Wall clock time and date at job start Wed Apr 1 2020 04:33:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.41382 * 126.80207 * 2 1
4 4 C 1.35447 * 103.98127 * 180.16494 * 3 2 1
5 5 C 1.50708 * 126.77346 * 179.90968 * 4 3 2
6 6 C 1.50695 * 115.54917 * 329.92973 * 5 4 3
7 7 O 1.21281 * 120.00352 * 89.33841 * 6 5 4
8 8 N 1.34782 * 119.99900 * 269.34100 * 6 5 4
9 9 C 1.46504 * 119.99875 * 184.99639 * 8 6 5
10 10 C 1.52998 * 109.46944 * 179.97438 * 9 8 6
11 11 H 1.08998 * 109.44882 * 295.04571 * 10 9 8
12 12 C 1.54866 * 109.44649 * 175.13493 * 10 9 8
13 13 C 1.47155 * 110.31773 * 168.73264 * 12 10 9
14 14 C 1.52574 * 114.34457 * 62.76738 * 13 12 10
15 15 C 1.50878 * 109.34791 * 274.99842 * 14 13 12
16 16 C 1.53940 * 110.09374 * 91.89306 * 15 14 13
17 17 N 1.44579 * 109.45283 * 54.99657 * 10 9 8
18 18 C 1.36939 * 118.63602 * 30.76051 * 17 10 9
19 19 H 1.07998 * 120.00412 * 31.02227 * 18 17 10
20 20 C 1.38813 * 119.99318 * 211.02544 * 18 17 10
21 21 N 1.31624 * 120.00407 * 10.15281 * 20 18 17
22 22 Si 1.86796 * 119.99805 * 190.15734 * 20 18 17
23 23 H 1.48499 * 109.47300 * 59.99982 * 22 20 18
24 24 H 1.48505 * 109.47112 * 179.97438 * 22 20 18
25 25 H 1.48501 * 109.47022 * 299.99535 * 22 20 18
26 26 C 1.52997 * 117.51631 * 115.63333 * 5 4 3
27 27 C 1.53001 * 117.49643 * 184.26376 * 5 4 3
28 28 O 1.34035 * 106.45022 * 359.64184 * 4 3 2
29 29 N 1.20919 * 111.56802 * 0.24375 * 28 4 3
30 30 H 1.09000 * 109.47275 * 270.25866 * 1 2 3
31 31 H 1.09003 * 109.47150 * 30.25647 * 1 2 3
32 32 H 1.09000 * 109.47018 * 150.26080 * 1 2 3
33 33 H 1.07998 * 128.00778 * 0.06520 * 3 2 1
34 34 H 0.97000 * 120.00148 * 4.99061 * 8 6 5
35 35 H 1.08995 * 109.46759 * 299.99586 * 9 8 6
36 36 H 1.08999 * 109.46981 * 59.99302 * 9 8 6
37 37 H 1.09000 * 109.32587 * 288.96422 * 12 10 9
38 38 H 1.09002 * 109.33565 * 48.44349 * 12 10 9
39 39 H 1.09005 * 108.48836 * 301.52527 * 13 12 10
40 40 H 1.08994 * 108.52404 * 184.04377 * 13 12 10
41 41 H 1.09002 * 109.48724 * 155.03144 * 14 13 12
42 42 H 1.08994 * 109.48613 * 34.96470 * 14 13 12
43 43 H 1.08997 * 109.37021 * 331.69533 * 15 14 13
44 44 H 1.09005 * 109.26114 * 212.01380 * 15 14 13
45 45 H 1.09006 * 108.94547 * 198.75017 * 16 15 14
46 46 H 1.08998 * 108.95484 * 80.11724 * 16 15 14
47 47 H 0.96991 * 120.00334 * 180.02562 * 21 20 18
48 48 H 1.09006 * 117.49211 * 214.96628 * 26 5 4
49 49 H 1.08993 * 117.50296 * 359.97438 * 26 5 4
50 50 H 1.09003 * 117.50077 * 359.97229 * 27 5 4
51 51 H 1.09002 * 117.49801 * 144.97183 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3540 1.1321 0.0000
4 6 3.6024 0.6067 -0.0038
5 6 4.9022 1.3695 -0.0074
6 6 4.8653 2.7134 -0.6881
7 8 4.5750 3.7062 -0.0549
8 7 5.1548 2.8121 -2.0008
9 6 5.2262 4.1293 -2.6381
10 6 5.5688 3.9610 -4.1197
11 1 6.5692 3.5388 -4.2152
12 6 5.5237 5.3418 -4.8195
13 6 6.1053 5.2505 -6.1681
14 6 5.3527 4.3214 -7.1160
15 6 5.8333 2.9055 -6.9144
16 6 4.9541 2.1920 -5.8715
17 7 4.6103 3.0724 -4.7377
18 6 3.3307 3.0463 -4.2507
19 1 2.8980 3.9377 -3.8212
20 6 2.5898 1.8739 -4.3092
21 7 3.1732 0.7425 -4.6442
22 14 0.7646 1.9018 -3.9126
23 1 0.0673 2.8141 -4.8542
24 1 0.2076 0.5318 -4.0478
25 1 0.5677 2.3815 -2.5211
26 6 5.8125 1.2206 1.2133
27 6 6.1961 0.5598 -0.1123
28 8 3.4537 -0.7253 0.0023
29 7 2.2868 -1.0423 0.0043
30 1 -0.3634 0.0046 1.0276
31 1 -0.3633 0.8877 -0.5178
32 1 -0.3633 -0.8923 -0.5098
33 1 2.0710 2.1743 0.0010
34 1 5.3159 2.0110 -2.5235
35 1 4.2638 4.6319 -2.5423
36 1 5.9979 4.7265 -2.1525
37 1 4.4883 5.6741 -4.8952
38 1 6.0894 6.0636 -4.2303
39 1 7.1320 4.8956 -6.0785
40 1 6.1249 6.2488 -6.6051
41 1 5.5380 4.6253 -8.1462
42 1 4.2845 4.3763 -6.9068
43 1 6.8663 2.9204 -6.5669
44 1 5.7783 2.3688 -7.8615
45 1 5.4896 1.3210 -5.4936
46 1 4.0344 1.8588 -6.3523
47 1 2.6554 -0.0766 -4.6854
48 1 6.3847 2.0949 1.5239
49 1 5.4713 0.5713 2.0194
50 1 6.1074 -0.5246 -0.1782
51 1 7.0206 0.9990 -0.6740
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717539311.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:33:36
Heat of formation + Delta-G solvation = 66.847389 kcal
Electronic energy + Delta-G solvation = -33181.131041 eV
Core-core repulsion = 29085.182982 eV
Total energy + Delta-G solvation = -4095.948060 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-44.59841 -39.70047 -38.23848 -36.49758 -34.53420 -34.45768 -33.48222 -31.70841
-31.20762 -30.70349 -28.46848 -27.25281 -25.83729 -24.33982 -23.47243 -22.99085
-22.49721 -21.94558 -20.53427 -19.85195 -19.21477 -18.88663 -17.59366 -17.23183
-16.54563 -16.05133 -15.60965 -15.29512 -15.08679 -14.65027 -14.20952 -14.11497
-13.79319 -13.57149 -13.39972 -13.21525 -13.14026 -12.92512 -12.75046 -12.72995
-12.24313 -12.07449 -11.98360 -11.61585 -11.51963 -11.33178 -11.18056 -11.05890
-10.89366 -10.82795 -10.70769 -10.64218 -10.23793 -10.06330 -10.00949 -9.71467
-9.67495 -9.61575 -9.58659 -9.34658 -8.83716 -8.44463 -8.29215 -6.67345
-5.83812 -3.32544 1.71315 2.53846 2.72609 3.32265 3.36296 3.38982
3.40410 3.74111 3.90210 4.40968 4.44144 4.48277 4.79917 4.91728
5.07695 5.18490 5.33159 5.39492 5.43933 5.47206 5.50760 5.58517
5.61267 5.61975 5.69097 5.75497 5.84863 5.87930 5.98821 6.01425
6.05173 6.05666 6.06938 6.12177 6.25923 6.35907 6.41010 6.53816
6.59464 6.62774 6.67982 6.72969 6.82874 6.96487 7.07221 7.16905
7.40074 7.66862 7.79420 8.20448 8.42550 8.55940 8.77635 9.19381
9.82353 10.28730 11.22263
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011034 B = 0.004904 C = 0.003965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2537.084391 B = 5708.279219 C = 7060.736029
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.019 3.981
3 C -0.205 4.205
4 C 0.020 3.980
5 C -0.079 4.079
6 C 0.555 3.445
7 O -0.550 6.550
8 N -0.676 5.676
9 C 0.129 3.871
10 C 0.174 3.826
11 H 0.044 0.956
12 C -0.136 4.136
13 C -0.100 4.100
14 C -0.106 4.106
15 C -0.143 4.143
16 C 0.182 3.818
17 N -0.582 5.582
18 C -0.253 4.253
19 H 0.059 0.941
20 C 0.021 3.979
21 N -0.899 5.899
22 Si 0.883 3.117
23 H -0.286 1.286
24 H -0.291 1.291
25 H -0.278 1.278
26 C -0.132 4.132
27 C -0.151 4.151
28 O 0.101 5.899
29 N -0.366 5.366
30 H 0.078 0.922
31 H 0.080 0.920
32 H 0.074 0.926
33 H 0.169 0.831
34 H 0.415 0.585
35 H 0.070 0.930
36 H 0.051 0.949
37 H 0.063 0.937
38 H 0.048 0.952
39 H 0.046 0.954
40 H 0.040 0.960
41 H 0.039 0.961
42 H 0.073 0.927
43 H 0.043 0.957
44 H 0.048 0.952
45 H 0.024 0.976
46 H 0.073 0.927
47 H 0.253 0.747
48 H 0.110 0.890
49 H 0.106 0.894
50 H 0.111 0.889
51 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.524 1.411 5.225 7.733
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.139 4.139
3 C -0.226 4.226
4 C -0.044 4.044
5 C -0.084 4.084
6 C 0.338 3.662
7 O -0.429 6.429
8 N -0.325 5.325
9 C 0.004 3.996
10 C 0.065 3.935
11 H 0.062 0.938
12 C -0.177 4.177
13 C -0.138 4.138
14 C -0.144 4.144
15 C -0.182 4.182
16 C 0.057 3.943
17 N -0.304 5.304
18 C -0.383 4.383
19 H 0.077 0.923
20 C -0.179 4.179
21 N -0.542 5.542
22 Si 0.713 3.287
23 H -0.212 1.212
24 H -0.217 1.217
25 H -0.205 1.205
26 C -0.170 4.170
27 C -0.188 4.188
28 O 0.035 5.965
29 N -0.071 5.071
30 H 0.097 0.903
31 H 0.099 0.901
32 H 0.093 0.907
33 H 0.186 0.814
34 H 0.251 0.749
35 H 0.088 0.912
36 H 0.069 0.931
37 H 0.081 0.919
38 H 0.067 0.933
39 H 0.065 0.935
40 H 0.059 0.941
41 H 0.057 0.943
42 H 0.092 0.908
43 H 0.062 0.938
44 H 0.067 0.933
45 H 0.042 0.958
46 H 0.091 0.909
47 H 0.063 0.937
48 H 0.128 0.872
49 H 0.124 0.876
50 H 0.130 0.870
51 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 5.052 0.597 5.611 7.574
hybrid contribution -1.274 0.445 -0.348 1.394
sum 3.778 1.042 5.264 6.562
Atomic orbital electron populations
1.20165 0.86376 1.03876 1.02922 1.23445 0.98820 0.88851 1.02823
1.22303 0.90928 1.01175 1.08242 1.22575 0.95328 0.83363 1.03103
1.19301 0.87510 0.95284 1.06258 1.18726 0.77549 0.87323 0.82570
1.90655 1.49030 1.37577 1.65594 1.45643 1.68056 1.10962 1.07795
1.21536 1.01130 0.83814 0.93096 1.20506 0.93122 0.90657 0.89235
0.93754 1.21384 1.01181 0.98948 0.96167 1.20293 0.99049 0.98446
0.96019 1.20943 1.01757 0.95058 0.96623 1.22076 0.99698 0.96497
0.99944 1.20999 0.97495 0.89937 0.85874 1.43662 1.07335 1.45990
1.33430 1.18907 0.89372 0.93951 1.36076 0.92286 1.24951 0.97767
0.95150 0.99995 1.69954 1.34413 0.97974 1.51888 0.86655 0.86608
0.76643 0.78757 1.21211 1.21691 1.20451 1.23111 0.99519 1.03216
0.91136 1.23197 0.95327 1.00330 0.99929 1.84730 1.21700 1.22133
1.67958 1.73766 0.89163 1.23786 1.20418 0.90298 0.90147 0.90658
0.81386 0.74856 0.91196 0.93094 0.91868 0.93346 0.93550 0.94136
0.94253 0.90809 0.93835 0.93336 0.95753 0.90907 0.93689 0.87166
0.87611 0.87028 0.87177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.12 10.47 36.01 0.38 -0.74 16
2 C 0.02 0.35 7.33 -82.10 -0.60 -0.26 16
3 C -0.21 -3.89 10.59 -39.38 -0.42 -4.30 16
4 C 0.02 0.36 6.77 -35.30 -0.24 0.12 16
5 C -0.08 -1.27 2.38 -156.81 -0.37 -1.64 16
6 C 0.56 10.32 6.55 -10.99 -0.07 10.25 16
7 O -0.55 -11.55 17.11 5.56 0.10 -11.45 16
8 N -0.68 -12.58 4.71 -60.29 -0.28 -12.87 16
9 C 0.13 2.34 4.53 -4.04 -0.02 2.32 16
10 C 0.17 3.11 2.19 -67.97 -0.15 2.96 16
11 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16
12 C -0.14 -2.19 5.07 -28.55 -0.14 -2.34 16
13 C -0.10 -1.52 5.16 -29.76 -0.15 -1.67 16
14 C -0.11 -1.75 5.51 -28.01 -0.15 -1.91 16
15 C -0.14 -2.48 5.71 -27.31 -0.16 -2.63 16
16 C 0.18 3.84 4.64 -2.95 -0.01 3.83 16
17 N -0.58 -12.21 1.77 -164.47 -0.29 -12.50 16
18 C -0.25 -6.07 7.54 -15.06 -0.11 -6.18 16
19 H 0.06 1.49 6.84 -52.49 -0.36 1.13 16
20 C 0.02 0.53 4.98 -17.43 -0.09 0.44 16
21 N -0.90 -23.56 10.99 55.49 0.61 -22.95 16
22 Si 0.88 21.11 29.57 -169.99 -5.03 16.08 16
23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
26 C -0.13 -1.63 9.94 -26.73 -0.27 -1.90 16
27 C -0.15 -1.89 9.88 -26.73 -0.26 -2.15 16
28 O 0.10 1.85 10.97 17.19 0.19 2.04 16
29 N -0.37 -6.99 12.07 33.42 0.40 -6.59 16
30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
33 H 0.17 3.22 8.06 -52.49 -0.42 2.80 16
34 H 0.41 8.18 8.08 -40.82 -0.33 7.85 16
35 H 0.07 1.43 6.90 -51.93 -0.36 1.07 16
36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
38 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16
39 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16
40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16
41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.07 1.41 7.48 -51.93 -0.39 1.03 16
43 H 0.04 0.71 7.32 -51.93 -0.38 0.33 16
44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
45 H 0.02 0.56 7.99 -51.93 -0.41 0.14 16
46 H 0.07 1.77 6.51 -51.93 -0.34 1.43 16
47 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16
48 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16
49 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16
50 H 0.11 1.32 8.00 -51.93 -0.42 0.91 16
51 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16
LS Contribution 406.33 15.07 6.12 6.12
Total: -1.00 -27.73 406.33 -9.44 -37.17
By element:
Atomic # 1 Polarization: 19.17 SS G_CDS: -8.41 Total: 10.76 kcal
Atomic # 6 Polarization: -2.96 SS G_CDS: -2.85 Total: -5.81 kcal
Atomic # 7 Polarization: -55.35 SS G_CDS: 0.44 Total: -54.91 kcal
Atomic # 8 Polarization: -9.70 SS G_CDS: 0.28 Total: -9.41 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -27.73 -9.44 -37.17 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717539311.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.015 kcal
(2) G-P(sol) polarization free energy of solvation -27.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.847 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds