Wall clock time and date at job start Wed Apr 1 2020 04:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30018 * 127.33452 * 2 1 4 4 O 1.20656 * 112.30079 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.16149 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.83172 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.50022 * 8.77001 * 6 5 4 8 8 C 1.52998 * 117.49894 * 300.10820 * 6 5 4 9 9 C 1.37369 * 106.33731 * 359.73723 * 5 4 3 10 10 C 1.47391 * 128.56391 * 180.26253 * 9 5 4 11 11 O 1.21610 * 119.99577 * 270.15558 * 10 9 5 12 12 N 1.34775 * 120.00470 * 90.15939 * 10 9 5 13 13 C 1.46495 * 120.00217 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47272 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.45975 * 60.02495 * 14 13 12 16 16 C 1.53045 * 109.45799 * 300.06882 * 14 13 12 17 17 C 1.53192 * 109.31198 * 178.61240 * 16 14 13 18 18 N 1.46931 * 108.77672 * 54.63542 * 17 16 14 19 19 C 1.36931 * 120.62961 * 126.41249 * 18 17 16 20 20 H 1.07999 * 119.99640 * 207.66827 * 19 18 17 21 21 C 1.38810 * 120.00294 * 27.66074 * 19 18 17 22 22 N 1.31625 * 120.00074 * 17.37068 * 21 19 18 23 23 Si 1.86804 * 120.00347 * 197.36729 * 21 19 18 24 24 H 1.48502 * 109.47030 * 90.00127 * 23 21 19 25 25 H 1.48492 * 109.47253 * 210.00411 * 23 21 19 26 26 H 1.48502 * 109.46852 * 330.00172 * 23 21 19 27 27 C 1.46921 * 118.73673 * 306.39299 * 18 17 16 28 28 C 1.53032 * 109.46445 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.46977 * 90.01779 * 1 2 3 30 30 H 1.08998 * 109.46683 * 210.01982 * 1 2 3 31 31 H 1.09004 * 109.46917 * 330.01777 * 1 2 3 32 32 H 1.09002 * 115.54637 * 154.44265 * 6 5 4 33 33 H 1.09002 * 117.49770 * 359.97438 * 7 6 5 34 34 H 1.08994 * 117.49994 * 145.02501 * 7 6 5 35 35 H 1.09001 * 117.50122 * 214.98364 * 8 6 5 36 36 H 1.09003 * 117.49890 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99689 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.47352 * 299.99987 * 13 12 10 39 39 H 1.09000 * 109.47347 * 60.00346 * 13 12 10 40 40 H 1.09000 * 109.47254 * 60.00673 * 15 14 13 41 41 H 1.09003 * 109.47287 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.47101 * 300.00110 * 15 14 13 43 43 H 1.08997 * 109.49475 * 298.56563 * 16 14 13 44 44 H 1.09003 * 109.49726 * 58.66086 * 16 14 13 45 45 H 1.09001 * 109.58847 * 294.84795 * 17 16 14 46 46 H 1.09003 * 109.58789 * 174.42567 * 17 16 14 47 47 H 0.96996 * 120.00454 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58806 * 293.81827 * 27 18 17 49 49 H 1.08998 * 109.70110 * 173.46552 * 27 18 17 50 50 H 1.09008 * 109.49598 * 301.33730 * 28 14 13 51 51 H 1.08995 * 109.50151 * 61.42902 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0004 6 6 4.9713 -1.3245 0.0003 7 6 6.2351 -0.4874 0.2074 8 6 5.9179 -1.0665 -1.1736 9 6 2.3992 -1.1696 0.0057 10 6 2.0401 -2.5991 0.0132 11 8 1.8925 -3.1944 -1.0370 12 7 1.8754 -3.2466 1.1837 13 6 1.5180 -4.6672 1.1910 14 6 1.3925 -5.1541 2.6360 15 6 0.3044 -4.3512 3.3518 16 6 2.7279 -4.9587 3.3577 17 6 2.5886 -5.4150 4.8134 18 7 2.0902 -6.7971 4.8302 19 6 2.7589 -7.7714 5.5220 20 1 2.6923 -8.8015 5.2043 21 6 3.5225 -7.4353 6.6313 22 7 3.3451 -6.2740 7.2251 23 14 4.8019 -8.6310 7.2818 24 1 6.1043 -8.3725 6.6168 25 1 4.9499 -8.4483 8.7480 26 1 4.3685 -10.0226 6.9976 27 6 0.8606 -7.1136 4.0911 28 6 1.0198 -6.6383 2.6435 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3632 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5136 32 1 4.9574 -2.3285 0.4245 33 1 6.1106 0.5869 0.3432 34 1 7.0529 -0.9408 0.7674 35 1 6.5272 -1.9007 -1.5216 36 1 5.5844 -0.3736 -1.9462 37 1 1.9934 -2.7718 2.0213 38 1 0.5664 -4.8052 0.6776 39 1 2.2926 -5.2394 0.6805 40 1 -0.6468 -4.4897 2.8378 41 1 0.2151 -4.6976 4.3814 42 1 0.5699 -3.2941 3.3462 43 1 3.4985 -5.5500 2.8632 44 1 3.0046 -3.9047 3.3317 45 1 1.8841 -4.7662 5.3339 46 1 3.5606 -5.3710 5.3048 47 1 3.8784 -6.0392 8.0005 48 1 0.0151 -6.6034 4.5527 49 1 0.6899 -8.1901 4.1056 50 1 0.0804 -6.7802 2.1089 51 1 1.8067 -7.2136 2.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716886320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:55 Heat of formation + Delta-G solvation = 44.886869 kcal Electronic energy + Delta-G solvation = -31520.680981 eV Core-core repulsion = 27423.780642 eV Total energy + Delta-G solvation = -4096.900339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.99186 -41.11621 -39.82270 -38.37159 -36.61834 -35.67230 -34.67520 -32.99945 -32.45871 -31.56310 -29.83253 -28.77025 -28.14354 -26.30008 -25.11527 -24.56496 -23.87498 -23.34327 -22.46361 -21.71848 -20.61461 -19.66807 -19.18688 -18.81266 -18.18082 -17.63897 -17.13122 -16.94925 -16.78210 -16.13391 -15.80821 -15.49202 -15.39454 -15.02576 -15.00976 -14.70029 -14.46261 -14.37031 -14.31746 -14.05341 -13.94129 -13.43805 -13.16624 -13.08235 -12.94873 -12.67108 -12.56514 -12.55702 -12.45523 -12.32636 -12.25195 -12.18389 -11.88560 -11.79049 -11.49732 -11.46449 -11.42326 -11.06612 -11.03166 -11.00434 -10.47765 -10.26208 -10.17813 -8.61776 -7.84829 -5.28320 0.14106 0.78583 1.25247 1.46973 1.48723 1.56766 1.63418 2.19528 2.52823 2.75711 3.04110 3.11333 3.28894 3.57094 3.67006 3.73541 3.78693 3.86703 3.87639 3.94191 3.96267 4.14680 4.38318 4.42143 4.49412 4.54201 4.55574 4.62620 4.67648 4.72443 4.73357 4.78112 4.84851 4.86737 4.89463 4.97176 5.01723 5.06024 5.10011 5.14248 5.17342 5.24269 5.32559 5.36251 5.42574 5.51183 5.57799 5.68972 5.86909 6.35691 6.42491 7.00928 7.09660 7.19193 7.92036 8.41956 9.20662 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.002781 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.022753 B =10065.169376 C =11159.839718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.374 5.374 4 O 0.091 5.909 5 C 0.063 3.937 6 C -0.119 4.119 7 C -0.146 4.146 8 C -0.150 4.150 9 C -0.269 4.269 10 C 0.607 3.393 11 O -0.564 6.564 12 N -0.698 5.698 13 C 0.140 3.860 14 C -0.053 4.053 15 C -0.137 4.137 16 C -0.117 4.117 17 C 0.179 3.821 18 N -0.610 5.610 19 C -0.260 4.260 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.271 1.271 27 C 0.142 3.858 28 C -0.111 4.111 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.410 0.590 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.005 0.995 46 H 0.047 0.953 47 H 0.248 0.752 48 H 0.021 0.979 49 H 0.048 0.952 50 H 0.084 0.916 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 12.907 -15.799 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.083 5.083 4 O 0.032 5.968 5 C 0.000 4.000 6 C -0.138 4.138 7 C -0.183 4.183 8 C -0.187 4.187 9 C -0.276 4.276 10 C 0.392 3.608 11 O -0.443 6.443 12 N -0.350 5.350 13 C 0.017 3.983 14 C -0.054 4.054 15 C -0.194 4.194 16 C -0.156 4.156 17 C 0.054 3.946 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.790 3.210 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.196 1.196 27 C 0.017 3.983 28 C -0.150 4.150 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.248 0.752 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.023 0.977 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.039 0.961 49 H 0.066 0.934 50 H 0.102 0.898 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.108 13.818 -16.382 21.460 hybrid contribution 0.627 -1.221 1.242 1.851 sum -0.480 12.598 -15.139 19.701 Atomic orbital electron populations 1.20382 0.83199 1.05239 1.04801 1.25199 0.99793 0.85915 0.99720 1.73612 0.89324 1.23748 1.21593 1.84478 1.21457 1.22556 1.68283 1.23918 0.96157 0.83229 0.96700 1.20686 0.83939 0.99825 1.09389 1.23230 0.95665 1.00236 0.99161 1.23239 0.99562 1.04288 0.91569 1.21808 0.93287 0.95035 1.17509 1.16850 0.76221 0.84013 0.83696 1.90801 1.52183 1.68452 1.32861 1.45989 1.69135 1.11744 1.08097 1.21440 1.00939 0.79568 0.96399 1.20565 0.95856 0.96046 0.92931 1.21878 0.97980 0.99195 1.00396 1.22051 0.96331 0.99882 0.97311 1.20579 0.97707 0.83980 0.92337 1.44299 1.25380 1.06229 1.57428 1.19495 1.23968 0.90129 1.05472 0.91955 1.25690 1.03381 0.98914 0.96405 1.70171 1.41772 1.24256 1.21633 0.85362 0.79744 0.79261 0.76667 1.21332 1.22290 1.19573 1.21050 0.88015 0.97953 0.91314 1.21877 1.01606 0.94201 0.97353 0.88714 0.89041 0.88485 0.84356 0.87333 0.85648 0.85813 0.88143 0.75239 0.90495 0.91983 0.91248 0.93528 0.92201 0.93495 0.91620 0.97680 0.93499 0.94247 0.96082 0.93381 0.89773 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.49 71.24 0.75 -0.51 16 2 C 0.06 1.26 7.59 45.16 0.34 1.60 16 3 N -0.37 -9.08 12.01 -44.78 -0.54 -9.62 16 4 O 0.09 2.08 10.86 76.97 0.84 2.92 16 5 C 0.06 1.38 7.00 25.48 0.18 1.56 16 6 C -0.12 -2.04 6.14 -11.54 -0.07 -2.11 16 7 C -0.15 -1.79 10.19 30.62 0.31 -1.47 16 8 C -0.15 -1.97 10.24 30.62 0.31 -1.65 16 9 C -0.27 -6.42 6.24 -18.74 -0.12 -6.54 16 10 C 0.61 15.75 7.63 86.65 0.66 16.41 16 11 O -0.56 -18.52 17.11 -4.06 -0.07 -18.59 16 12 N -0.70 -15.80 4.94 -466.41 -2.31 -18.10 16 13 C 0.14 3.37 4.56 86.38 0.39 3.76 16 14 C -0.05 -1.46 0.53 -52.16 -0.03 -1.49 16 15 C -0.14 -3.52 7.54 71.98 0.54 -2.98 16 16 C -0.12 -3.88 4.75 30.67 0.15 -3.74 16 17 C 0.18 8.06 4.84 86.36 0.42 8.48 16 18 N -0.61 -29.20 2.99 -699.09 -2.09 -31.29 16 19 C -0.26 -14.01 9.59 84.03 0.81 -13.21 16 20 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 21 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 22 N -0.93 -53.86 11.19 21.65 0.24 -53.62 16 23 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.14 5.48 6.05 86.36 0.52 6.01 16 28 C -0.11 -3.31 4.90 30.67 0.15 -3.16 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.11 1.29 8.02 -2.39 -0.02 1.27 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.41 8.43 6.14 -92.71 -0.57 7.87 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.49 4.98 -2.39 -0.01 1.48 16 42 H 0.06 1.34 6.86 -2.39 -0.02 1.32 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.89 6.82 -2.39 -0.02 1.87 16 45 H 0.01 0.25 6.69 -2.39 -0.02 0.23 16 46 H 0.05 2.46 6.04 -2.39 -0.01 2.45 16 47 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 48 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 49 H 0.05 1.87 7.94 -2.39 -0.02 1.85 16 50 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 51 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.26 405.43 4.21 -64.05 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.38 Total: 19.22 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.74 Total: -1.28 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.69 Total: -112.63 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.77 Total: -15.67 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.26 4.21 -64.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716886320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.937 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds