Wall clock time and date at job start Wed Apr 1 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38176 * 120.49657 * 2 1 4 4 N 1.31792 * 120.89118 * 180.29182 * 3 2 1 5 5 C 1.31832 * 122.04960 * 359.71278 * 4 3 2 6 6 C 1.38120 * 120.89603 * 359.97438 * 5 4 3 7 7 C 1.39792 * 120.50021 * 179.70542 * 2 1 3 8 8 C 1.48146 * 120.92336 * 0.02562 * 7 2 1 9 9 O 1.21509 * 120.00757 * 54.20414 * 8 7 2 10 10 N 1.34780 * 119.99783 * 234.20714 * 8 7 2 11 11 C 1.46927 * 120.63433 * 175.93336 * 10 8 7 12 12 C 1.53189 * 108.89606 * 233.51604 * 11 10 8 13 13 C 1.53074 * 109.29286 * 305.57858 * 12 11 10 14 14 O 1.42905 * 109.45311 * 181.24390 * 13 12 11 15 15 C 1.42894 * 114.00155 * 89.78483 * 14 13 12 16 16 C 1.53003 * 109.47383 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47343 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46716 * 180.02562 * 17 16 15 19 19 C 1.36940 * 119.99631 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00146 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99475 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00022 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46908 * 60.00422 * 23 21 19 25 25 H 1.48504 * 109.46933 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47336 * 300.00253 * 23 21 19 27 27 C 1.53046 * 109.66269 * 61.15179 * 13 12 11 28 28 C 1.46932 * 120.62742 * 355.91106 * 10 8 7 29 29 H 1.08996 * 109.47567 * 274.69735 * 1 2 3 30 30 H 1.09002 * 109.47189 * 34.70386 * 1 2 3 31 31 H 1.09002 * 109.46789 * 154.69752 * 1 2 3 32 32 H 1.08001 * 119.55186 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.54815 * 180.02562 * 5 4 3 34 34 H 1.08007 * 120.49407 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.58254 * 353.37535 * 11 10 8 36 36 H 1.08997 * 109.58611 * 113.65544 * 11 10 8 37 37 H 1.09004 * 109.49557 * 65.38434 * 12 11 10 38 38 H 1.08993 * 109.50070 * 185.48173 * 12 11 10 39 39 H 1.09002 * 109.33454 * 301.13471 * 13 12 11 40 40 H 1.09000 * 109.47186 * 300.00351 * 15 14 13 41 41 H 1.09000 * 109.47163 * 60.00189 * 15 14 13 42 42 H 1.09003 * 109.46714 * 300.00383 * 16 15 14 43 43 H 1.09000 * 109.46857 * 59.99953 * 16 15 14 44 44 H 1.08996 * 109.46901 * 299.99914 * 17 16 15 45 45 H 1.08997 * 109.46460 * 60.00286 * 17 16 15 46 46 H 0.96996 * 120.00594 * 359.97438 * 18 17 16 47 47 H 0.96999 * 119.99292 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.49892 * 178.74666 * 27 13 12 49 49 H 1.09003 * 109.51904 * 58.66821 * 27 13 12 50 50 H 1.09003 * 109.58280 * 246.19653 * 28 10 8 51 51 H 1.08997 * 109.58824 * 6.48069 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1997 -0.0058 5 6 4.2334 0.0871 -0.0061 6 6 3.6137 -1.1472 0.0001 7 6 2.2166 -1.2045 0.0062 8 6 1.5079 -2.5054 0.0123 9 8 0.6771 -2.7489 -0.8403 10 7 1.7848 -3.4191 0.9637 11 6 1.0286 -4.6768 1.0366 12 6 0.4689 -4.8377 2.4534 13 6 1.6130 -4.7292 3.4646 14 8 1.0988 -4.9078 4.7859 15 6 1.0902 -6.2668 5.2275 16 6 0.5224 -6.3384 6.6465 17 6 0.5125 -7.7936 7.1190 18 7 -0.0318 -7.8621 8.4774 19 6 -0.1380 -9.0708 9.1123 20 1 0.1799 -9.9734 8.6117 21 6 -0.6532 -9.1358 10.3996 22 7 -1.0402 -8.0356 11.0098 23 14 -0.7988 -10.7846 11.2653 24 1 0.5470 -11.4007 11.3860 25 1 -1.3750 -10.5838 12.6191 26 1 -1.6844 -11.6802 10.4787 27 6 2.2685 -3.3507 3.3545 28 6 2.8488 -3.1765 1.9475 29 1 -0.3634 0.0842 1.0241 30 1 -0.3634 0.8449 -0.5851 31 1 -0.3633 -0.9291 -0.4392 32 1 1.6691 2.1264 -0.0004 33 1 5.3121 0.1417 -0.0105 34 1 4.1995 -2.0546 -0.0007 35 1 0.2077 -4.6515 0.3200 36 1 1.6883 -5.5135 0.8071 37 1 -0.2613 -4.0520 2.6475 38 1 -0.0109 -5.8119 2.5466 39 1 2.3536 -5.5012 3.2557 40 1 0.4700 -6.8625 4.5578 41 1 2.1081 -6.6567 5.2231 42 1 1.1423 -5.7425 7.3164 43 1 -0.4955 -5.9486 6.6505 44 1 -0.1076 -8.3889 6.4490 45 1 1.5303 -8.1837 7.1149 46 1 -0.3163 -7.0513 8.9275 47 1 -1.4006 -8.0811 11.9092 48 1 3.0681 -3.2682 4.0906 49 1 1.5230 -2.5771 3.5390 50 1 3.6575 -3.8913 1.7948 51 1 3.2305 -2.1623 1.8303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717518587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:38 Heat of formation + Delta-G solvation = -61.034679 kcal Electronic energy + Delta-G solvation = -29720.166167 eV Core-core repulsion = 25618.672725 eV Total energy + Delta-G solvation = -4101.493442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07639 -40.60373 -39.55753 -37.82954 -36.84029 -34.66187 -34.35750 -33.68426 -32.69699 -31.97546 -31.24444 -28.50424 -27.16269 -26.44549 -25.01578 -24.49306 -24.09642 -23.24890 -22.47243 -22.00492 -20.49411 -19.16331 -18.87036 -17.94416 -17.74058 -17.38680 -16.85227 -16.59707 -16.41631 -16.20341 -15.98315 -15.75071 -15.47385 -15.25934 -15.19325 -15.00613 -14.78160 -14.58571 -14.37762 -14.12479 -13.93503 -13.72677 -13.44371 -13.30111 -13.22710 -12.91671 -12.83167 -12.59757 -12.47495 -12.44451 -12.33094 -12.14162 -12.07743 -11.79761 -11.72159 -11.59634 -11.45270 -10.94032 -10.78654 -10.48392 -10.35517 -9.96131 -9.89090 -9.03463 -7.96501 -5.26835 -0.21255 0.03708 1.38806 1.47425 1.51248 1.57470 1.77700 2.49443 2.63687 2.70642 3.16045 3.37009 3.47429 3.63810 3.74945 3.77063 3.77786 3.88722 3.94181 3.96093 4.07751 4.10630 4.22168 4.27179 4.34815 4.36856 4.40254 4.49433 4.55946 4.58688 4.63809 4.68565 4.69502 4.72445 4.75397 4.78271 4.79762 4.83047 4.90761 5.05517 5.09780 5.18229 5.19030 5.31765 5.32427 5.37637 5.47804 5.59703 6.12659 6.24690 6.32152 6.85697 6.89876 7.31096 8.06475 8.29406 9.27096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.001525 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.803406 B =18358.866586 C =18574.081792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.095 3.905 4 N -0.491 5.491 5 C 0.090 3.910 6 C -0.135 4.135 7 C -0.099 4.099 8 C 0.563 3.437 9 O -0.565 6.565 10 N -0.599 5.599 11 C 0.117 3.883 12 C -0.152 4.152 13 C 0.086 3.914 14 O -0.401 6.401 15 C 0.077 3.923 16 C -0.114 4.114 17 C 0.155 3.845 18 N -0.750 5.750 19 C -0.252 4.252 20 H 0.079 0.921 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.276 1.276 27 C -0.128 4.128 28 C 0.104 3.896 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.180 0.820 33 H 0.192 0.808 34 H 0.168 0.832 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.025 0.975 45 H 0.028 0.972 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.096 0.904 49 H 0.058 0.942 50 H 0.106 0.894 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.640 16.557 -27.753 34.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 C -0.062 4.062 4 N -0.200 5.200 5 C -0.066 4.066 6 C -0.155 4.155 7 C -0.111 4.111 8 C 0.352 3.648 9 O -0.445 6.445 10 N -0.331 5.331 11 C -0.005 4.005 12 C -0.190 4.190 13 C 0.028 3.972 14 O -0.320 6.320 15 C 0.001 3.999 16 C -0.152 4.152 17 C 0.029 3.971 18 N -0.393 5.393 19 C -0.383 4.383 20 H 0.097 0.903 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.807 3.193 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.202 1.202 27 C -0.167 4.167 28 C -0.018 4.018 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.197 0.803 33 H 0.209 0.791 34 H 0.185 0.815 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.204 0.796 47 H 0.061 0.939 48 H 0.115 0.885 49 H 0.077 0.923 50 H 0.125 0.875 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.604 17.161 -28.080 35.240 hybrid contribution -1.100 -1.463 0.895 2.037 sum 11.505 15.699 -27.185 33.434 Atomic orbital electron populations 1.20939 0.89454 1.04457 1.03437 1.21128 0.98341 0.92833 0.98137 1.22999 0.89795 0.97853 0.95514 1.67619 1.08636 1.32882 1.10862 1.23265 1.01957 0.86597 0.94764 1.22569 0.92522 1.01574 0.98827 1.20219 0.95249 0.92947 1.02642 1.18505 0.81544 0.83674 0.81073 1.90760 1.35658 1.79287 1.38774 1.48188 1.36376 1.18446 1.30076 1.21635 0.96935 0.85277 0.96644 1.22389 0.98962 1.03281 0.94375 1.22222 0.94790 0.98462 0.81711 1.87915 1.85290 1.26992 1.31838 1.22352 1.00571 0.82925 0.94091 1.21482 1.01296 0.96407 0.95998 1.20669 0.96337 0.94590 0.85516 1.42598 1.76303 1.06406 1.13989 1.19656 1.34113 0.87559 0.97004 0.90288 1.25667 1.02229 1.00808 0.98305 1.69830 1.49918 1.28257 1.14135 0.85133 0.78027 0.78964 0.77149 1.20108 1.22119 1.20245 1.21962 1.01300 0.95890 0.97524 1.22199 0.89273 1.04720 0.85572 0.90120 0.88816 0.91744 0.80267 0.79149 0.81488 0.89914 0.88614 0.92550 0.89633 0.89890 0.92219 0.91585 0.92153 0.92566 0.95682 0.95406 0.79552 0.93925 0.88522 0.92327 0.87550 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.73 71.24 0.69 -1.12 16 2 C -0.10 -1.55 5.93 -19.50 -0.12 -1.66 16 3 C 0.10 1.28 10.88 84.68 0.92 2.20 16 4 N -0.49 -7.18 10.33 -196.00 -2.03 -9.21 16 5 C 0.09 0.90 11.17 84.66 0.95 1.84 16 6 C -0.13 -1.31 7.56 22.63 0.17 -1.14 16 7 C -0.10 -1.52 4.89 -19.88 -0.10 -1.62 16 8 C 0.56 10.55 6.66 86.88 0.58 11.13 16 9 O -0.57 -14.72 14.64 -3.74 -0.05 -14.77 16 10 N -0.60 -8.53 2.97 -821.97 -2.45 -10.97 16 11 C 0.12 1.67 6.42 86.36 0.55 2.22 16 12 C -0.15 -2.47 5.70 30.68 0.18 -2.29 16 13 C 0.09 1.39 2.57 30.63 0.08 1.47 16 14 O -0.40 -9.67 9.99 -148.98 -1.49 -11.16 16 15 C 0.08 1.87 5.75 71.98 0.41 2.29 16 16 C -0.11 -3.73 5.70 30.60 0.17 -3.55 16 17 C 0.16 6.14 6.26 86.38 0.54 6.68 16 18 N -0.75 -39.14 5.60 -343.46 -1.92 -41.06 16 19 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 20 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 23 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C -0.13 -1.70 5.74 30.67 0.18 -1.53 16 28 C 0.10 0.93 5.61 86.36 0.48 1.41 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 31 H 0.06 1.27 5.72 -2.39 -0.01 1.25 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.17 0.67 7.47 -2.91 -0.02 0.64 16 35 H 0.08 1.47 7.03 -2.39 -0.02 1.46 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.09 1.34 7.84 -2.39 -0.02 1.33 16 39 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 40 H 0.06 1.31 7.84 -2.39 -0.02 1.29 16 41 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 47 H 0.25 15.14 8.31 -92.71 -0.77 14.36 16 48 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.10 0.78 4.75 -2.39 -0.01 0.77 16 Total: -1.00 -76.03 409.50 1.59 -74.44 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.22 Total: 25.72 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 7.00 Total: -1.13 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -6.11 Total: -121.26 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.54 Total: -25.93 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.03 1.59 -74.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.408 kcal (2) G-P(sol) polarization free energy of solvation -76.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds