Wall clock time and date at job start Wed Apr 1 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38176 * 120.49657 * 2 1 4 4 N 1.31792 * 120.89118 * 180.29182 * 3 2 1 5 5 C 1.31832 * 122.04960 * 359.71278 * 4 3 2 6 6 C 1.38120 * 120.89603 * 359.97438 * 5 4 3 7 7 C 1.39792 * 120.50021 * 179.70542 * 2 1 3 8 8 C 1.48146 * 120.92336 * 0.02562 * 7 2 1 9 9 O 1.21509 * 120.00757 * 54.20414 * 8 7 2 10 10 N 1.34780 * 119.99783 * 234.20714 * 8 7 2 11 11 C 1.46927 * 120.63433 * 175.93336 * 10 8 7 12 12 C 1.53189 * 108.89606 * 233.51604 * 11 10 8 13 13 C 1.53074 * 109.29286 * 305.57858 * 12 11 10 14 14 O 1.42905 * 109.45311 * 181.24390 * 13 12 11 15 15 C 1.42894 * 114.00155 * 89.78483 * 14 13 12 16 16 C 1.53003 * 109.47383 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47343 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46716 * 180.02562 * 17 16 15 19 19 C 1.36940 * 119.99631 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00146 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99475 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00022 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46908 * 60.00422 * 23 21 19 25 25 H 1.48504 * 109.46933 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47336 * 300.00253 * 23 21 19 27 27 C 1.53046 * 109.66269 * 61.15179 * 13 12 11 28 28 C 1.46932 * 120.62742 * 355.91106 * 10 8 7 29 29 H 1.08996 * 109.47567 * 274.69735 * 1 2 3 30 30 H 1.09002 * 109.47189 * 34.70386 * 1 2 3 31 31 H 1.09002 * 109.46789 * 154.69752 * 1 2 3 32 32 H 1.08001 * 119.55186 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.54815 * 180.02562 * 5 4 3 34 34 H 1.08007 * 120.49407 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.58254 * 353.37535 * 11 10 8 36 36 H 1.08997 * 109.58611 * 113.65544 * 11 10 8 37 37 H 1.09004 * 109.49557 * 65.38434 * 12 11 10 38 38 H 1.08993 * 109.50070 * 185.48173 * 12 11 10 39 39 H 1.09002 * 109.33454 * 301.13471 * 13 12 11 40 40 H 1.09000 * 109.47186 * 300.00351 * 15 14 13 41 41 H 1.09000 * 109.47163 * 60.00189 * 15 14 13 42 42 H 1.09003 * 109.46714 * 300.00383 * 16 15 14 43 43 H 1.09000 * 109.46857 * 59.99953 * 16 15 14 44 44 H 1.08996 * 109.46901 * 299.99914 * 17 16 15 45 45 H 1.08997 * 109.46460 * 60.00286 * 17 16 15 46 46 H 0.96996 * 120.00594 * 359.97438 * 18 17 16 47 47 H 0.96999 * 119.99292 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.49892 * 178.74666 * 27 13 12 49 49 H 1.09003 * 109.51904 * 58.66821 * 27 13 12 50 50 H 1.09003 * 109.58280 * 246.19653 * 28 10 8 51 51 H 1.08997 * 109.58824 * 6.48069 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1997 -0.0058 5 6 4.2334 0.0871 -0.0061 6 6 3.6137 -1.1472 0.0001 7 6 2.2166 -1.2045 0.0062 8 6 1.5079 -2.5054 0.0123 9 8 0.6771 -2.7489 -0.8403 10 7 1.7848 -3.4191 0.9637 11 6 1.0286 -4.6768 1.0366 12 6 0.4689 -4.8377 2.4534 13 6 1.6130 -4.7292 3.4646 14 8 1.0988 -4.9078 4.7859 15 6 1.0902 -6.2668 5.2275 16 6 0.5224 -6.3384 6.6465 17 6 0.5125 -7.7936 7.1190 18 7 -0.0318 -7.8621 8.4774 19 6 -0.1380 -9.0708 9.1123 20 1 0.1799 -9.9734 8.6117 21 6 -0.6532 -9.1358 10.3996 22 7 -1.0402 -8.0356 11.0098 23 14 -0.7988 -10.7846 11.2653 24 1 0.5470 -11.4007 11.3860 25 1 -1.3750 -10.5838 12.6191 26 1 -1.6844 -11.6802 10.4787 27 6 2.2685 -3.3507 3.3545 28 6 2.8488 -3.1765 1.9475 29 1 -0.3634 0.0842 1.0241 30 1 -0.3634 0.8449 -0.5851 31 1 -0.3633 -0.9291 -0.4392 32 1 1.6691 2.1264 -0.0004 33 1 5.3121 0.1417 -0.0105 34 1 4.1995 -2.0546 -0.0007 35 1 0.2077 -4.6515 0.3200 36 1 1.6883 -5.5135 0.8071 37 1 -0.2613 -4.0520 2.6475 38 1 -0.0109 -5.8119 2.5466 39 1 2.3536 -5.5012 3.2557 40 1 0.4700 -6.8625 4.5578 41 1 2.1081 -6.6567 5.2231 42 1 1.1423 -5.7425 7.3164 43 1 -0.4955 -5.9486 6.6505 44 1 -0.1076 -8.3889 6.4490 45 1 1.5303 -8.1837 7.1149 46 1 -0.3163 -7.0513 8.9275 47 1 -1.4006 -8.0811 11.9092 48 1 3.0681 -3.2682 4.0906 49 1 1.5230 -2.5771 3.5390 50 1 3.6575 -3.8913 1.7948 51 1 3.2305 -2.1623 1.8303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717518587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:39 Heat of formation + Delta-G solvation = -38.594232 kcal Electronic energy + Delta-G solvation = -29719.193076 eV Core-core repulsion = 25618.672725 eV Total energy + Delta-G solvation = -4100.520352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48729 -39.99728 -38.73124 -36.92830 -35.16446 -34.08968 -33.30362 -32.55536 -31.67291 -31.38096 -29.57947 -27.96944 -26.15866 -25.19506 -24.16903 -23.89524 -22.71663 -22.48913 -21.49763 -20.86961 -19.86376 -18.29744 -17.32222 -17.06773 -16.93873 -16.60557 -15.93350 -15.77840 -15.60375 -15.46053 -14.93739 -14.71802 -14.52644 -14.48425 -14.06402 -13.94959 -13.85305 -13.44602 -13.34634 -13.22241 -13.08558 -12.93153 -12.64924 -12.61076 -12.30353 -12.11270 -11.73476 -11.53044 -11.27860 -11.04827 -10.87134 -10.80142 -10.74525 -10.66198 -10.56166 -10.22925 -10.09087 -9.86211 -9.71548 -9.53389 -9.46666 -9.25154 -8.87847 -6.93650 -5.76732 -3.06089 0.33560 0.51122 2.06505 2.37691 3.19119 3.43848 3.44691 3.48585 3.49997 3.73592 3.88781 4.19026 4.24118 4.27609 4.41174 4.44464 4.54399 4.59517 4.71681 4.77090 4.82080 4.96195 4.99942 5.02911 5.07468 5.15220 5.17674 5.22636 5.27039 5.29272 5.33403 5.45663 5.52014 5.56127 5.57126 5.58341 5.72482 5.75111 5.84519 5.97857 5.98401 6.06246 6.07414 6.25671 6.34761 6.75398 6.80676 6.84815 7.21214 7.38284 7.52760 7.68388 8.42041 9.52861 10.10681 10.45469 11.46120 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.001525 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.803406 B =18358.866586 C =18574.081792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C 0.101 3.899 4 N -0.469 5.469 5 C 0.091 3.909 6 C -0.143 4.143 7 C -0.083 4.083 8 C 0.566 3.434 9 O -0.525 6.525 10 N -0.602 5.602 11 C 0.114 3.886 12 C -0.158 4.158 13 C 0.091 3.909 14 O -0.379 6.379 15 C 0.068 3.932 16 C -0.125 4.125 17 C 0.157 3.843 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C -0.132 4.132 28 C 0.101 3.899 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 17.293 -26.776 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.057 4.057 4 N -0.177 5.177 5 C -0.065 4.065 6 C -0.163 4.163 7 C -0.094 4.094 8 C 0.353 3.647 9 O -0.402 6.402 10 N -0.335 5.335 11 C -0.008 4.008 12 C -0.196 4.196 13 C 0.032 3.968 14 O -0.299 6.299 15 C -0.009 4.009 16 C -0.162 4.162 17 C 0.029 3.971 18 N -0.377 5.377 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.170 4.170 28 C -0.022 4.022 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.160 0.840 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.218 0.782 47 H 0.066 0.934 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.348 17.908 -27.074 34.070 hybrid contribution -0.440 -1.732 0.647 1.901 sum 9.908 16.175 -26.426 32.529 Atomic orbital electron populations 1.20995 0.89426 1.05099 1.03189 1.21000 0.98122 0.92442 0.97478 1.22735 0.89765 0.97386 0.95822 1.67573 1.08257 1.31771 1.10139 1.22751 1.00663 0.87096 0.95969 1.22320 0.93438 1.00474 1.00102 1.20153 0.94167 0.93673 1.01399 1.18241 0.82027 0.83114 0.81313 1.90783 1.33860 1.78503 1.37027 1.48097 1.36274 1.18858 1.30307 1.21655 0.96792 0.84522 0.97789 1.22465 0.99378 1.03922 0.93840 1.21978 0.94369 0.96957 0.83451 1.87948 1.84679 1.27409 1.29824 1.22543 0.99698 0.82234 0.96409 1.21672 1.01921 0.99064 0.93590 1.20508 0.96411 0.92111 0.88070 1.42328 1.75938 1.07510 1.11947 1.19194 1.35136 0.86387 0.96652 0.91191 1.24766 1.01809 0.97144 0.97300 1.69659 1.48470 1.26002 1.14025 0.86235 0.77705 0.83244 0.78798 1.21244 1.21635 1.21245 1.21979 1.01568 0.97417 0.96067 1.22039 0.89511 1.03200 0.87416 0.90418 0.90447 0.89315 0.81996 0.81987 0.84031 0.88385 0.90867 0.90473 0.89855 0.91989 0.93395 0.93336 0.91180 0.91190 0.96355 0.96361 0.78177 0.93420 0.89465 0.90467 0.90428 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 9.73 36.01 0.35 -0.55 16 2 C -0.09 -0.68 5.93 -104.06 -0.62 -1.30 16 3 C 0.10 0.72 10.88 -17.59 -0.19 0.53 16 4 N -0.47 -3.77 10.33 -13.30 -0.14 -3.91 16 5 C 0.09 0.56 11.17 -17.59 -0.20 0.36 16 6 C -0.14 -0.85 7.56 -39.03 -0.30 -1.15 16 7 C -0.08 -0.67 4.89 -104.65 -0.51 -1.18 16 8 C 0.57 5.37 6.66 -12.19 -0.08 5.29 16 9 O -0.53 -6.60 14.64 5.36 0.08 -6.52 16 10 N -0.60 -4.68 2.97 -173.77 -0.52 -5.20 16 11 C 0.11 0.88 6.42 -3.71 -0.02 0.86 16 12 C -0.16 -1.35 5.70 -26.60 -0.15 -1.50 16 13 C 0.09 0.83 2.57 -26.67 -0.07 0.76 16 14 O -0.38 -4.85 9.99 -35.23 -0.35 -5.20 16 15 C 0.07 0.89 5.75 37.16 0.21 1.10 16 16 C -0.12 -2.07 5.70 -26.73 -0.15 -2.23 16 17 C 0.16 3.17 6.26 -4.04 -0.03 3.15 16 18 N -0.73 -19.05 5.60 -59.91 -0.34 -19.38 16 19 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.13 -1.00 5.74 -26.61 -0.15 -1.15 16 28 C 0.10 0.58 5.61 -3.71 -0.02 0.56 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.40 8.12 -51.93 -0.42 -0.03 16 31 H 0.09 0.81 5.72 -51.93 -0.30 0.51 16 32 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 34 H 0.14 0.53 7.47 -52.48 -0.39 0.14 16 35 H 0.10 0.86 7.03 -51.93 -0.36 0.49 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 39 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 40 H 0.05 0.58 7.84 -51.93 -0.41 0.17 16 41 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.09 0.48 4.75 -51.93 -0.25 0.24 16 LS Contribution 409.50 15.07 6.17 6.17 Total: -1.00 -34.72 409.50 -9.85 -44.58 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.29 Total: 3.83 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.17 Total: -4.01 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.27 Total: -56.33 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.27 Total: -11.72 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.72 -9.85 -44.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.986 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds