Wall clock time and date at job start Wed Apr 1 2020 04:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30018 * 127.33452 * 2 1 4 4 O 1.20656 * 112.30079 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.16149 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.83172 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.50022 * 8.77001 * 6 5 4 8 8 C 1.52998 * 117.49894 * 300.10820 * 6 5 4 9 9 C 1.37369 * 106.33731 * 359.73723 * 5 4 3 10 10 C 1.47391 * 128.56391 * 180.26253 * 9 5 4 11 11 O 1.21610 * 119.99577 * 270.15558 * 10 9 5 12 12 N 1.34775 * 120.00470 * 90.15939 * 10 9 5 13 13 C 1.46495 * 120.00217 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47272 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.45975 * 60.02495 * 14 13 12 16 16 C 1.53045 * 109.45799 * 300.06882 * 14 13 12 17 17 C 1.53192 * 109.31198 * 178.61240 * 16 14 13 18 18 N 1.46931 * 108.77672 * 54.63542 * 17 16 14 19 19 C 1.36931 * 120.62961 * 126.41249 * 18 17 16 20 20 H 1.07999 * 119.99640 * 207.66827 * 19 18 17 21 21 C 1.38810 * 120.00294 * 27.66074 * 19 18 17 22 22 N 1.31625 * 120.00074 * 17.37068 * 21 19 18 23 23 Si 1.86804 * 120.00347 * 197.36729 * 21 19 18 24 24 H 1.48502 * 109.47030 * 90.00127 * 23 21 19 25 25 H 1.48492 * 109.47253 * 210.00411 * 23 21 19 26 26 H 1.48502 * 109.46852 * 330.00172 * 23 21 19 27 27 C 1.46921 * 118.73673 * 306.39299 * 18 17 16 28 28 C 1.53032 * 109.46445 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.46977 * 90.01779 * 1 2 3 30 30 H 1.08998 * 109.46683 * 210.01982 * 1 2 3 31 31 H 1.09004 * 109.46917 * 330.01777 * 1 2 3 32 32 H 1.09002 * 115.54637 * 154.44265 * 6 5 4 33 33 H 1.09002 * 117.49770 * 359.97438 * 7 6 5 34 34 H 1.08994 * 117.49994 * 145.02501 * 7 6 5 35 35 H 1.09001 * 117.50122 * 214.98364 * 8 6 5 36 36 H 1.09003 * 117.49890 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99689 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.47352 * 299.99987 * 13 12 10 39 39 H 1.09000 * 109.47347 * 60.00346 * 13 12 10 40 40 H 1.09000 * 109.47254 * 60.00673 * 15 14 13 41 41 H 1.09003 * 109.47287 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.47101 * 300.00110 * 15 14 13 43 43 H 1.08997 * 109.49475 * 298.56563 * 16 14 13 44 44 H 1.09003 * 109.49726 * 58.66086 * 16 14 13 45 45 H 1.09001 * 109.58847 * 294.84795 * 17 16 14 46 46 H 1.09003 * 109.58789 * 174.42567 * 17 16 14 47 47 H 0.96996 * 120.00454 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58806 * 293.81827 * 27 18 17 49 49 H 1.08998 * 109.70110 * 173.46552 * 27 18 17 50 50 H 1.09008 * 109.49598 * 301.33730 * 28 14 13 51 51 H 1.08995 * 109.50151 * 61.42902 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0004 6 6 4.9713 -1.3245 0.0003 7 6 6.2351 -0.4874 0.2074 8 6 5.9179 -1.0665 -1.1736 9 6 2.3992 -1.1696 0.0057 10 6 2.0401 -2.5991 0.0132 11 8 1.8925 -3.1944 -1.0370 12 7 1.8754 -3.2466 1.1837 13 6 1.5180 -4.6672 1.1910 14 6 1.3925 -5.1541 2.6360 15 6 0.3044 -4.3512 3.3518 16 6 2.7279 -4.9587 3.3577 17 6 2.5886 -5.4150 4.8134 18 7 2.0902 -6.7971 4.8302 19 6 2.7589 -7.7714 5.5220 20 1 2.6923 -8.8015 5.2043 21 6 3.5225 -7.4353 6.6313 22 7 3.3451 -6.2740 7.2251 23 14 4.8019 -8.6310 7.2818 24 1 6.1043 -8.3725 6.6168 25 1 4.9499 -8.4483 8.7480 26 1 4.3685 -10.0226 6.9976 27 6 0.8606 -7.1136 4.0911 28 6 1.0198 -6.6383 2.6435 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3632 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5136 32 1 4.9574 -2.3285 0.4245 33 1 6.1106 0.5869 0.3432 34 1 7.0529 -0.9408 0.7674 35 1 6.5272 -1.9007 -1.5216 36 1 5.5844 -0.3736 -1.9462 37 1 1.9934 -2.7718 2.0213 38 1 0.5664 -4.8052 0.6776 39 1 2.2926 -5.2394 0.6805 40 1 -0.6468 -4.4897 2.8378 41 1 0.2151 -4.6976 4.3814 42 1 0.5699 -3.2941 3.3462 43 1 3.4985 -5.5500 2.8632 44 1 3.0046 -3.9047 3.3317 45 1 1.8841 -4.7662 5.3339 46 1 3.5606 -5.3710 5.3048 47 1 3.8784 -6.0392 8.0005 48 1 0.0151 -6.6034 4.5527 49 1 0.6899 -8.1901 4.1056 50 1 0.0804 -6.7802 2.1089 51 1 1.8067 -7.2136 2.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716886320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:57 Heat of formation + Delta-G solvation = 61.892060 kcal Electronic energy + Delta-G solvation = -31519.943581 eV Core-core repulsion = 27423.780642 eV Total energy + Delta-G solvation = -4096.162939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.10084 -39.93984 -38.48291 -37.71476 -35.11872 -34.79141 -33.19786 -31.96199 -30.87731 -29.97612 -29.06064 -27.25035 -27.01756 -24.92395 -23.94364 -23.57767 -22.77965 -22.35390 -20.98004 -20.59878 -19.76333 -18.34751 -18.00481 -17.85246 -16.85295 -16.45358 -16.18005 -15.91929 -15.09656 -14.91590 -14.62480 -14.23545 -14.01203 -13.73289 -13.64604 -13.57373 -13.50708 -13.47074 -13.19261 -12.86683 -12.66619 -12.39512 -12.06018 -11.96247 -11.71686 -11.52090 -11.45599 -11.34026 -11.22333 -10.82729 -10.80966 -10.75138 -10.61798 -10.35282 -10.22686 -10.19021 -10.10008 -9.84686 -9.56869 -9.46846 -9.41440 -9.08235 -8.47668 -6.69028 -5.81898 -3.23477 1.01110 1.67551 2.29887 2.51781 3.19202 3.35468 3.39609 3.42955 3.43715 3.82419 3.92708 4.32603 4.45181 4.47241 4.49957 4.69419 4.95872 4.99214 5.10785 5.13308 5.17773 5.19283 5.26139 5.29297 5.35056 5.37506 5.47986 5.50948 5.61654 5.70617 5.71146 5.75149 5.78787 5.88228 6.04043 6.04816 6.09121 6.26256 6.34265 6.44039 6.48709 6.55838 6.64199 6.73755 6.83079 6.95993 7.31760 7.40129 7.62850 7.77296 7.97810 8.05807 8.42209 9.18912 9.82453 10.38807 11.26456 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.002781 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.022753 B =10065.169376 C =11159.839718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.056 3.944 3 N -0.355 5.355 4 O 0.096 5.904 5 C 0.053 3.947 6 C -0.096 4.096 7 C -0.160 4.160 8 C -0.156 4.156 9 C -0.244 4.244 10 C 0.597 3.403 11 O -0.529 6.529 12 N -0.709 5.709 13 C 0.129 3.871 14 C -0.064 4.064 15 C -0.143 4.143 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.146 3.854 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.404 0.596 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.021 0.979 46 H 0.086 0.914 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.053 0.947 50 H 0.052 0.948 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 12.514 -14.375 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.062 5.062 4 O 0.035 5.965 5 C -0.010 4.010 6 C -0.115 4.115 7 C -0.197 4.197 8 C -0.193 4.193 9 C -0.252 4.252 10 C 0.381 3.619 11 O -0.405 6.405 12 N -0.360 5.360 13 C 0.006 3.994 14 C -0.064 4.064 15 C -0.200 4.200 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.019 3.981 28 C -0.159 4.159 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.240 0.760 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.039 0.961 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.956 13.425 -14.952 20.117 hybrid contribution 0.604 -1.094 0.792 1.480 sum -0.352 12.331 -14.160 18.780 Atomic orbital electron populations 1.20232 0.85056 1.04250 1.03952 1.24738 0.98580 0.86453 1.00858 1.73623 0.89016 1.23216 1.20361 1.84497 1.21554 1.22365 1.68116 1.23539 0.95540 0.83430 0.98520 1.20543 0.84036 0.99626 1.07274 1.23130 0.96825 1.00282 0.99483 1.23131 1.00567 1.03912 0.91664 1.21852 0.92475 0.95461 1.15374 1.16834 0.77128 0.83783 0.84169 1.90820 1.50460 1.67582 1.31678 1.46100 1.69766 1.12121 1.08041 1.21632 1.00510 0.79322 0.97967 1.20703 0.97155 0.96420 0.92148 1.21946 0.97296 0.98569 1.02160 1.22260 0.94921 0.99016 1.00737 1.20790 1.00394 0.84581 0.89671 1.44033 1.23920 1.06231 1.57212 1.19202 1.23913 0.89484 1.05506 0.91709 1.25013 1.01476 0.97315 0.95814 1.70028 1.40864 1.22640 1.21219 0.86309 0.82062 0.80740 0.77784 1.21497 1.21801 1.20454 1.20908 0.89612 0.98019 0.89519 1.21996 1.00140 0.93749 1.00044 0.89580 0.89713 0.89817 0.84160 0.87591 0.87133 0.87152 0.88055 0.75977 0.91608 0.91392 0.93327 0.90645 0.93753 0.92486 0.93751 0.96113 0.89622 0.93686 0.96159 0.92891 0.92894 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.01 0.38 -0.31 16 2 C 0.06 0.66 7.59 -79.76 -0.61 0.06 16 3 N -0.36 -4.49 12.01 34.78 0.42 -4.07 16 4 O 0.10 1.14 10.86 18.65 0.20 1.34 16 5 C 0.05 0.60 7.00 -34.63 -0.24 0.36 16 6 C -0.10 -0.88 6.14 -91.77 -0.56 -1.44 16 7 C -0.16 -1.13 10.19 -26.69 -0.27 -1.40 16 8 C -0.16 -1.16 10.24 -26.69 -0.27 -1.43 16 9 C -0.24 -3.06 6.24 -102.89 -0.64 -3.70 16 10 C 0.60 8.21 7.63 -12.54 -0.10 8.11 16 11 O -0.53 -9.03 17.11 5.27 0.09 -8.94 16 12 N -0.71 -8.78 4.94 -61.40 -0.30 -9.09 16 13 C 0.13 1.72 4.56 -4.04 -0.02 1.70 16 14 C -0.06 -0.93 0.53 -154.47 -0.08 -1.02 16 15 C -0.14 -1.99 7.54 37.16 0.28 -1.71 16 16 C -0.13 -2.22 4.75 -26.61 -0.13 -2.34 16 17 C 0.17 3.78 4.84 -3.71 -0.02 3.76 16 18 N -0.59 -13.98 2.99 -172.32 -0.52 -14.50 16 19 C -0.25 -6.67 9.59 -15.06 -0.14 -6.82 16 20 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -25.38 11.19 55.49 0.62 -24.76 16 23 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.15 2.86 6.05 -3.71 -0.02 2.83 16 28 C -0.12 -1.90 4.90 -26.61 -0.13 -2.03 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.11 0.72 8.02 -51.93 -0.42 0.30 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 4.63 6.14 -40.82 -0.25 4.38 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.25 4.98 -51.93 -0.26 0.99 16 42 H 0.04 0.55 6.86 -51.93 -0.36 0.20 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.04 0.67 6.82 -51.93 -0.35 0.31 16 45 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 46 H 0.09 2.18 6.04 -51.93 -0.31 1.86 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 49 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 50 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -31.05 405.43 -9.17 -40.22 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.10 Total: 2.89 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.66 Total: -5.40 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.22 Total: -52.41 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.29 Total: -7.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.05 -9.17 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716886320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.113 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds