 3.980
3 C -0.206 4.206
4 C 0.010 3.990
5 C -0.080 4.080
6 C 0.518 3.482
7 O -0.423 6.423
8 N -0.602 5.602
9 C 0.113 3.887
10 C -0.135 4.135
11 C -0.113 4.113
12 C -0.100 4.100
13 H 0.079 0.921
14 C -0.144 4.144
15 C 0.147 3.853
16 H 0.069 0.931
17 C 0.162 3.838
18 N -0.695 5.695
19 C -0.206 4.206
20 H 0.064 0.936
21 C -0.021 4.021
22 N -0.937 5.937
23 Si 0.899 3.101
24 H -0.283 1.283
25 H -0.296 1.296
26 H -0.296 1.296
27 C -0.127 4.127
28 C -0.154 4.154
29 O 0.092 5.908
30 N -0.372 5.372
31 H 0.079 0.921
32 H 0.073 0.927
33 H 0.085 0.915
34 H 0.177 0.823
35 H 0.060 0.940
36 H 0.078 0.922
37 H 0.070 0.930
38 H 0.067 0.933
39 H 0.061 0.939
40 H 0.062 0.938
41 H 0.047 0.953
42 H 0.061 0.939
43 H 0.056 0.944
44 H 0.039 0.961
45 H 0.016 0.984
46 H 0.379 0.621
47 H 0.248 0.752
48 H 0.116 0.884
49 H 0.103 0.897
50 H 0.107 0.893
51 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.830 -14.810 -9.867 18.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.138 4.138
3 C -0.228 4.228
4 C -0.053 4.053
5 C -0.085 4.085
6 C 0.300 3.700
7 O -0.290 6.290
8 N -0.339 5.339
9 C -0.010 4.010
10 C -0.173 4.173
11 C -0.150 4.150
12 C -0.119 4.119
13 H 0.098 0.902
14 C -0.201 4.201
15 C 0.044 3.956
16 H 0.087 0.913
17 C 0.034 3.966
18 N -0.338 5.338
19 C -0.338 4.338
20 H 0.082 0.918
21 C -0.215 4.215
22 N -0.588 5.588
23 Si 0.732 3.268
24 H -0.209 1.209
25 H -0.224 1.224
26 H -0.223 1.223
27 C -0.164 4.164
28 C -0.191 4.191
29 O 0.027 5.973
30 N -0.079 5.079
31 H 0.098 0.902
32 H 0.092 0.908
33 H 0.103 0.897
34 H 0.195 0.805
35 H 0.078 0.922
36 H 0.096 0.904
37 H 0.089 0.911
38 H 0.086 0.914
39 H 0.080 0.920
40 H 0.080 0.920
41 H 0.066 0.934
42 H 0.080 0.920
43 H 0.075 0.925
44 H 0.056 0.944
45 H 0.033 0.967
46 H 0.213 0.787
47 H 0.058 0.942
48 H 0.135 0.865
49 H 0.121 0.879
50 H 0.125 0.875
51 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 5.773 -15.383 -9.364 18.911
hybrid contribution -0.554 1.251 0.708 1.541
sum 5.219 -14.131 -8.656 17.374
Atomic orbital electron populations
1.20167 0.85989 1.03815 1.03299 1.23565 0.99001 0.88741 1.02475
1.22557 0.90717 1.01749 1.07756 1.22963 0.95984 0.83138 1.03261
1.19632 0.86650 0.95395 1.06791 1.18941 0.81094 0.87850 0.82079
1.91276 1.42321 1.31916 1.63470 1.47690 1.72671 1.07329 1.06190
1.21598 0.98166 0.88047 0.93213 1.21953 1.00275 0.97845 0.97252
1.21531 1.01482 0.94440 0.97564 1.21468 0.95719 0.98628 0.96122
0.90233 1.21850 0.95379 1.02374 1.00529 1.21510 0.98269 0.83187
0.92645 0.91269 1.20895 0.93729 0.92180 0.89771 1.42210 1.14309
1.39017 1.38262 1.19169 0.98860 1.06577 1.09163 0.91782 1.24572
0.96775 1.00022 1.00141 1.69652 1.05494 1.42994 1.40691 0.86203
0.76830 0.81963 0.81818 1.20887 1.22385 1.22319 1.23131 0.99354
1.03199 0.90753 1.23161 0.95367 0.99486 1.01099 1.84748 1.21763
1.22418 1.68351 1.73798 0.89210 1.23906 1.20964 0.90242 0.90831
0.89653 0.80539 0.92179 0.90358 0.91121 0.91410 0.91983 0.91952
0.93355 0.92041 0.92527 0.94400 0.96657 0.78722 0.94192 0.86547
0.87855 0.87475 0.87571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.86 10.47 36.00 0.38 -0.48 16
2 C 0.02 0.30 7.33 -82.10 -0.60 -0.30 16
3 C -0.21 -3.34 10.59 -39.38 -0.42 -3.76 16
4 C 0.01 0.15 4.99 -35.30 -0.18 -0.03 16
5 C -0.08 -1.16 1.33 -156.82 -0.21 -1.37 16
6 C 0.52 9.00 6.21 -10.98 -0.07 8.93 16
7 O -0.42 -9.50 10.46 5.55 0.06 -9.44 16
8 N -0.60 -8.99 2.41 -165.22 -0.40 -9.39 16
9 C 0.11 1.36 6.01 -3.71 -0.02 1.34 16
10 C -0.14 -1.31 5.74 -26.61 -0.15 -1.46 16
11 C -0.11 -1.12 5.43 -26.69 -0.14 -1.27 16
12 C -0.10 -1.22 2.77 -90.50 -0.25 -1.47 16
13 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
14 C -0.14 -1.70 8.23 37.16 0.31 -1.40 16
15 C 0.15 2.34 2.61 -67.60 -0.18 2.17 16
16 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16
17 C 0.16 3.30 3.94 -4.04 -0.02 3.29 16
18 N -0.70 -17.82 3.20 -59.91 -0.19 -18.01 16
19 C -0.21 -5.92 9.72 -15.06 -0.15 -6.07 16
20 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16
21 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16
22 N -0.94 -28.95 13.06 55.49 0.72 -28.22 16
23 Si 0.90 23.42 29.55 -169.99 -5.02 18.39 16
24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16
25 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16
26 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16
27 C -0.13 -1.68 9.76 -26.70 -0.26 -1.94 16
28 C -0.15 -1.70 9.52 -26.70 -0.25 -1.95 16
29 O 0.09 1.35 10.97 17.19 0.19 1.54 16
30 N -0.37 -5.69 12.07 33.42 0.40 -5.29 16
31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.18 3.25 8.06 -52.48 -0.42 2.83 16
35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.08 0.94 4.98 -51.93 -0.26 0.68 16
37 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16
38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
42 H 0.06 0.82 6.66 -51.93 -0.35 0.48 16
43 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16
44 H 0.04 0.83 5.35 -51.93 -0.28 0.55 16
45 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16
46 H 0.38 10.38 7.25 -40.82 -0.30 10.09 16
47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16
48 H 0.12 1.66 8.02 -51.93 -0.42 1.25 16
49 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16
50 H 0.11 1.01 8.00 -51.93 -0.42 0.60 16
51 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 395.75 15.07 5.96 5.96
Total: -1.00 -33.25 395.75 -8.70 -41.94
By element:
Atomic # 1 Polarization: 17.09 SS G_CDS: -8.11 Total: 8.98 kcal
Atomic # 6 Polarization: -4.16 SS G_CDS: -2.31 Total: -6.47 kcal
Atomic # 7 Polarization: -61.45 SS G_CDS: 0.54 Total: -60.91 kcal
Atomic # 8 Polarization: -8.14 SS G_CDS: 0.25 Total: -7.90 kcal
Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.39 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -33.25 -8.70 -41.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715406194.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.901 kcal
(2) G-P(sol) polarization free energy of solvation -33.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds