Wall clock time and date at job start Wed Apr 1 2020 04:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.80207 * 2 1 4 4 C 1.35447 * 103.98127 * 180.16494 * 3 2 1 5 5 C 1.50708 * 126.77346 * 179.90968 * 4 3 2 6 6 C 1.50695 * 115.54917 * 329.92973 * 5 4 3 7 7 O 1.21281 * 120.00352 * 89.33841 * 6 5 4 8 8 N 1.34782 * 119.99900 * 269.34100 * 6 5 4 9 9 C 1.46504 * 119.99875 * 184.99639 * 8 6 5 10 10 C 1.52998 * 109.46944 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.44882 * 295.04571 * 10 9 8 12 12 C 1.54866 * 109.44649 * 175.13493 * 10 9 8 13 13 C 1.47155 * 110.31773 * 168.73264 * 12 10 9 14 14 C 1.52574 * 114.34457 * 62.76738 * 13 12 10 15 15 C 1.50878 * 109.34791 * 274.99842 * 14 13 12 16 16 C 1.53940 * 110.09374 * 91.89306 * 15 14 13 17 17 N 1.44579 * 109.45283 * 54.99657 * 10 9 8 18 18 C 1.36939 * 118.63602 * 30.76051 * 17 10 9 19 19 H 1.07998 * 120.00412 * 31.02227 * 18 17 10 20 20 C 1.38813 * 119.99318 * 211.02544 * 18 17 10 21 21 N 1.31624 * 120.00407 * 10.15281 * 20 18 17 22 22 Si 1.86796 * 119.99805 * 190.15734 * 20 18 17 23 23 H 1.48499 * 109.47300 * 59.99982 * 22 20 18 24 24 H 1.48505 * 109.47112 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47022 * 299.99535 * 22 20 18 26 26 C 1.52997 * 117.51631 * 115.63333 * 5 4 3 27 27 C 1.53001 * 117.49643 * 184.26376 * 5 4 3 28 28 O 1.34035 * 106.45022 * 359.64184 * 4 3 2 29 29 N 1.20919 * 111.56802 * 0.24375 * 28 4 3 30 30 H 1.09000 * 109.47275 * 270.25866 * 1 2 3 31 31 H 1.09003 * 109.47150 * 30.25647 * 1 2 3 32 32 H 1.09000 * 109.47018 * 150.26080 * 1 2 3 33 33 H 1.07998 * 128.00778 * 0.06520 * 3 2 1 34 34 H 0.97000 * 120.00148 * 4.99061 * 8 6 5 35 35 H 1.08995 * 109.46759 * 299.99586 * 9 8 6 36 36 H 1.08999 * 109.46981 * 59.99302 * 9 8 6 37 37 H 1.09000 * 109.32587 * 288.96422 * 12 10 9 38 38 H 1.09002 * 109.33565 * 48.44349 * 12 10 9 39 39 H 1.09005 * 108.48836 * 301.52527 * 13 12 10 40 40 H 1.08994 * 108.52404 * 184.04377 * 13 12 10 41 41 H 1.09002 * 109.48724 * 155.03144 * 14 13 12 42 42 H 1.08994 * 109.48613 * 34.96470 * 14 13 12 43 43 H 1.08997 * 109.37021 * 331.69533 * 15 14 13 44 44 H 1.09005 * 109.26114 * 212.01380 * 15 14 13 45 45 H 1.09006 * 108.94547 * 198.75017 * 16 15 14 46 46 H 1.08998 * 108.95484 * 80.11724 * 16 15 14 47 47 H 0.96991 * 120.00334 * 180.02562 * 21 20 18 48 48 H 1.09006 * 117.49211 * 214.96628 * 26 5 4 49 49 H 1.08993 * 117.50296 * 359.97438 * 26 5 4 50 50 H 1.09003 * 117.50077 * 359.97229 * 27 5 4 51 51 H 1.09002 * 117.49801 * 144.97183 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6067 -0.0038 5 6 4.9022 1.3695 -0.0074 6 6 4.8653 2.7134 -0.6881 7 8 4.5750 3.7062 -0.0549 8 7 5.1548 2.8121 -2.0008 9 6 5.2262 4.1293 -2.6381 10 6 5.5688 3.9610 -4.1197 11 1 6.5692 3.5388 -4.2152 12 6 5.5237 5.3418 -4.8195 13 6 6.1053 5.2505 -6.1681 14 6 5.3527 4.3214 -7.1160 15 6 5.8333 2.9055 -6.9144 16 6 4.9541 2.1920 -5.8715 17 7 4.6103 3.0724 -4.7377 18 6 3.3307 3.0463 -4.2507 19 1 2.8980 3.9377 -3.8212 20 6 2.5898 1.8739 -4.3092 21 7 3.1732 0.7425 -4.6442 22 14 0.7646 1.9018 -3.9126 23 1 0.0673 2.8141 -4.8542 24 1 0.2076 0.5318 -4.0478 25 1 0.5677 2.3815 -2.5211 26 6 5.8125 1.2206 1.2133 27 6 6.1961 0.5598 -0.1123 28 8 3.4537 -0.7253 0.0023 29 7 2.2868 -1.0423 0.0043 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5098 33 1 2.0710 2.1743 0.0010 34 1 5.3159 2.0110 -2.5235 35 1 4.2638 4.6319 -2.5423 36 1 5.9979 4.7265 -2.1525 37 1 4.4883 5.6741 -4.8952 38 1 6.0894 6.0636 -4.2303 39 1 7.1320 4.8956 -6.0785 40 1 6.1249 6.2488 -6.6051 41 1 5.5380 4.6253 -8.1462 42 1 4.2845 4.3763 -6.9068 43 1 6.8663 2.9204 -6.5669 44 1 5.7783 2.3688 -7.8615 45 1 5.4896 1.3210 -5.4936 46 1 4.0344 1.8588 -6.3523 47 1 2.6554 -0.0766 -4.6854 48 1 6.3847 2.0949 1.5239 49 1 5.4713 0.5713 2.0194 50 1 6.1074 -0.5246 -0.1782 51 1 7.0206 0.9990 -0.6740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717539311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:35 Heat of formation + Delta-G solvation = 53.212823 kcal Electronic energy + Delta-G solvation = -33181.722281 eV Core-core repulsion = 29085.182982 eV Total energy + Delta-G solvation = -4096.539299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.01954 -41.11585 -39.71456 -37.77104 -35.99791 -35.85025 -35.20297 -33.17681 -32.57606 -32.45605 -29.74819 -28.80577 -27.44377 -25.67857 -25.17316 -24.40248 -23.68587 -23.21491 -21.97996 -21.26662 -20.76802 -20.30810 -19.02539 -18.66334 -18.07434 -17.58366 -17.23313 -16.79350 -16.51183 -16.07947 -15.96228 -15.49148 -15.20155 -15.12065 -14.84527 -14.56901 -14.36846 -14.32243 -14.20178 -14.05821 -13.67025 -13.48240 -13.38194 -13.15689 -12.90859 -12.83671 -12.72654 -12.58406 -12.45431 -12.40552 -12.16452 -12.02961 -11.88857 -11.54363 -11.38089 -11.30423 -11.19554 -11.05729 -11.01859 -10.76853 -10.36855 -10.20743 -9.82691 -8.49158 -7.80349 -5.26482 0.31463 1.11414 1.30216 1.35429 1.39689 1.41405 2.01279 2.40865 2.50417 2.69862 3.12761 3.18194 3.36926 3.59801 3.62302 3.74499 3.87018 4.05117 4.06336 4.11414 4.17469 4.29311 4.42308 4.46110 4.51050 4.53195 4.56419 4.63635 4.64957 4.68927 4.71419 4.74970 4.84635 4.91629 5.02973 5.06965 5.10769 5.11087 5.15566 5.27753 5.28984 5.40758 5.44539 5.57273 5.64549 5.68569 5.78019 5.80253 5.93348 6.47179 6.68847 7.14121 7.27289 7.28572 8.01814 8.40159 9.21323 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011034 B = 0.004904 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.084391 B = 5708.279219 C = 7060.736029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 C -0.235 4.235 4 C 0.029 3.971 5 C -0.115 4.115 6 C 0.556 3.444 7 O -0.578 6.578 8 N -0.677 5.677 9 C 0.131 3.869 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.128 4.128 13 C -0.100 4.100 14 C -0.103 4.103 15 C -0.132 4.132 16 C 0.191 3.809 17 N -0.586 5.586 18 C -0.230 4.230 19 H 0.045 0.955 20 C -0.015 4.015 21 N -0.913 5.913 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.278 1.278 26 C -0.108 4.108 27 C -0.132 4.132 28 O 0.098 5.902 29 N -0.385 5.385 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.409 0.591 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.003 0.997 46 H 0.034 0.966 47 H 0.240 0.760 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 2.286 5.424 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.144 4.144 3 C -0.257 4.257 4 C -0.035 4.035 5 C -0.120 4.120 6 C 0.341 3.659 7 O -0.459 6.459 8 N -0.325 5.325 9 C 0.007 3.993 10 C 0.065 3.935 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.171 4.171 16 C 0.066 3.934 17 N -0.308 5.308 18 C -0.361 4.361 19 H 0.063 0.937 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.204 1.204 26 C -0.145 4.145 27 C -0.169 4.169 28 O 0.035 5.965 29 N -0.092 5.092 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.176 0.824 34 H 0.245 0.755 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.021 0.979 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.409 1.500 5.809 9.534 hybrid contribution -1.974 0.258 -0.420 2.035 sum 5.435 1.759 5.389 7.853 Atomic orbital electron populations 1.20323 0.84275 1.03909 1.04983 1.23956 1.00341 0.88361 1.01711 1.22359 0.91958 1.01011 1.10377 1.22905 0.95992 0.83272 1.01320 1.19336 0.88153 0.94649 1.09843 1.19076 0.76508 0.88032 0.82298 1.90629 1.50171 1.38980 1.66111 1.45713 1.67986 1.10809 1.07942 1.21541 1.00349 0.83825 0.93601 1.20700 0.92766 0.91079 0.88928 0.92172 1.21297 1.00443 0.97864 0.97238 1.20278 0.99336 0.99286 0.94835 1.20904 0.99802 0.94906 0.98483 1.21939 0.99540 0.96699 0.98896 1.20755 0.96146 0.89965 0.86489 1.43705 1.06978 1.46326 1.33840 1.18835 0.90587 0.92772 1.33876 0.93683 1.25225 0.99157 0.95416 1.01424 1.70060 1.34231 0.97727 1.53871 0.86191 0.85315 0.75719 0.78512 1.21515 1.22822 1.20378 1.23287 0.96920 1.03568 0.90748 1.23363 0.93077 1.00539 0.99906 1.84696 1.21569 1.22168 1.68109 1.73737 0.89492 1.24230 1.21780 0.87196 0.90459 0.90160 0.82421 0.75454 0.94040 0.90777 0.94184 0.90664 0.91854 0.92088 0.92025 0.94137 0.91986 0.92391 0.97890 0.94744 0.94998 0.85953 0.86024 0.86177 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 10.47 71.24 0.75 -1.52 16 2 C 0.01 0.54 7.33 43.58 0.32 0.86 16 3 C -0.24 -9.14 10.59 22.40 0.24 -8.90 16 4 C 0.03 1.05 6.77 25.04 0.17 1.22 16 5 C -0.12 -3.60 2.38 -53.67 -0.13 -3.73 16 6 C 0.56 20.50 6.55 87.65 0.57 21.07 16 7 O -0.58 -24.27 17.11 -3.03 -0.05 -24.32 16 8 N -0.68 -24.95 4.71 -463.06 -2.18 -27.13 16 9 C 0.13 4.65 4.53 86.38 0.39 5.04 16 10 C 0.17 5.91 2.19 45.99 0.10 6.01 16 11 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 12 C -0.13 -3.81 5.07 29.41 0.15 -3.66 16 13 C -0.10 -2.66 5.16 28.63 0.15 -2.51 16 14 C -0.10 -3.17 5.51 29.76 0.16 -3.00 16 15 C -0.13 -4.30 5.71 30.22 0.17 -4.13 16 16 C 0.19 8.11 4.64 86.49 0.40 8.51 16 17 N -0.59 -24.57 1.77 -674.25 -1.19 -25.76 16 18 C -0.23 -11.25 7.54 84.03 0.63 -10.62 16 19 H 0.05 2.34 6.84 -2.91 -0.02 2.32 16 20 C -0.02 -0.80 4.98 84.86 0.42 -0.38 16 21 N -0.91 -49.45 10.99 21.65 0.24 -49.21 16 22 Si 0.91 44.53 29.57 68.60 2.03 46.56 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 25 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 26 C -0.11 -2.40 9.94 30.59 0.30 -2.09 16 27 C -0.13 -3.01 9.88 30.60 0.30 -2.71 16 28 O 0.10 3.61 10.97 71.68 0.79 4.40 16 29 N -0.39 -14.80 12.07 -49.56 -0.60 -15.40 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.16 6.34 8.06 -2.91 -0.02 6.32 16 34 H 0.41 16.06 8.08 -92.71 -0.75 15.31 16 35 H 0.04 1.71 6.90 -2.39 -0.02 1.69 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 39 H 0.06 1.52 7.36 -2.38 -0.02 1.51 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.52 7.48 -2.39 -0.02 1.50 16 43 H 0.06 1.82 7.32 -2.39 -0.02 1.80 16 44 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.00 0.14 7.99 -2.38 -0.02 0.12 16 46 H 0.03 1.71 6.51 -2.39 -0.02 1.70 16 47 H 0.24 13.41 8.31 -92.71 -0.77 12.64 16 48 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 49 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.12 2.57 8.00 -2.39 -0.02 2.55 16 51 H 0.13 2.48 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -62.42 406.33 4.32 -58.11 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.18 Total: 33.30 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.11 Total: -0.54 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -3.73 Total: -117.50 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.73 Total: -19.92 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.42 4.32 -58.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717539311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.319 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds