Wall clock time and date at job start Wed Apr 1 2020 04:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34863 * 119.09899 * 2 1 4 4 C 1.41670 * 119.33893 * 179.97438 * 3 2 1 5 5 O 1.22093 * 121.06996 * 179.97438 * 4 3 2 6 6 C 1.47097 * 117.86113 * 359.97438 * 4 3 2 7 7 C 1.47291 * 120.88267 * 180.02562 * 6 4 3 8 8 O 1.21624 * 119.99906 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00170 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99908 * 174.98702 * 9 7 6 11 11 H 1.08998 * 109.47298 * 4.81873 * 10 9 7 12 12 C 1.53009 * 109.46789 * 244.82901 * 10 9 7 13 13 N 1.46493 * 109.47081 * 54.99698 * 12 10 9 14 14 C 1.36941 * 119.99826 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47459 * 59.99468 * 18 16 14 20 20 H 1.48503 * 109.47217 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47324 * 299.99672 * 18 16 14 22 22 C 1.52997 * 109.47520 * 124.82828 * 10 9 7 23 23 C 1.54264 * 110.03138 * 57.06302 * 22 10 9 24 24 C 1.54886 * 104.19626 * 217.10650 * 23 22 10 25 25 C 1.54887 * 102.74905 * 37.94448 * 24 23 22 26 26 C 1.53875 * 110.03199 * 299.90006 * 22 10 9 27 27 C 1.37992 * 118.23697 * 359.97438 * 6 4 3 28 28 N 1.34344 * 120.37239 * 0.02562 * 27 6 4 29 29 C 1.46497 * 118.80537 * 180.02562 * 28 27 6 30 30 H 1.09005 * 109.46847 * 90.00193 * 1 2 3 31 31 H 1.08996 * 109.47297 * 209.99816 * 1 2 3 32 32 H 1.09002 * 109.47221 * 330.00416 * 1 2 3 33 33 H 1.08001 * 120.33593 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99787 * 354.97743 * 9 7 6 35 35 H 1.08998 * 109.46878 * 175.00221 * 12 10 9 36 36 H 1.09005 * 109.46605 * 294.99891 * 12 10 9 37 37 H 0.97005 * 120.00512 * 0.02562 * 13 12 10 38 38 H 0.96999 * 119.99844 * 180.02562 * 17 16 14 39 39 H 1.08998 * 110.01855 * 178.50244 * 22 10 9 40 40 H 1.09006 * 110.49010 * 335.78694 * 23 22 10 41 41 H 1.08997 * 110.48823 * 98.42829 * 23 22 10 42 42 H 1.08993 * 110.75970 * 279.62631 * 24 23 22 43 43 H 1.09011 * 110.91675 * 156.32976 * 24 23 22 44 44 H 1.09002 * 110.48886 * 203.37638 * 25 24 23 45 45 H 1.09004 * 110.59968 * 80.78963 * 25 24 23 46 46 H 1.09003 * 110.02867 * 238.57114 * 26 22 10 47 47 H 1.09002 * 110.03093 * 359.97438 * 26 22 10 48 48 H 1.08002 * 119.81404 * 179.72277 * 27 6 4 49 49 H 1.08997 * 109.47690 * 89.99201 * 29 28 27 50 50 H 1.09003 * 109.46701 * 209.99874 * 29 28 27 51 51 H 1.09007 * 109.46873 * 329.99332 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1132 0.0017 7 6 5.7436 -0.1847 0.0029 8 8 6.4021 0.8379 0.0025 9 7 6.3601 -1.3832 0.0044 10 6 7.8192 -1.4566 -0.1053 11 1 8.2356 -0.4494 -0.0921 12 6 8.1978 -2.1477 -1.4168 13 7 7.5620 -1.4507 -2.5374 14 6 7.7578 -1.8929 -3.8186 15 1 8.3812 -2.7553 -4.0028 16 6 7.1557 -1.2320 -4.8806 17 7 6.3963 -0.1807 -4.6561 18 14 7.4233 -1.8349 -6.6282 19 1 6.9335 -3.2315 -6.7506 20 1 6.6778 -0.9638 -7.5719 21 1 8.8720 -1.7883 -6.9516 22 6 8.3797 -2.2558 1.0728 23 6 7.7428 -3.6603 1.1093 24 6 7.5691 -3.9596 2.6190 25 6 7.1584 -2.5819 3.1955 26 6 8.0082 -1.5702 2.3993 27 6 3.5076 -1.2618 0.0027 28 7 2.1664 -1.1847 0.0021 29 6 1.3880 -2.4257 0.0038 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6137 2.1084 0.0004 34 1 5.8377 -2.1972 0.0783 35 1 9.2805 -2.1234 -1.5408 36 1 7.8580 -3.1832 -1.3930 37 1 7.0024 -0.6758 -2.3720 38 1 5.9754 0.2809 -5.3981 39 1 9.4630 -2.3385 0.9858 40 1 6.7749 -3.6535 0.6079 41 1 8.4065 -4.3923 0.6492 42 1 8.5087 -4.2969 3.0565 43 1 6.7825 -4.6965 2.7817 44 1 7.3958 -2.5269 4.2580 45 1 6.0962 -2.3994 3.0329 46 1 8.9113 -1.3208 2.9564 47 1 7.4289 -0.6678 2.2037 48 1 3.9899 -2.2281 -0.0010 49 1 1.1946 -2.7321 1.0318 50 1 0.4411 -2.2614 -0.5106 51 1 1.9491 -3.2072 -0.5088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724084908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:11 Heat of formation + Delta-G solvation = -57.469467 kcal Electronic energy + Delta-G solvation = -32232.299417 eV Core-core repulsion = 28130.960574 eV Total energy + Delta-G solvation = -4101.338843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21427 -40.95880 -39.29746 -38.56918 -36.72121 -35.18775 -34.39542 -33.72926 -32.76580 -31.10580 -29.58062 -28.92233 -27.73626 -27.63611 -25.40093 -24.99883 -23.38051 -22.63702 -21.87858 -21.10145 -20.37108 -19.25665 -19.11697 -18.44877 -17.27049 -16.99812 -16.97508 -16.92085 -16.63815 -16.40697 -15.87777 -15.57799 -15.35295 -15.09422 -15.00913 -14.73237 -14.66283 -14.21928 -14.12687 -13.97185 -13.84623 -13.82251 -13.61851 -13.32866 -13.09509 -12.98409 -12.71365 -12.63111 -12.53285 -12.23271 -11.98234 -11.88977 -11.82115 -11.65001 -11.53647 -11.42657 -11.36243 -11.08051 -10.90078 -10.45540 -10.27935 -9.90765 -9.01178 -8.99462 -7.90927 -5.23072 -0.15610 0.34628 1.43246 1.49023 1.50193 1.55158 1.98303 2.26515 2.55774 2.85944 3.23455 3.40454 3.58044 3.61026 3.68514 3.75423 3.82294 3.86611 4.14110 4.24913 4.29069 4.33682 4.39221 4.46491 4.52396 4.59374 4.63159 4.68572 4.71637 4.73823 4.80878 4.83055 4.88060 4.88390 4.90940 4.93562 5.09433 5.11796 5.16309 5.20361 5.32683 5.34127 5.42625 5.46807 5.51454 5.56928 5.69393 5.74532 5.80745 6.26067 6.71043 7.13711 7.32079 7.48784 8.10711 8.33670 9.31485 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006522 B = 0.004974 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4292.433419 B = 5627.979835 C = 8187.710112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.187 3.813 3 C -0.309 4.309 4 C 0.378 3.622 5 O -0.571 6.571 6 C -0.347 4.347 7 C 0.572 3.428 8 O -0.583 6.583 9 N -0.693 5.693 10 C 0.148 3.852 11 H 0.053 0.947 12 C 0.143 3.857 13 N -0.745 5.745 14 C -0.243 4.243 15 H 0.083 0.917 16 C -0.081 4.081 17 N -0.973 5.973 18 Si 0.979 3.021 19 H -0.267 1.267 20 H -0.301 1.301 21 H -0.281 1.281 22 C -0.090 4.090 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.120 4.120 27 C 0.215 3.785 28 N -0.456 5.456 29 C 0.032 3.968 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.404 0.596 35 H 0.023 0.977 36 H 0.050 0.950 37 H 0.369 0.631 38 H 0.247 0.753 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.204 0.796 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 -16.940 18.252 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 C -0.333 4.333 4 C 0.272 3.728 5 O -0.460 6.460 6 C -0.357 4.357 7 C 0.361 3.639 8 O -0.462 6.462 9 N -0.346 5.346 10 C 0.042 3.958 11 H 0.071 0.929 12 C 0.016 3.984 13 N -0.388 5.388 14 C -0.374 4.374 15 H 0.101 0.899 16 C -0.273 4.273 17 N -0.624 5.624 18 Si 0.807 3.193 19 H -0.192 1.192 20 H -0.228 1.228 21 H -0.207 1.207 22 C -0.110 4.110 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.157 4.157 27 C 0.081 3.919 28 N -0.139 5.139 29 C -0.107 4.107 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.172 0.828 34 H 0.242 0.758 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.201 0.799 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.221 0.779 49 H 0.133 0.867 50 H 0.138 0.862 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.525 -15.995 18.119 28.726 hybrid contribution 0.468 1.029 -1.378 1.782 sum -15.057 -14.967 16.741 27.036 Atomic orbital electron populations 1.21389 0.83526 1.07144 1.05947 1.20892 0.97200 0.83852 0.90119 1.22126 0.93906 0.99666 1.17552 1.19041 0.90599 0.87929 0.75274 1.90751 1.71883 1.35680 1.47657 1.22292 0.93719 0.96433 1.23289 1.17903 0.87285 0.83561 0.75145 1.90787 1.67355 1.36437 1.51657 1.45422 1.07338 1.07061 1.74817 1.21110 0.80433 0.99454 0.94787 0.92913 1.21250 0.95437 0.95624 0.86137 1.42623 1.58720 1.35103 1.02347 1.19662 1.23557 1.09547 0.84678 0.89944 1.25700 1.00813 0.98428 1.02347 1.69950 1.37877 1.23357 1.31193 0.85141 0.77361 0.77529 0.79254 1.19218 1.22794 1.20686 1.22042 1.00704 0.95771 0.92464 1.22421 1.00798 0.94310 0.97675 1.22452 1.02190 0.96302 0.93954 1.22303 0.99152 0.94740 0.99166 1.22128 0.99904 0.98242 0.95472 1.22494 0.83219 0.99269 0.86911 1.43154 1.04746 1.09065 1.56979 1.23120 0.98387 0.82070 1.07080 0.87580 0.86440 0.88005 0.82821 0.75772 0.95869 0.93242 0.79918 0.94477 0.89486 0.91461 0.90430 0.90838 0.89638 0.91064 0.91959 0.91746 0.94974 0.77908 0.86736 0.86165 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 8.97 71.24 0.64 -0.01 16 2 C 0.19 3.27 6.64 41.21 0.27 3.55 16 3 C -0.31 -9.29 9.57 22.34 0.21 -9.07 16 4 C 0.38 16.78 6.96 25.44 0.18 16.96 16 5 O -0.57 -32.93 16.41 13.52 0.22 -32.71 16 6 C -0.35 -13.30 6.05 -18.63 -0.11 -13.41 16 7 C 0.57 25.88 6.87 86.62 0.60 26.47 16 8 O -0.58 -34.22 14.91 15.03 0.22 -34.00 16 9 N -0.69 -24.16 3.70 -445.92 -1.65 -25.81 16 10 C 0.15 5.45 2.04 44.99 0.09 5.54 16 11 H 0.05 2.48 6.91 -2.39 -0.02 2.46 16 12 C 0.14 5.90 5.84 86.38 0.50 6.41 16 13 N -0.75 -41.03 5.43 -343.44 -1.87 -42.89 16 14 C -0.24 -14.15 9.99 84.03 0.84 -13.31 16 15 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 16 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 17 N -0.97 -65.32 13.06 21.65 0.28 -65.04 16 18 Si 0.98 47.98 29.55 68.60 2.03 50.01 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 22 C -0.09 -2.35 2.82 -10.07 -0.03 -2.37 16 23 C -0.11 -2.14 5.12 31.67 0.16 -1.98 16 24 C -0.11 -1.60 6.91 31.88 0.22 -1.38 16 25 C -0.12 -2.11 6.83 31.67 0.22 -1.89 16 26 C -0.12 -3.07 6.19 31.32 0.19 -2.88 16 27 C 0.22 4.79 9.79 84.25 0.83 5.61 16 28 N -0.46 -6.55 2.97 -532.77 -1.58 -8.14 16 29 C 0.03 0.04 9.64 127.77 1.23 1.27 16 30 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.12 -0.22 6.47 -2.39 -0.02 -0.24 16 32 H 0.10 0.48 8.05 -2.39 -0.02 0.46 16 33 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.40 10.42 5.05 -92.71 -0.47 9.95 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.79 7.13 -2.38 -0.02 1.78 16 37 H 0.37 23.13 6.80 -92.70 -0.63 22.50 16 38 H 0.25 16.16 8.31 -92.71 -0.77 15.39 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 1.21 5.96 -2.38 -0.01 1.19 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.03 1.08 7.12 -2.39 -0.02 1.06 16 48 H 0.20 2.73 6.36 -2.91 -0.02 2.71 16 49 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H 0.12 -0.34 6.36 -2.39 -0.02 -0.36 16 51 H 0.11 -0.07 7.96 -2.38 -0.02 -0.09 16 Total: -1.00 -110.50 402.89 4.03 -106.48 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.14 Total: 37.06 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.51 Total: 15.04 kcal Atomic # 7 Polarization: -137.07 SS G_CDS: -4.81 Total: -141.88 kcal Atomic # 8 Polarization: -67.15 SS G_CDS: 0.45 Total: -66.71 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -110.50 4.03 -106.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724084908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.007 kcal (2) G-P(sol) polarization free energy of solvation -110.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds