Wall clock time and date at job start Wed Apr 1 2020 04:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41380 * 126.79958 * 2 1 4 4 C 1.35447 * 103.98864 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.78043 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.54731 * 330.22849 * 5 4 3 7 7 O 1.21286 * 119.99776 * 113.05020 * 6 5 4 8 8 N 1.34782 * 120.00340 * 293.05310 * 6 5 4 9 9 C 1.46925 * 120.62542 * 4.94763 * 8 6 5 10 10 C 1.53192 * 108.77346 * 233.62776 * 9 8 6 11 11 C 1.53034 * 109.31463 * 305.36804 * 10 9 8 12 12 C 1.53045 * 109.53872 * 61.36290 * 11 10 9 13 13 H 1.08994 * 109.49620 * 178.68148 * 12 11 10 14 14 C 1.53002 * 109.49535 * 58.61946 * 12 11 10 15 15 C 1.46923 * 120.63252 * 184.97010 * 8 6 5 16 16 H 1.09004 * 109.70252 * 246.22715 * 15 8 6 17 17 C 1.53001 * 109.58740 * 6.58055 * 15 8 6 18 18 N 1.46501 * 109.47369 * 286.79640 * 17 15 8 19 19 C 1.36931 * 119.99989 * 184.84381 * 18 17 15 20 20 H 1.08000 * 120.00058 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00090 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47088 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46799 * 120.00394 * 23 21 19 26 26 H 1.48499 * 109.47172 * 239.99863 * 23 21 19 27 27 C 1.52993 * 117.50175 * 115.90033 * 5 4 3 28 28 C 1.52995 * 117.49926 * 184.56399 * 5 4 3 29 29 O 1.34035 * 106.44376 * 0.23849 * 4 3 2 30 30 N 1.20926 * 111.56848 * 359.56508 * 29 4 3 31 31 H 1.09004 * 109.47689 * 90.00114 * 1 2 3 32 32 H 1.09001 * 109.46806 * 209.99836 * 1 2 3 33 33 H 1.09000 * 109.47505 * 329.99678 * 1 2 3 34 34 H 1.08005 * 128.00726 * 359.96491 * 3 2 1 35 35 H 1.09003 * 109.58635 * 113.84356 * 9 8 6 36 36 H 1.08997 * 109.58923 * 353.41908 * 9 8 6 37 37 H 1.08999 * 109.49524 * 65.32125 * 10 9 8 38 38 H 1.09007 * 109.49265 * 185.38365 * 10 9 8 39 39 H 1.08999 * 109.46164 * 181.38836 * 11 10 9 40 40 H 1.09003 * 109.45725 * 301.35850 * 11 10 9 41 41 H 1.09001 * 109.47238 * 59.99861 * 14 12 11 42 42 H 1.08993 * 109.47235 * 180.02562 * 14 12 11 43 43 H 1.08998 * 109.46771 * 300.00101 * 14 12 11 44 44 H 1.09004 * 109.46586 * 46.79284 * 17 15 8 45 45 H 1.08998 * 109.46775 * 166.79147 * 17 15 8 46 46 H 0.97003 * 119.99716 * 4.84354 * 18 17 15 47 47 H 0.97000 * 120.00208 * 179.97438 * 22 21 19 48 48 H 1.08999 * 117.50133 * 214.99896 * 27 5 4 49 49 H 1.08998 * 117.50382 * 0.02647 * 27 5 4 50 50 H 1.08996 * 117.49986 * 359.97266 * 28 5 4 51 51 H 1.09001 * 117.49827 * 144.97053 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3538 1.1321 0.0000 4 6 3.6024 0.6070 0.0006 5 6 4.9021 1.3698 0.0003 6 6 4.8653 2.7161 -0.6757 7 8 5.0054 3.7274 -0.0210 8 7 4.6768 2.7964 -2.0079 9 6 4.3980 1.5898 -2.7985 10 6 5.4063 1.5103 -3.9490 11 6 5.3616 2.8122 -4.7521 12 6 5.7510 3.9846 -3.8486 13 1 5.7417 4.9083 -4.4271 14 6 7.1535 3.7499 -3.2837 15 6 4.7466 4.0921 -2.6971 16 1 3.7643 4.3517 -3.0920 17 6 5.2061 5.1715 -1.7148 18 7 4.1162 5.4831 -0.7867 19 6 4.2612 6.4950 0.1244 20 1 5.1788 7.0635 0.1586 21 6 3.2283 6.7906 1.0035 22 7 2.1099 6.0980 0.9615 23 14 3.4263 8.1705 2.2469 24 1 4.7671 8.7893 2.0904 25 1 2.3779 9.1971 2.0181 26 1 3.2909 7.6224 3.6204 27 6 5.8112 1.2170 1.2213 28 6 6.1961 0.5606 -0.1069 29 8 3.4537 -0.7251 -0.0045 30 7 2.2868 -1.0422 0.0006 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 2.0708 2.1744 -0.0005 35 1 3.3867 1.6429 -3.2019 36 1 4.4953 0.7077 -2.1656 37 1 6.4084 1.3662 -3.5451 38 1 5.1518 0.6727 -4.5985 39 1 6.0606 2.7486 -5.5861 40 1 4.3530 2.9683 -5.1347 41 1 7.8670 3.6709 -4.1039 42 1 7.4302 4.5848 -2.6400 43 1 7.1620 2.8266 -2.7045 44 1 6.0681 4.8094 -1.1544 45 1 5.4823 6.0704 -2.2659 46 1 3.2920 4.9727 -0.8177 47 1 1.3882 6.3043 1.5760 48 1 6.3828 2.0902 1.5357 49 1 5.4696 0.5644 2.0247 50 1 6.1074 -0.5235 -0.1768 51 1 7.0207 1.0018 -0.6667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715406194.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:00 Heat of formation + Delta-G solvation = 86.861703 kcal Electronic energy + Delta-G solvation = -33663.076847 eV Core-core repulsion = 29567.996673 eV Total energy + Delta-G solvation = -4095.080174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.01288 -41.87557 -39.22436 -37.74810 -36.10565 -35.79694 -34.43879 -33.64199 -32.51749 -31.81472 -29.63744 -28.61642 -27.24658 -26.28358 -25.17582 -24.33932 -24.20811 -23.49927 -22.53055 -21.75593 -20.27309 -19.56998 -19.10986 -18.66652 -18.37082 -17.50511 -16.91534 -16.77086 -16.27267 -15.99469 -15.72746 -15.52019 -15.18637 -14.97083 -14.83010 -14.59900 -14.30867 -14.24228 -14.06935 -13.93685 -13.88078 -13.78824 -13.31107 -13.29194 -12.92128 -12.83659 -12.69918 -12.57224 -12.45965 -12.33525 -12.09762 -12.03193 -11.98152 -11.83622 -11.74517 -11.60841 -11.26277 -11.17342 -11.01008 -10.83409 -10.22493 -9.93464 -9.41027 -8.61038 -7.81705 -4.99274 0.31155 1.14925 1.41580 1.44256 1.46913 1.54345 2.00678 2.22036 2.62343 2.68258 3.17402 3.25160 3.46998 3.52177 3.71793 3.76828 3.84115 3.88890 3.92560 4.10568 4.12725 4.22897 4.26365 4.39638 4.45834 4.53369 4.56326 4.59544 4.62164 4.63399 4.66473 4.79723 4.82601 4.83926 4.85827 4.91481 4.93983 4.98041 5.03521 5.10758 5.14129 5.18387 5.27079 5.31674 5.33223 5.38686 5.55344 5.58778 5.84968 6.39354 6.59958 7.16488 7.45061 7.51214 8.27063 8.49460 9.43048 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008162 B = 0.005345 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.579040 B = 5236.871327 C = 7126.474673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.025 3.975 3 C -0.234 4.234 4 C 0.027 3.973 5 C -0.103 4.103 6 C 0.522 3.478 7 O -0.488 6.488 8 N -0.594 5.594 9 C 0.109 3.891 10 C -0.127 4.127 11 C -0.107 4.107 12 C -0.093 4.093 13 H 0.083 0.917 14 C -0.139 4.139 15 C 0.151 3.849 16 H 0.053 0.947 17 C 0.167 3.833 18 N -0.702 5.702 19 C -0.204 4.204 20 H 0.061 0.939 21 C -0.083 4.083 22 N -0.970 5.970 23 Si 0.961 3.039 24 H -0.271 1.271 25 H -0.295 1.295 26 H -0.301 1.301 27 C -0.136 4.136 28 C -0.112 4.112 29 O 0.101 5.899 30 N -0.380 5.380 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.055 0.945 44 H 0.029 0.971 45 H 0.011 0.989 46 H 0.366 0.634 47 H 0.242 0.758 48 H 0.099 0.901 49 H 0.114 0.886 50 H 0.135 0.865 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -17.132 -11.784 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.134 4.134 3 C -0.256 4.256 4 C -0.037 4.037 5 C -0.108 4.108 6 C 0.306 3.694 7 O -0.359 6.359 8 N -0.330 5.330 9 C -0.013 4.013 10 C -0.165 4.165 11 C -0.145 4.145 12 C -0.113 4.113 13 H 0.102 0.898 14 C -0.196 4.196 15 C 0.048 3.952 16 H 0.071 0.929 17 C 0.041 3.959 18 N -0.342 5.342 19 C -0.337 4.337 20 H 0.079 0.921 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.792 3.208 24 H -0.196 1.196 25 H -0.222 1.222 26 H -0.229 1.229 27 C -0.174 4.174 28 C -0.149 4.149 29 O 0.037 5.963 30 N -0.088 5.088 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.029 0.971 46 H 0.198 0.802 47 H 0.051 0.949 48 H 0.118 0.882 49 H 0.132 0.868 50 H 0.153 0.847 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.309 -17.735 -11.347 22.287 hybrid contribution -0.970 1.922 1.256 2.493 sum 6.339 -15.813 -10.090 19.800 Atomic orbital electron populations 1.20309 0.83893 1.04496 1.04644 1.23932 1.00354 0.87798 1.01289 1.22355 0.92182 1.00868 1.10156 1.22876 0.95617 0.83346 1.01856 1.19487 0.88052 0.94856 1.08430 1.19379 0.79208 0.88310 0.82477 1.91239 1.45680 1.34288 1.64715 1.47764 1.71300 1.08053 1.05865 1.21827 0.99068 0.86533 0.93880 1.21943 0.99660 0.98606 0.96328 1.21520 1.02188 0.93154 0.97625 1.21446 0.94688 1.00367 0.94796 0.89823 1.21805 0.95502 1.01304 1.01015 1.21378 0.98623 0.82503 0.92709 0.92886 1.20913 0.92115 0.93459 0.89457 1.42295 1.15041 1.38234 1.38645 1.19473 0.98324 1.06653 1.09273 0.92086 1.25284 0.96881 1.02808 1.02437 1.69813 1.06135 1.44793 1.41637 0.85217 0.77162 0.79328 0.79073 1.19600 1.22216 1.22922 1.23178 0.99065 1.03334 0.91789 1.23339 0.92745 1.00482 0.98352 1.84736 1.21665 1.21668 1.68237 1.73778 0.89359 1.23862 1.21770 0.88498 0.89291 0.89785 0.83615 0.92542 0.89903 0.90312 0.88720 0.89338 0.91982 0.90648 0.94421 0.92562 0.95365 0.97102 0.80225 0.94884 0.88235 0.86789 0.84738 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.47 71.23 0.75 -0.92 16 2 C 0.02 0.71 7.33 43.58 0.32 1.03 16 3 C -0.23 -7.82 10.59 22.40 0.24 -7.58 16 4 C 0.03 0.79 4.99 25.04 0.13 0.92 16 5 C -0.10 -2.97 1.33 -53.68 -0.07 -3.04 16 6 C 0.52 18.62 6.21 87.66 0.54 19.17 16 7 O -0.49 -23.10 10.46 -3.05 -0.03 -23.13 16 8 N -0.59 -17.75 2.41 -795.03 -1.92 -19.66 16 9 C 0.11 2.42 6.01 86.36 0.52 2.94 16 10 C -0.13 -1.97 5.74 30.67 0.18 -1.79 16 11 C -0.11 -1.77 5.43 30.62 0.17 -1.60 16 12 C -0.09 -2.12 2.77 -10.72 -0.03 -2.15 16 13 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.14 -3.00 8.23 71.98 0.59 -2.41 16 15 C 0.15 4.89 2.61 44.97 0.12 5.01 16 16 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 17 C 0.17 7.11 3.94 86.38 0.34 7.45 16 18 N -0.70 -37.88 3.20 -343.45 -1.10 -38.98 16 19 C -0.20 -12.25 9.72 84.03 0.82 -11.43 16 20 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 21 C -0.08 -5.10 5.50 84.86 0.47 -4.64 16 22 N -0.97 -62.64 13.06 21.65 0.28 -62.36 16 23 Si 0.96 49.77 29.55 68.60 2.03 51.79 16 24 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 26 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 27 C -0.14 -3.53 9.76 30.62 0.30 -3.23 16 28 C -0.11 -2.18 9.52 30.62 0.29 -1.89 16 29 O 0.10 2.79 10.97 71.67 0.79 3.57 16 30 N -0.38 -11.10 12.07 -49.57 -0.60 -11.70 16 31 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.15 5.86 8.06 -2.91 -0.02 5.84 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.78 4.98 -2.39 -0.01 1.77 16 37 H 0.08 1.15 6.34 -2.39 -0.02 1.13 16 38 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.04 0.98 6.66 -2.39 -0.02 0.97 16 43 H 0.06 1.21 5.97 -2.39 -0.01 1.19 16 44 H 0.03 1.29 5.35 -2.38 -0.01 1.28 16 45 H 0.01 0.48 8.09 -2.39 -0.02 0.46 16 46 H 0.37 21.34 7.25 -92.71 -0.67 20.67 16 47 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.10 2.94 8.02 -2.39 -0.02 2.92 16 49 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 50 H 0.13 1.95 8.00 -2.39 -0.02 1.93 16 51 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -76.45 395.75 5.38 -71.07 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.27 Total: 33.56 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.66 Total: -4.17 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -3.33 Total: -132.70 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.75 Total: -19.56 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.03 Total: 51.79 kcal Total: -76.45 5.38 -71.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715406194.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.933 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds