Wall clock time and date at job start Wed Apr 1 2020 04:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34863 * 119.09899 * 2 1 4 4 C 1.41670 * 119.33893 * 179.97438 * 3 2 1 5 5 O 1.22093 * 121.06996 * 179.97438 * 4 3 2 6 6 C 1.47097 * 117.86113 * 359.97438 * 4 3 2 7 7 C 1.47291 * 120.88267 * 180.02562 * 6 4 3 8 8 O 1.21624 * 119.99906 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00170 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99908 * 174.98702 * 9 7 6 11 11 H 1.08998 * 109.47298 * 4.81873 * 10 9 7 12 12 C 1.53009 * 109.46789 * 244.82901 * 10 9 7 13 13 N 1.46493 * 109.47081 * 54.99698 * 12 10 9 14 14 C 1.36941 * 119.99826 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47459 * 59.99468 * 18 16 14 20 20 H 1.48503 * 109.47217 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47324 * 299.99672 * 18 16 14 22 22 C 1.52997 * 109.47520 * 124.82828 * 10 9 7 23 23 C 1.54264 * 110.03138 * 57.06302 * 22 10 9 24 24 C 1.54886 * 104.19626 * 217.10650 * 23 22 10 25 25 C 1.54887 * 102.74905 * 37.94448 * 24 23 22 26 26 C 1.53875 * 110.03199 * 299.90006 * 22 10 9 27 27 C 1.37992 * 118.23697 * 359.97438 * 6 4 3 28 28 N 1.34344 * 120.37239 * 0.02562 * 27 6 4 29 29 C 1.46497 * 118.80537 * 180.02562 * 28 27 6 30 30 H 1.09005 * 109.46847 * 90.00193 * 1 2 3 31 31 H 1.08996 * 109.47297 * 209.99816 * 1 2 3 32 32 H 1.09002 * 109.47221 * 330.00416 * 1 2 3 33 33 H 1.08001 * 120.33593 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99787 * 354.97743 * 9 7 6 35 35 H 1.08998 * 109.46878 * 175.00221 * 12 10 9 36 36 H 1.09005 * 109.46605 * 294.99891 * 12 10 9 37 37 H 0.97005 * 120.00512 * 0.02562 * 13 12 10 38 38 H 0.96999 * 119.99844 * 180.02562 * 17 16 14 39 39 H 1.08998 * 110.01855 * 178.50244 * 22 10 9 40 40 H 1.09006 * 110.49010 * 335.78694 * 23 22 10 41 41 H 1.08997 * 110.48823 * 98.42829 * 23 22 10 42 42 H 1.08993 * 110.75970 * 279.62631 * 24 23 22 43 43 H 1.09011 * 110.91675 * 156.32976 * 24 23 22 44 44 H 1.09002 * 110.48886 * 203.37638 * 25 24 23 45 45 H 1.09004 * 110.59968 * 80.78963 * 25 24 23 46 46 H 1.09003 * 110.02867 * 238.57114 * 26 22 10 47 47 H 1.09002 * 110.03093 * 359.97438 * 26 22 10 48 48 H 1.08002 * 119.81404 * 179.72277 * 27 6 4 49 49 H 1.08997 * 109.47690 * 89.99201 * 29 28 27 50 50 H 1.09003 * 109.46701 * 209.99874 * 29 28 27 51 51 H 1.09007 * 109.46873 * 329.99332 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1132 0.0017 7 6 5.7436 -0.1847 0.0029 8 8 6.4021 0.8379 0.0025 9 7 6.3601 -1.3832 0.0044 10 6 7.8192 -1.4566 -0.1053 11 1 8.2356 -0.4494 -0.0921 12 6 8.1978 -2.1477 -1.4168 13 7 7.5620 -1.4507 -2.5374 14 6 7.7578 -1.8929 -3.8186 15 1 8.3812 -2.7553 -4.0028 16 6 7.1557 -1.2320 -4.8806 17 7 6.3963 -0.1807 -4.6561 18 14 7.4233 -1.8349 -6.6282 19 1 6.9335 -3.2315 -6.7506 20 1 6.6778 -0.9638 -7.5719 21 1 8.8720 -1.7883 -6.9516 22 6 8.3797 -2.2558 1.0728 23 6 7.7428 -3.6603 1.1093 24 6 7.5691 -3.9596 2.6190 25 6 7.1584 -2.5819 3.1955 26 6 8.0082 -1.5702 2.3993 27 6 3.5076 -1.2618 0.0027 28 7 2.1664 -1.1847 0.0021 29 6 1.3880 -2.4257 0.0038 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6137 2.1084 0.0004 34 1 5.8377 -2.1972 0.0783 35 1 9.2805 -2.1234 -1.5408 36 1 7.8580 -3.1832 -1.3930 37 1 7.0024 -0.6758 -2.3720 38 1 5.9754 0.2809 -5.3981 39 1 9.4630 -2.3385 0.9858 40 1 6.7749 -3.6535 0.6079 41 1 8.4065 -4.3923 0.6492 42 1 8.5087 -4.2969 3.0565 43 1 6.7825 -4.6965 2.7817 44 1 7.3958 -2.5269 4.2580 45 1 6.0962 -2.3994 3.0329 46 1 8.9113 -1.3208 2.9564 47 1 7.4289 -0.6678 2.2037 48 1 3.9899 -2.2281 -0.0010 49 1 1.1946 -2.7321 1.0318 50 1 0.4411 -2.2614 -0.5106 51 1 1.9491 -3.2072 -0.5088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724084908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:13 Heat of formation + Delta-G solvation = -26.659194 kcal Electronic energy + Delta-G solvation = -32230.963383 eV Core-core repulsion = 28130.960574 eV Total energy + Delta-G solvation = -4100.002809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14817 -39.64359 -38.03297 -37.20877 -35.00036 -33.67986 -33.18926 -32.54896 -30.96266 -29.68378 -28.64694 -28.07344 -26.95392 -26.10292 -24.20069 -23.26723 -21.92842 -21.38435 -20.71182 -20.05758 -19.12172 -18.04020 -17.44857 -17.01752 -16.18839 -16.06222 -15.82244 -15.66411 -15.42938 -14.56891 -14.47259 -14.27934 -14.11243 -13.72481 -13.59765 -13.41041 -13.34005 -13.23829 -13.17485 -12.99626 -12.88860 -12.61283 -12.48806 -12.04042 -11.92705 -11.89641 -11.62911 -11.08234 -11.02681 -10.97352 -10.76293 -10.62182 -10.54434 -10.38334 -10.24389 -9.99945 -9.60746 -9.49004 -9.41947 -8.85472 -8.75291 -8.39829 -7.79104 -6.80043 -5.62930 -2.93292 1.01748 1.39936 2.34278 3.43008 3.47387 3.52417 3.54176 3.63985 4.01430 4.21485 4.34149 4.51268 4.61728 4.68242 4.68906 4.72779 4.73609 4.83359 4.97723 5.03668 5.08821 5.17031 5.30501 5.41312 5.46873 5.53858 5.54640 5.64875 5.67218 5.71522 5.74898 5.79244 5.84983 5.90605 5.98344 6.02627 6.15046 6.24668 6.31925 6.36680 6.41934 6.47106 6.57556 6.60406 6.62826 6.81174 6.84491 7.16662 7.76970 8.08007 8.44904 8.53593 8.94245 9.64527 10.25619 10.60541 11.58281 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006522 B = 0.004974 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4292.433419 B = 5627.979835 C = 8187.710112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 C -0.269 4.269 4 C 0.408 3.592 5 O -0.477 6.477 6 C -0.280 4.280 7 C 0.578 3.422 8 O -0.509 6.509 9 N -0.714 5.714 10 C 0.139 3.861 11 H 0.101 0.899 12 C 0.143 3.857 13 N -0.728 5.728 14 C -0.242 4.242 15 H 0.068 0.932 16 C -0.012 4.012 17 N -0.925 5.925 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.097 4.097 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.119 4.119 27 C 0.168 3.832 28 N -0.473 5.473 29 C 0.051 3.949 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.386 0.614 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.163 0.837 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.266 -10.693 17.457 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.047 3.953 3 C -0.293 4.293 4 C 0.293 3.707 5 O -0.357 6.357 6 C -0.291 4.291 7 C 0.365 3.635 8 O -0.383 6.383 9 N -0.367 5.367 10 C 0.034 3.966 11 H 0.119 0.881 12 C 0.014 3.986 13 N -0.373 5.373 14 C -0.374 4.374 15 H 0.085 0.915 16 C -0.209 4.209 17 N -0.573 5.573 18 Si 0.735 3.265 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.117 4.117 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.158 4.158 26 C -0.157 4.157 27 C 0.039 3.961 28 N -0.161 5.161 29 C -0.091 4.091 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.167 0.833 34 H 0.221 0.779 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.180 0.820 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.511 -9.584 17.285 23.391 hybrid contribution -0.332 -0.721 -1.199 1.438 sum -12.843 -10.305 16.086 23.019 Atomic orbital electron populations 1.21145 0.88344 1.04556 1.04208 1.20202 0.94631 0.85094 0.95413 1.22258 0.96479 0.97064 1.13505 1.18136 0.88153 0.88023 0.76371 1.90821 1.69922 1.33216 1.41749 1.22575 0.94675 0.94929 1.16925 1.17359 0.85959 0.83740 0.76476 1.90844 1.65608 1.33885 1.47988 1.45696 1.07625 1.07349 1.76033 1.21298 0.79846 1.01458 0.93958 0.88106 1.21031 0.96013 0.94749 0.86776 1.42338 1.58582 1.35222 1.01193 1.19144 1.24723 1.09803 0.83685 0.91452 1.24764 1.00427 0.98018 0.97690 1.69705 1.35862 1.21302 1.30418 0.86329 0.77529 0.77486 0.85150 1.21505 1.21784 1.21316 1.22082 1.00407 0.94678 0.94543 1.22398 1.00797 0.96440 0.95759 1.22500 1.00854 0.96815 0.95999 1.22314 0.99698 0.94948 0.98856 1.22160 0.99590 0.98864 0.95085 1.22111 0.82054 0.99863 0.92114 1.42444 1.05253 1.06938 1.61439 1.22477 0.97871 0.84778 1.03967 0.89328 0.90462 0.89026 0.83275 0.77931 0.95734 0.96204 0.77730 0.93539 0.90033 0.91815 0.91432 0.91752 0.92097 0.92325 0.92107 0.92251 0.91146 0.81992 0.90285 0.88901 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 8.97 36.01 0.32 -0.33 16 2 C 0.15 1.52 6.64 -82.13 -0.55 0.98 16 3 C -0.27 -3.80 9.57 -39.47 -0.38 -4.18 16 4 C 0.41 8.05 6.96 -34.68 -0.24 7.81 16 5 O -0.48 -11.85 16.41 -15.18 -0.25 -12.10 16 6 C -0.28 -4.99 6.05 -102.71 -0.62 -5.61 16 7 C 0.58 11.83 6.87 -12.58 -0.09 11.75 16 8 O -0.51 -13.05 14.91 -14.76 -0.22 -13.27 16 9 N -0.71 -11.89 3.70 -54.92 -0.20 -12.09 16 10 C 0.14 2.44 2.04 -67.93 -0.14 2.30 16 11 H 0.10 2.11 6.91 -51.93 -0.36 1.75 16 12 C 0.14 2.93 5.84 -4.04 -0.02 2.91 16 13 N -0.73 -19.43 5.43 -59.91 -0.33 -19.75 16 14 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.92 -29.75 13.06 55.49 0.72 -29.02 16 18 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 C -0.10 -1.28 2.82 -89.50 -0.25 -1.53 16 23 C -0.12 -1.28 5.12 -25.08 -0.13 -1.40 16 24 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 25 C -0.12 -1.23 6.83 -25.08 -0.17 -1.40 16 26 C -0.12 -1.50 6.19 -25.62 -0.16 -1.66 16 27 C 0.17 2.02 9.79 -16.54 -0.16 1.86 16 28 N -0.47 -4.34 2.97 -119.75 -0.36 -4.70 16 29 C 0.05 0.21 9.64 59.85 0.58 0.79 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.22 6.47 -51.93 -0.34 -0.12 16 32 H 0.09 0.40 8.05 -51.93 -0.42 -0.01 16 33 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.39 5.18 5.05 -40.82 -0.21 4.97 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.39 7.13 -51.93 -0.37 0.02 16 37 H 0.39 11.42 6.80 -40.82 -0.28 11.14 16 38 H 0.25 7.96 8.31 -40.82 -0.34 7.62 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.69 5.96 -51.93 -0.31 0.39 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.08 7.12 -51.93 -0.37 0.71 16 48 H 0.16 1.43 6.36 -52.49 -0.33 1.09 16 49 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 50 H 0.09 0.24 6.36 -51.93 -0.33 -0.09 16 51 H 0.09 0.31 7.96 -51.93 -0.41 -0.10 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -42.40 402.89 -9.93 -52.32 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.92 Total: 11.14 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -2.42 Total: 3.33 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.16 Total: -65.56 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.47 Total: -25.37 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -42.40 -9.93 -52.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724084908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.662 kcal (2) G-P(sol) polarization free energy of solvation -42.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds