Wall clock time and date at job start Wed Apr 1 2020 04:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30014 * 127.33369 * 2 1 4 4 O 1.20657 * 112.29769 * 180.27122 * 3 2 1 5 5 C 1.33490 * 113.15940 * 359.72809 * 4 3 2 6 6 C 1.50700 * 126.83110 * 179.97438 * 5 4 3 7 7 C 1.37358 * 106.33854 * 0.02562 * 5 4 3 8 8 C 1.47409 * 128.56141 * 179.97438 * 7 5 4 9 9 O 1.21601 * 119.99929 * 90.00053 * 8 7 5 10 10 N 1.34772 * 119.99759 * 269.99773 * 8 7 5 11 11 C 1.46927 * 120.62863 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89261 * 233.55549 * 11 10 8 13 13 C 1.53073 * 109.29843 * 305.58040 * 12 11 10 14 14 N 1.46499 * 109.45134 * 181.24501 * 13 12 11 15 15 C 1.36941 * 119.99750 * 299.78104 * 14 13 12 16 16 H 1.07996 * 120.00208 * 15.96900 * 15 14 13 17 17 C 1.38809 * 119.99831 * 195.96498 * 15 14 13 18 18 N 1.31614 * 120.00433 * 21.39865 * 17 15 14 19 19 Si 1.86804 * 119.99775 * 201.40175 * 17 15 14 20 20 H 1.48504 * 109.47083 * 60.00326 * 19 17 15 21 21 H 1.48503 * 109.47022 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47366 * 300.00054 * 19 17 15 23 23 C 1.46501 * 120.00119 * 119.79390 * 14 13 12 24 24 C 1.52994 * 109.47434 * 84.10567 * 23 14 13 25 25 C 1.53005 * 117.49779 * 243.62150 * 24 23 14 26 26 C 1.52996 * 59.99983 * 252.50886 * 25 24 23 27 27 C 1.53039 * 109.65642 * 61.15042 * 13 12 11 28 28 C 1.46928 * 120.63148 * 0.02562 * 10 8 7 29 29 H 1.08998 * 109.47032 * 270.15244 * 1 2 3 30 30 H 1.09007 * 109.47032 * 30.15203 * 1 2 3 31 31 H 1.09001 * 109.46809 * 150.15211 * 1 2 3 32 32 H 1.09001 * 109.47186 * 270.00029 * 6 5 4 33 33 H 1.09001 * 109.47088 * 30.00368 * 6 5 4 34 34 H 1.08994 * 109.47234 * 150.00233 * 6 5 4 35 35 H 1.08997 * 109.58840 * 353.42209 * 11 10 8 36 36 H 1.09008 * 109.58350 * 113.70212 * 11 10 8 37 37 H 1.08997 * 109.49342 * 65.38849 * 12 11 10 38 38 H 1.09004 * 109.49881 * 185.48417 * 12 11 10 39 39 H 1.09004 * 109.34295 * 301.13031 * 13 12 11 40 40 H 0.96999 * 120.00283 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.46680 * 204.10736 * 23 14 13 42 42 H 1.08996 * 109.46709 * 324.10367 * 23 14 13 43 43 H 1.09006 * 115.55410 * 29.32745 * 24 23 14 44 44 H 1.09000 * 117.49684 * 0.02562 * 25 24 23 45 45 H 1.09004 * 117.49797 * 145.02044 * 25 24 23 46 46 H 1.08998 * 117.50041 * 252.50918 * 26 25 24 47 47 H 1.09006 * 117.49652 * 107.48531 * 26 25 24 48 48 H 1.09007 * 109.49338 * 178.75003 * 27 13 12 49 49 H 1.09000 * 109.49604 * 58.65410 * 27 13 12 50 50 H 1.08997 * 109.58630 * 246.15575 * 28 10 8 51 51 H 1.08991 * 109.58679 * 6.44339 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7208 -0.0053 5 6 3.6495 -0.6007 -0.0040 6 6 4.9712 -1.3246 -0.0099 7 6 2.3992 -1.1695 0.0027 8 6 2.0401 -2.5992 0.0061 9 8 1.8970 -3.1876 1.0607 10 7 1.8704 -3.2542 -1.1594 11 6 1.5119 -4.6790 -1.1722 12 6 2.5199 -5.4364 -2.0422 13 6 2.5803 -4.7880 -3.4275 14 7 3.5214 -5.5278 -4.2719 15 6 4.8358 -5.6334 -3.9023 16 1 5.1316 -5.4066 -2.8887 17 6 5.7879 -6.0320 -4.8304 18 7 5.5454 -5.9055 -6.1178 19 14 7.4133 -6.7483 -4.2521 20 1 7.1579 -7.9728 -3.4517 21 1 8.2493 -7.0930 -5.4301 22 1 8.1247 -5.7491 -3.4150 23 6 3.0566 -6.1545 -5.5118 24 6 3.0574 -5.1190 -6.6381 25 6 1.7099 -4.7570 -7.2659 26 6 2.7138 -5.6072 -8.0468 27 6 3.0455 -3.3359 -3.2964 28 6 2.0404 -2.5570 -2.4416 29 1 -0.3633 0.0027 1.0276 30 1 -0.3633 0.8887 -0.5162 31 1 -0.3633 -0.8914 -0.5115 32 1 5.2843 -1.5010 -1.0389 33 1 5.7201 -0.7177 0.4989 34 1 4.8652 -2.2788 0.5062 35 1 1.5387 -5.0716 -0.1557 36 1 0.5100 -4.8000 -1.5843 37 1 3.5056 -5.3924 -1.5789 38 1 2.2085 -6.4765 -2.1381 39 1 1.5893 -4.8122 -3.8810 40 1 6.2109 -6.1837 -6.7663 41 1 3.7213 -6.9774 -5.7743 42 1 2.0454 -6.5356 -5.3693 43 1 3.7999 -4.3262 -6.5474 44 1 0.8227 -5.2562 -6.8761 45 1 1.5656 -3.7257 -7.5881 46 1 3.2301 -5.1354 -8.8829 47 1 2.4873 -6.6662 -8.1712 48 1 3.1088 -2.8835 -4.2861 49 1 4.0257 -3.3095 -2.8204 50 1 1.0826 -2.5055 -2.9593 51 1 2.4136 -1.5487 -2.2625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716714284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:37 Heat of formation + Delta-G solvation = 76.412701 kcal Electronic energy + Delta-G solvation = -32339.024859 eV Core-core repulsion = 28243.491582 eV Total energy + Delta-G solvation = -4095.533277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.95476 -39.97788 -37.73784 -36.45201 -34.76187 -34.50819 -33.67876 -32.11989 -30.81078 -29.89942 -28.93513 -28.08288 -26.23615 -25.39386 -24.04017 -22.78985 -22.03358 -21.52202 -20.61500 -20.03885 -19.42236 -18.91885 -17.98359 -17.56124 -16.63489 -16.23692 -15.84031 -15.34071 -15.01578 -14.42214 -14.24680 -13.91234 -13.76800 -13.70666 -13.65389 -13.54056 -13.37598 -13.27356 -13.02837 -12.94016 -12.82915 -12.53934 -12.18004 -12.03342 -11.66626 -11.33386 -11.21208 -10.93626 -10.89352 -10.80914 -10.68776 -10.66535 -10.36047 -10.16943 -10.05911 -9.98201 -9.90830 -9.72110 -9.38157 -9.19664 -8.81312 -8.52778 -8.37256 -6.87463 -5.78756 -3.15823 1.23333 1.80564 2.41110 2.72785 3.17327 3.35382 3.43039 3.45085 3.95074 4.13862 4.44198 4.55718 4.82849 4.88810 5.07295 5.08416 5.12917 5.25067 5.25924 5.29946 5.33317 5.39760 5.42178 5.46999 5.54285 5.61980 5.67081 5.77203 5.80497 5.85670 5.91065 5.94584 5.99693 6.03118 6.19052 6.29378 6.31824 6.40972 6.53528 6.54990 6.66123 6.69205 6.87143 6.95715 6.98252 7.25060 7.41737 7.46998 7.71051 7.80007 8.11725 8.12310 8.32967 9.18918 9.83080 10.29554 11.25376 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.003489 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.416282 B = 8022.195609 C = 8878.652058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.052 3.948 3 N -0.358 5.358 4 O 0.094 5.906 5 C 0.022 3.978 6 C -0.082 4.082 7 C -0.245 4.245 8 C 0.599 3.401 9 O -0.536 6.536 10 N -0.591 5.591 11 C 0.113 3.887 12 C -0.141 4.141 13 C 0.182 3.818 14 N -0.588 5.588 15 C -0.251 4.251 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.286 1.286 23 C 0.206 3.794 24 C -0.079 4.079 25 C -0.225 4.225 26 C -0.184 4.184 27 C -0.136 4.136 28 C 0.109 3.891 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.252 0.748 41 H 0.081 0.919 42 H 0.008 0.992 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 7.959 6.612 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 N -0.065 5.065 4 O 0.033 5.967 5 C -0.042 4.042 6 C -0.139 4.139 7 C -0.252 4.252 8 C 0.385 3.615 9 O -0.414 6.414 10 N -0.323 5.323 11 C -0.009 4.009 12 C -0.181 4.181 13 C 0.073 3.927 14 N -0.307 5.307 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.536 5.536 19 Si 0.722 3.278 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.213 1.213 23 C 0.080 3.920 24 C -0.100 4.100 25 C -0.262 4.262 26 C -0.221 4.221 27 C -0.176 4.176 28 C -0.014 4.014 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.026 0.974 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.085 0.915 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.174 8.872 7.004 13.949 hybrid contribution 0.922 -1.000 -0.079 1.362 sum -7.252 7.872 6.925 12.748 Atomic orbital electron populations 1.20198 0.85294 1.04018 1.03781 1.24709 0.98485 0.86591 1.01219 1.73595 0.89193 1.23391 1.20344 1.84519 1.21416 1.22698 1.68088 1.24658 0.97532 0.83521 0.98449 1.20522 0.88794 0.99317 1.05257 1.21863 0.92839 0.95383 1.15158 1.16902 0.76945 0.83891 0.83759 1.90790 1.51596 1.68054 1.30942 1.48092 1.67426 1.11172 1.05617 1.21753 0.98311 0.78883 1.01940 1.22404 0.99065 0.99266 0.97357 1.20194 0.92984 0.89334 0.90145 1.44131 1.05511 1.58896 1.22154 1.19012 0.83246 1.41385 0.94411 0.91291 1.24762 0.97319 1.02150 0.95199 1.70160 1.34722 1.49251 0.99417 0.86539 0.84063 0.79718 0.77462 1.21341 1.21862 1.21259 1.20264 0.94196 0.93974 0.83527 1.23014 0.92615 1.01851 0.92502 1.23106 0.95302 0.99098 1.08724 1.22597 1.03879 0.98249 0.97418 1.22383 0.98449 0.97618 0.99147 1.21885 1.00284 0.95860 0.83414 0.89737 0.89961 0.89918 0.88114 0.89161 0.88647 0.89469 0.91672 0.91289 0.90989 0.92901 0.93766 0.90104 0.97354 0.87204 0.90638 0.90936 0.90689 0.90545 0.90881 0.91222 0.91535 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.49 36.01 0.38 -0.34 16 2 C 0.05 0.67 7.59 -79.77 -0.61 0.06 16 3 N -0.36 -4.86 12.01 34.78 0.42 -4.44 16 4 O 0.09 1.22 11.06 18.66 0.21 1.42 16 5 C 0.02 0.27 7.45 -34.63 -0.26 0.01 16 6 C -0.08 -0.81 10.33 36.01 0.37 -0.43 16 7 C -0.25 -3.34 4.22 -102.89 -0.43 -3.78 16 8 C 0.60 9.04 7.49 -12.53 -0.09 8.95 16 9 O -0.54 -9.68 16.52 5.28 0.09 -9.59 16 10 N -0.59 -8.23 2.97 -174.02 -0.52 -8.75 16 11 C 0.11 1.57 6.43 -3.71 -0.02 1.54 16 12 C -0.14 -2.25 5.32 -26.59 -0.14 -2.39 16 13 C 0.18 3.15 2.59 -67.87 -0.18 2.97 16 14 N -0.59 -12.53 2.47 -165.60 -0.41 -12.94 16 15 C -0.25 -6.01 8.42 -15.06 -0.13 -6.14 16 16 H 0.07 1.66 6.91 -52.49 -0.36 1.29 16 17 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 18 N -0.89 -22.89 9.05 55.49 0.50 -22.39 16 19 Si 0.89 20.38 29.60 -169.99 -5.03 15.35 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.21 4.41 5.09 -4.04 -0.02 4.39 16 24 C -0.08 -1.62 4.45 -90.62 -0.40 -2.02 16 25 C -0.22 -3.89 10.18 -26.73 -0.27 -4.16 16 26 C -0.18 -3.39 10.25 -26.73 -0.27 -3.67 16 27 C -0.14 -2.17 5.31 -26.59 -0.14 -2.31 16 28 C 0.11 1.42 6.34 -3.69 -0.02 1.40 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 36 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.07 1.24 7.08 -51.93 -0.37 0.87 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 40 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 41 H 0.08 1.98 6.31 -51.93 -0.33 1.65 16 42 H 0.01 0.17 7.78 -51.93 -0.40 -0.24 16 43 H 0.11 2.62 7.49 -51.93 -0.39 2.23 16 44 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.07 1.23 7.67 -51.93 -0.40 0.84 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.91 6.25 -51.93 -0.32 0.59 16 LS Contribution 408.37 15.07 6.15 6.15 Total: -1.00 -27.78 408.37 -9.31 -37.09 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.39 Total: 4.00 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.33 Total: -5.90 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.01 Total: -48.52 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.29 Total: -8.17 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -27.78 -9.31 -37.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716714284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.507 kcal (2) G-P(sol) polarization free energy of solvation -27.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds