Wall clock time and date at job start Wed Apr 1 2020 04:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.80207 * 2 1 4 4 C 1.35447 * 103.98127 * 180.16494 * 3 2 1 5 5 C 1.50708 * 126.77346 * 179.90968 * 4 3 2 6 6 C 1.50695 * 115.54917 * 329.92973 * 5 4 3 7 7 O 1.21281 * 120.00352 * 89.33841 * 6 5 4 8 8 N 1.34782 * 119.99900 * 269.34100 * 6 5 4 9 9 C 1.46504 * 119.99875 * 184.99639 * 8 6 5 10 10 C 1.52998 * 109.46944 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.44882 * 295.04571 * 10 9 8 12 12 C 1.54866 * 109.44649 * 175.13493 * 10 9 8 13 13 C 1.47155 * 110.31773 * 168.73264 * 12 10 9 14 14 C 1.52574 * 114.34457 * 62.76738 * 13 12 10 15 15 C 1.50878 * 109.34791 * 274.99842 * 14 13 12 16 16 C 1.53940 * 110.09374 * 91.89306 * 15 14 13 17 17 N 1.44579 * 109.45283 * 54.99657 * 10 9 8 18 18 C 1.36939 * 118.63602 * 30.76051 * 17 10 9 19 19 H 1.07998 * 120.00412 * 31.02227 * 18 17 10 20 20 C 1.38813 * 119.99318 * 211.02544 * 18 17 10 21 21 N 1.31624 * 120.00407 * 10.15281 * 20 18 17 22 22 Si 1.86796 * 119.99805 * 190.15734 * 20 18 17 23 23 H 1.48499 * 109.47300 * 59.99982 * 22 20 18 24 24 H 1.48505 * 109.47112 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47022 * 299.99535 * 22 20 18 26 26 C 1.52997 * 117.51631 * 115.63333 * 5 4 3 27 27 C 1.53001 * 117.49643 * 184.26376 * 5 4 3 28 28 O 1.34035 * 106.45022 * 359.64184 * 4 3 2 29 29 N 1.20919 * 111.56802 * 0.24375 * 28 4 3 30 30 H 1.09000 * 109.47275 * 270.25866 * 1 2 3 31 31 H 1.09003 * 109.47150 * 30.25647 * 1 2 3 32 32 H 1.09000 * 109.47018 * 150.26080 * 1 2 3 33 33 H 1.07998 * 128.00778 * 0.06520 * 3 2 1 34 34 H 0.97000 * 120.00148 * 4.99061 * 8 6 5 35 35 H 1.08995 * 109.46759 * 299.99586 * 9 8 6 36 36 H 1.08999 * 109.46981 * 59.99302 * 9 8 6 37 37 H 1.09000 * 109.32587 * 288.96422 * 12 10 9 38 38 H 1.09002 * 109.33565 * 48.44349 * 12 10 9 39 39 H 1.09005 * 108.48836 * 301.52527 * 13 12 10 40 40 H 1.08994 * 108.52404 * 184.04377 * 13 12 10 41 41 H 1.09002 * 109.48724 * 155.03144 * 14 13 12 42 42 H 1.08994 * 109.48613 * 34.96470 * 14 13 12 43 43 H 1.08997 * 109.37021 * 331.69533 * 15 14 13 44 44 H 1.09005 * 109.26114 * 212.01380 * 15 14 13 45 45 H 1.09006 * 108.94547 * 198.75017 * 16 15 14 46 46 H 1.08998 * 108.95484 * 80.11724 * 16 15 14 47 47 H 0.96991 * 120.00334 * 180.02562 * 21 20 18 48 48 H 1.09006 * 117.49211 * 214.96628 * 26 5 4 49 49 H 1.08993 * 117.50296 * 359.97438 * 26 5 4 50 50 H 1.09003 * 117.50077 * 359.97229 * 27 5 4 51 51 H 1.09002 * 117.49801 * 144.97183 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6067 -0.0038 5 6 4.9022 1.3695 -0.0074 6 6 4.8653 2.7134 -0.6881 7 8 4.5750 3.7062 -0.0549 8 7 5.1548 2.8121 -2.0008 9 6 5.2262 4.1293 -2.6381 10 6 5.5688 3.9610 -4.1197 11 1 6.5692 3.5388 -4.2152 12 6 5.5237 5.3418 -4.8195 13 6 6.1053 5.2505 -6.1681 14 6 5.3527 4.3214 -7.1160 15 6 5.8333 2.9055 -6.9144 16 6 4.9541 2.1920 -5.8715 17 7 4.6103 3.0724 -4.7377 18 6 3.3307 3.0463 -4.2507 19 1 2.8980 3.9377 -3.8212 20 6 2.5898 1.8739 -4.3092 21 7 3.1732 0.7425 -4.6442 22 14 0.7646 1.9018 -3.9126 23 1 0.0673 2.8141 -4.8542 24 1 0.2076 0.5318 -4.0478 25 1 0.5677 2.3815 -2.5211 26 6 5.8125 1.2206 1.2133 27 6 6.1961 0.5598 -0.1123 28 8 3.4537 -0.7253 0.0023 29 7 2.2868 -1.0423 0.0043 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5098 33 1 2.0710 2.1743 0.0010 34 1 5.3159 2.0110 -2.5235 35 1 4.2638 4.6319 -2.5423 36 1 5.9979 4.7265 -2.1525 37 1 4.4883 5.6741 -4.8952 38 1 6.0894 6.0636 -4.2303 39 1 7.1320 4.8956 -6.0785 40 1 6.1249 6.2488 -6.6051 41 1 5.5380 4.6253 -8.1462 42 1 4.2845 4.3763 -6.9068 43 1 6.8663 2.9204 -6.5669 44 1 5.7783 2.3688 -7.8615 45 1 5.4896 1.3210 -5.4936 46 1 4.0344 1.8588 -6.3523 47 1 2.6554 -0.0766 -4.6854 48 1 6.3847 2.0949 1.5239 49 1 5.4713 0.5713 2.0194 50 1 6.1074 -0.5246 -0.1782 51 1 7.0206 0.9990 -0.6740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717539311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:36 Heat of formation + Delta-G solvation = 66.847389 kcal Electronic energy + Delta-G solvation = -33181.131041 eV Core-core repulsion = 29085.182982 eV Total energy + Delta-G solvation = -4095.948060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.59841 -39.70047 -38.23848 -36.49758 -34.53420 -34.45768 -33.48222 -31.70841 -31.20762 -30.70349 -28.46848 -27.25281 -25.83729 -24.33982 -23.47243 -22.99085 -22.49721 -21.94558 -20.53427 -19.85195 -19.21477 -18.88663 -17.59366 -17.23183 -16.54563 -16.05133 -15.60965 -15.29512 -15.08679 -14.65027 -14.20952 -14.11497 -13.79319 -13.57149 -13.39972 -13.21525 -13.14026 -12.92512 -12.75046 -12.72995 -12.24313 -12.07449 -11.98360 -11.61585 -11.51963 -11.33178 -11.18056 -11.05890 -10.89366 -10.82795 -10.70769 -10.64218 -10.23793 -10.06330 -10.00949 -9.71467 -9.67495 -9.61575 -9.58659 -9.34658 -8.83716 -8.44463 -8.29215 -6.67345 -5.83812 -3.32544 1.71315 2.53846 2.72609 3.32265 3.36296 3.38982 3.40410 3.74111 3.90210 4.40968 4.44144 4.48277 4.79917 4.91728 5.07695 5.18490 5.33159 5.39492 5.43933 5.47206 5.50760 5.58517 5.61267 5.61975 5.69097 5.75497 5.84863 5.87930 5.98821 6.01425 6.05173 6.05666 6.06938 6.12177 6.25923 6.35907 6.41010 6.53816 6.59464 6.62774 6.67982 6.72969 6.82874 6.96487 7.07221 7.16905 7.40074 7.66862 7.79420 8.20448 8.42550 8.55940 8.77635 9.19381 9.82353 10.28730 11.22263 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011034 B = 0.004904 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.084391 B = 5708.279219 C = 7060.736029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.019 3.981 3 C -0.205 4.205 4 C 0.020 3.980 5 C -0.079 4.079 6 C 0.555 3.445 7 O -0.550 6.550 8 N -0.676 5.676 9 C 0.129 3.871 10 C 0.174 3.826 11 H 0.044 0.956 12 C -0.136 4.136 13 C -0.100 4.100 14 C -0.106 4.106 15 C -0.143 4.143 16 C 0.182 3.818 17 N -0.582 5.582 18 C -0.253 4.253 19 H 0.059 0.941 20 C 0.021 3.979 21 N -0.899 5.899 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.132 4.132 27 C -0.151 4.151 28 O 0.101 5.899 29 N -0.366 5.366 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.169 0.831 34 H 0.415 0.585 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.048 0.952 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.253 0.747 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.111 0.889 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 1.411 5.225 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C -0.226 4.226 4 C -0.044 4.044 5 C -0.084 4.084 6 C 0.338 3.662 7 O -0.429 6.429 8 N -0.325 5.325 9 C 0.004 3.996 10 C 0.065 3.935 11 H 0.062 0.938 12 C -0.177 4.177 13 C -0.138 4.138 14 C -0.144 4.144 15 C -0.182 4.182 16 C 0.057 3.943 17 N -0.304 5.304 18 C -0.383 4.383 19 H 0.077 0.923 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.170 4.170 27 C -0.188 4.188 28 O 0.035 5.965 29 N -0.071 5.071 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.186 0.814 34 H 0.251 0.749 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.042 0.958 46 H 0.091 0.909 47 H 0.063 0.937 48 H 0.128 0.872 49 H 0.124 0.876 50 H 0.130 0.870 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.052 0.597 5.611 7.574 hybrid contribution -1.274 0.445 -0.348 1.394 sum 3.778 1.042 5.264 6.562 Atomic orbital electron populations 1.20165 0.86376 1.03876 1.02922 1.23445 0.98820 0.88851 1.02823 1.22303 0.90928 1.01175 1.08242 1.22575 0.95328 0.83363 1.03103 1.19301 0.87510 0.95284 1.06258 1.18726 0.77549 0.87323 0.82570 1.90655 1.49030 1.37577 1.65594 1.45643 1.68056 1.10962 1.07795 1.21536 1.01130 0.83814 0.93096 1.20506 0.93122 0.90657 0.89235 0.93754 1.21384 1.01181 0.98948 0.96167 1.20293 0.99049 0.98446 0.96019 1.20943 1.01757 0.95058 0.96623 1.22076 0.99698 0.96497 0.99944 1.20999 0.97495 0.89937 0.85874 1.43662 1.07335 1.45990 1.33430 1.18907 0.89372 0.93951 1.36076 0.92286 1.24951 0.97767 0.95150 0.99995 1.69954 1.34413 0.97974 1.51888 0.86655 0.86608 0.76643 0.78757 1.21211 1.21691 1.20451 1.23111 0.99519 1.03216 0.91136 1.23197 0.95327 1.00330 0.99929 1.84730 1.21700 1.22133 1.67958 1.73766 0.89163 1.23786 1.20418 0.90298 0.90147 0.90658 0.81386 0.74856 0.91196 0.93094 0.91868 0.93346 0.93550 0.94136 0.94253 0.90809 0.93835 0.93336 0.95753 0.90907 0.93689 0.87166 0.87611 0.87028 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.47 36.01 0.38 -0.74 16 2 C 0.02 0.35 7.33 -82.10 -0.60 -0.26 16 3 C -0.21 -3.89 10.59 -39.38 -0.42 -4.30 16 4 C 0.02 0.36 6.77 -35.30 -0.24 0.12 16 5 C -0.08 -1.27 2.38 -156.81 -0.37 -1.64 16 6 C 0.56 10.32 6.55 -10.99 -0.07 10.25 16 7 O -0.55 -11.55 17.11 5.56 0.10 -11.45 16 8 N -0.68 -12.58 4.71 -60.29 -0.28 -12.87 16 9 C 0.13 2.34 4.53 -4.04 -0.02 2.32 16 10 C 0.17 3.11 2.19 -67.97 -0.15 2.96 16 11 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 12 C -0.14 -2.19 5.07 -28.55 -0.14 -2.34 16 13 C -0.10 -1.52 5.16 -29.76 -0.15 -1.67 16 14 C -0.11 -1.75 5.51 -28.01 -0.15 -1.91 16 15 C -0.14 -2.48 5.71 -27.31 -0.16 -2.63 16 16 C 0.18 3.84 4.64 -2.95 -0.01 3.83 16 17 N -0.58 -12.21 1.77 -164.47 -0.29 -12.50 16 18 C -0.25 -6.07 7.54 -15.06 -0.11 -6.18 16 19 H 0.06 1.49 6.84 -52.49 -0.36 1.13 16 20 C 0.02 0.53 4.98 -17.43 -0.09 0.44 16 21 N -0.90 -23.56 10.99 55.49 0.61 -22.95 16 22 Si 0.88 21.11 29.57 -169.99 -5.03 16.08 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C -0.13 -1.63 9.94 -26.73 -0.27 -1.90 16 27 C -0.15 -1.89 9.88 -26.73 -0.26 -2.15 16 28 O 0.10 1.85 10.97 17.19 0.19 2.04 16 29 N -0.37 -6.99 12.07 33.42 0.40 -6.59 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.17 3.22 8.06 -52.49 -0.42 2.80 16 34 H 0.41 8.18 8.08 -40.82 -0.33 7.85 16 35 H 0.07 1.43 6.90 -51.93 -0.36 1.07 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 39 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.41 7.48 -51.93 -0.39 1.03 16 43 H 0.04 0.71 7.32 -51.93 -0.38 0.33 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.02 0.56 7.99 -51.93 -0.41 0.14 16 46 H 0.07 1.77 6.51 -51.93 -0.34 1.43 16 47 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 48 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.11 1.32 8.00 -51.93 -0.42 0.91 16 51 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 406.33 15.07 6.12 6.12 Total: -1.00 -27.73 406.33 -9.44 -37.17 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.41 Total: 10.76 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.85 Total: -5.81 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.44 Total: -54.91 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.28 Total: -9.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -27.73 -9.44 -37.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717539311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.015 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds